Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004139

Physical Location & Seq

Genomic Coordinates Forward (+)

11116155 .. 11117928

Gene Structure 1774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG149800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGAAACCAGAGCCAAGACTAGTATATTTACAAAGAATATGATGCATTTAGAGCGTAATGAGAAGATCACTTGCTATGTTACTGTTAGGGGAGAGAAGGCAATGTCACTGTTGGAGAGTGGGCTAAAGGTGAAGGAGTATGAGCTTTTGCTTAAGAACTTCAGTGATACTGGCTGCATTGGATTCGGTATTCAGGAGCATATCGATCTTGGAATTAAGGAGCAGCAAAGGGATCCAAAAAGGTGGTCCAGCAACCTTCAAGATGTCAGAAATCTCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

93

Amino Acids

10.82

Weight (kDa)

8.62

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5_C	PF00673	22 - 76	5.3e-09	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42740 AT3G58700 AT4G18730 AT5G45775 AT5G45775
fragaria_vesca	FvH4_3g07450
malus_domestica	MD05G1297100.v1.1 MD09G1235900.v1.1 MD10G1276900.v1.1 MD17G1264500.v1.1
prunus_persica	Prupe.3G113800_v2.0.a1 Prupe.4G065200_v2.0.a1 Prupe.4G065200_v2.0.a1
pyrus_communis	pycom05g27530 pycom09g15380 pycom17g26430
rosa_chinensis	RchiOBHm_Chr2g0130711 RchiOBHm_Chr5g0011401
rosa_laevigata	RLG00000019145 RLG00000028308 RLG00000031830
rosa_multiflora	Rmu_sc0000334.1_g000013 Rmu_sc0009975.1_g000014
rosa_roxburghii	Rroxscaffold_2G00113620
rosa_rugosa	Rorug02G0292800 Rorug02G0292800 Rorug04G0456900
rosa_samantha	Rh2DG370900 Rh5AG088600 Rh5DG083600 Rh7BG149800
rosa_wichuraiana	Rw2G027520 Rw5G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	227, 240
AcuI	CTGAAG	1 cut(s)	145
AflII	CTTAAG	1 cut(s)	152
AgsI	TTSAA	1 cut(s)	260
AhlI	ACTAGT	1 cut(s)	20
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
AlwI	GGATC	2 cut(s)	227, 240
ApeKI	GCWGC	2 cut(s)	174, 223
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
AspS9I	GGNCC	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	246
BamHI	GGATCC	1 cut(s)	232
BbvI	GCAGC	2 cut(s)	161, 235
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BcuI	ACTAGT	1 cut(s)	20
BfaI	CTAG	1 cut(s)	21
BfrI	CTTAAG	1 cut(s)	152
BisI	GCNGC	2 cut(s)	175, 224
BlsI	GCNGC	2 cut(s)	176, 225
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	1 cut(s)	234
BmsI	GCATC	1 cut(s)	33
Bsa29I	ATCGAT	1 cut(s)	204
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	108
BseCI	ATCGAT	1 cut(s)	204
BseMI	GCAATG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	175
BseXI	GCAGC	2 cut(s)	161, 235
BshVI	ATCGAT	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	66, 205, 232
BspDI	ATCGAT	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	234
BspPI	GGATC	2 cut(s)	227, 240
BspTI	CTTAAG	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	175
BssMI	GATC	3 cut(s)	66, 205, 232
Bst4CI	ACNGT	2 cut(s)	85, 111
BstAFI	CTTAAG	1 cut(s)	152
BstKTI	GATC	3 cut(s)	69, 208, 235
BstMBI	GATC	3 cut(s)	66, 205, 232
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstV1I	GCAGC	2 cut(s)	161, 235
BstX2I	RGATCY	1 cut(s)	232
BstXI	CCANNNNNNTGG	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	232
Bsu15I	ATCGAT	1 cut(s)	204
BsuTUI	ATCGAT	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	107, 169
Cfr13I	GGNCC	1 cut(s)	246
ClaI	ATCGAT	1 cut(s)	204
CviJI	RGCY	4 cut(s)	14, 124, 145, 174
CviKI_1	RGCY	4 cut(s)	14, 124, 145, 174
DpnI	GATC	3 cut(s)	68, 207, 234
DpnII	GATC	3 cut(s)	66, 205, 232
Eco47I	GGWCC	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	145
EcoT22I	ATGCAT	1 cut(s)	48
FaiI	YATR	5 cut(s)	26, 41, 78, 141, 201
Fnu4HI	GCNGC	2 cut(s)	175, 224
Fsp4HI	GCNGC	2 cut(s)	175, 224
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	2 cut(s)	175, 224
HinfI	GANTC	1 cut(s)	183
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	2 cut(s)	194, 260
HpyAV	CCTTC	3 cut(s)	91, 127, 266
HpyCH4III	ACNGT	2 cut(s)	85, 111
HpyCH4V	TGCA	2 cut(s)	46, 177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
Kzo9I	GATC	3 cut(s)	66, 205, 232
LmnI	GCTCC	2 cut(s)	196, 220
LpnPI	CCDG	4 cut(s)	22, 156, 179, 262
Lsp1109I	GCAGC	2 cut(s)	161, 235
LweI	GCATC	1 cut(s)	33
MaeI	CTAG	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	79, 105
MalI	GATC	3 cut(s)	68, 207, 234
MboI	GATC	3 cut(s)	66, 205, 232
MboII	GAAGA	1 cut(s)	76
MflI	RGATCY	1 cut(s)	232
MluCI	AATT	1 cut(s)	213
MmeI	TCCRAC	1 cut(s)	93
Mph1103I	ATGCAT	1 cut(s)	48
MseI	TTAA	2 cut(s)	153, 216
MspCI	CTTAAG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	3 cut(s)	66, 205, 232
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	105
NsiI	ATGCAT	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	183
PkrI	GCNGC	2 cut(s)	176, 225
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	232
SaqAI	TTAA	2 cut(s)	153, 216
SatI	GCNGC	2 cut(s)	175, 224
Sau3AI	GATC	3 cut(s)	66, 205, 232
Sau96I	GGNCC	1 cut(s)	246
SetI	ASST	4 cut(s)	132, 147, 245, 258
SfaNI	GCATC	1 cut(s)	33
SgeI	CNNG	9 cut(s)	21, 28, 33, 84, 183, 206, 221, 261, 272
SinI	GGWCC	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SpeI	ACTAGT	1 cut(s)	20
Sse9I	AATT	1 cut(s)	213
SspMI	CTAG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	85, 111
TaqI	TCGA	1 cut(s)	204
TasI	AATT	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	2 cut(s)	153, 216
Tru9I	TTAA	2 cut(s)	153, 216
TscAI	CASTG	2 cut(s)	114, 169
TseFI	GTSAC	1 cut(s)	105
TseI	GCWGC	2 cut(s)	174, 223
Tsp45I	GTSAC	1 cut(s)	105
TspRI	CASTG	2 cut(s)	114, 169
Vha464I	CTTAAG	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	246
XspI	CTAG	1 cut(s)	21
Zsp2I	ATGCAT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.