Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004139

Physical Location & Seq

Genomic Coordinates Reverse (-)

24724350 .. 24726162

Gene Structure 1813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g26430.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAGGGAGATCAAGGTCCAGAAGCTGGTCCTCAACATCTCCGTCGGTGAGAGCGGAGATAGACTCACGAGAGCCTCCAAGGTGTTGGAGCAACTCAGTGGCCAAACACCCGTTTTCTCCAAAGCAAGGTACACTGTCCGATCCTTTGGTATCAGGCGTAATGAGAAGATTGCCTGTTACGTCACCGTGAGGGGCGACAAGGCAATGCAACTTTTGGAGAGTGGATTGAAGGTCAAGGAATATGAGTTGCTACGAAGGAACTTCAGTGACACTGGTTGTTTTGGATTTGGCATCCAGGAGCACATTGATTTGGGAATCAAGTACGATCCTTCTACTGGTATCTATGGAATGGATTTCTACGTTGTTTTGGAGCGTCCAGGTTATCGTGTGGGTCGTCGTCGCAGGTGCAAGTCTCGCGTGGGGATCCGGCACAGGGTCACAAAGGATGATGCCATGAAATGGTTCCAGGTCAAGTATGAGGGTGTGATTCTTAACAAGTCACAGCAGCTCACAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

173

Amino Acids

19.8

Weight (kDa)

10.01

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42740 AT3G58700 AT4G18730 AT5G45775 AT5G45775
fragaria_vesca	FvH4_3g07450
malus_domestica	MD05G1297100.v1.1 MD09G1235900.v1.1 MD10G1276900.v1.1 MD17G1264500.v1.1
prunus_persica	Prupe.3G113800_v2.0.a1 Prupe.4G065200_v2.0.a1 Prupe.4G065200_v2.0.a1
pyrus_communis	pycom05g27530 pycom09g15380 pycom17g26430
rosa_chinensis	RchiOBHm_Chr2g0130711 RchiOBHm_Chr5g0011401
rosa_laevigata	RLG00000019145 RLG00000028308 RLG00000031830
rosa_multiflora	Rmu_sc0000334.1_g000013 Rmu_sc0009975.1_g000014
rosa_roxburghii	Rroxscaffold_2G00113620
rosa_rugosa	Rorug02G0292800 Rorug02G0292800 Rorug04G0456900
rosa_samantha	Rh2DG370900 Rh5AG088600 Rh5DG083600 Rh7BG149800
rosa_wichuraiana	Rw2G027520 Rw5G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	393
Acc36I	ACCTGC	1 cut(s)	393
AccB7I	CCANNNNNTGG	2 cut(s)	25, 459
AccBSI	CCGCTC	1 cut(s)	54
AccII	CGCG	1 cut(s)	417
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	4 cut(s)	135, 320, 418, 431
AcoI	YGGCCR	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	247
AfaI	GTAC	2 cut(s)	131, 323
AfiI	CCNNNNNNNGG	5 cut(s)	25, 126, 335, 433, 459
AgsI	TTSAA	1 cut(s)	229
AjnI	CCWGG	3 cut(s)	294, 376, 465
AluBI	AGCT	3 cut(s)	25, 508, 515
AluI	AGCT	3 cut(s)	25, 508, 515
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	1 cut(s)	417
AlwI	GGATC	4 cut(s)	135, 320, 418, 431
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	505
Asp700I	GAANNNNTTC	1 cut(s)	461
AspS9I	GGNCC	2 cut(s)	16, 28
AsuHPI	GGTGA	2 cut(s)	59, 175
AvaII	GGWCC	2 cut(s)	16, 28
BalI	TGGCCA	1 cut(s)	102
BamHI	GGATCC	1 cut(s)	423
BauI	CACGAG	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	303
BciT130I	CCWGG	3 cut(s)	296, 378, 467
BcoDI	GTCTC	1 cut(s)	417
BfuAI	ACCTGC	1 cut(s)	393
BisI	GCNGC	1 cut(s)	506
BlsI	GCNGC	1 cut(s)	507
Bme1390I	CCNGG	3 cut(s)	296, 378, 467
Bme18I	GGWCC	2 cut(s)	16, 28
BmgT120I	GGNCC	2 cut(s)	16, 28
BmiI	GGNNCC	2 cut(s)	425, 464
BmrFI	CCNGG	3 cut(s)	296, 378, 467
BmsI	GCATC	2 cut(s)	300, 439
BplI	GAGNNNNNCTC	2 cut(s)	48, 80
BsaJI	CCNNGG	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	5 cut(s)	25, 126, 335, 433, 459
Bse1I	ACTGG	2 cut(s)	277, 340
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	3 cut(s)	296, 378, 467
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	2 cut(s)	291, 451
BseLI	CCNNNNNNNGG	5 cut(s)	25, 126, 335, 433, 459
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	109
BseNI	ACTGG	2 cut(s)	277, 340
Bsh1236I	CGCG	1 cut(s)	417
BshFI	GGCC	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	427
BslI	CCNNNNNNNGG	5 cut(s)	25, 126, 335, 433, 459
BsmAI	GTCTC	1 cut(s)	417
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	4 cut(s)	9, 140, 325, 423
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	108
BspFNI	CGCG	1 cut(s)	417
BspLI	GGNNCC	2 cut(s)	425, 464
BspMI	ACCTGC	1 cut(s)	393
BspPI	GGATC	4 cut(s)	135, 320, 418, 431
BsrBI	CCGCTC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	277, 340
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	4 cut(s)	9, 140, 325, 423
BssSI	CACGAG	1 cut(s)	67
BssT1I	CCWWGG	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	67
Bst2UI	CCWGG	3 cut(s)	296, 378, 467
Bst4CI	ACNGT	2 cut(s)	136, 187
BstDEI	CTNAG	2 cut(s)	95, 516
BstF5I	GGATG	2 cut(s)	291, 451
BstFNI	CGCG	1 cut(s)	417
BstKTI	GATC	4 cut(s)	12, 143, 328, 426
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	4 cut(s)	9, 140, 325, 423
BstMWI	GCNNNNNNNGC	1 cut(s)	414
BstNI	CCWGG	3 cut(s)	296, 378, 467
BstSCI	CCNGG	3 cut(s)	294, 376, 465
BstUI	CGCG	1 cut(s)	417
BstX2I	RGATCY	1 cut(s)	423
BstXI	CCANNNNNNTGG	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	423
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	291, 451
BtsIMutI	CAGTG	4 cut(s)	103, 132, 270, 271
BveI	ACCTGC	1 cut(s)	393
CaiI	CAGNNNCTG	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	16, 28
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	2 cut(s)	130, 322
CviAII	CATG	1 cut(s)	454
CviJI	RGCY	5 cut(s)	25, 74, 102, 508, 515
CviKI_1	RGCY	5 cut(s)	25, 74, 102, 508, 515
CviQI	GTAC	2 cut(s)	130, 322
DdeI	CTNAG	2 cut(s)	95, 516
DpnI	GATC	4 cut(s)	11, 142, 327, 425
DpnII	GATC	4 cut(s)	9, 140, 325, 423
EaeI	YGGCCR	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	16, 28
Eco57I	CTGAAG	1 cut(s)	247
EcoRII	CCWGG	3 cut(s)	294, 376, 465
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	1 cut(s)	457
FaiI	YATR	4 cut(s)	243, 345, 455, 477
FatI	CATG	1 cut(s)	453
Fnu4HI	GCNGC	1 cut(s)	506
FokI	GGATG	2 cut(s)	278, 458
Fsp4HI	GCNGC	1 cut(s)	506
GluI	GCNGC	1 cut(s)	506
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	1 cut(s)	427
HgaI	GACGC	1 cut(s)	362
Hin1II	CATG	1 cut(s)	457
HinfI	GANTC	3 cut(s)	63, 315, 487
HpaII	CCGG	1 cut(s)	427
HphI	GGTGA	2 cut(s)	59, 175
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	1 cut(s)	140
Hpy188III	TCNNGA	2 cut(s)	19, 67
Hpy8I	GTNNAC	1 cut(s)	132
Hpy99I	CGWCG	3 cut(s)	47, 399, 402
HpyAV	CCTTC	3 cut(s)	223, 249, 339
HpyCH4III	ACNGT	2 cut(s)	136, 187
HpyCH4IV	ACGT	2 cut(s)	180, 360
HpyCH4V	TGCA	2 cut(s)	208, 408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	414
HpyF3I	CTNAG	2 cut(s)	95, 516
HpySE526I	ACGT	2 cut(s)	180, 360
Hsp92II	CATG	1 cut(s)	457
Kzo9I	GATC	4 cut(s)	9, 140, 325, 423
LmnI	GCTCC	3 cut(s)	88, 298, 370
LweI	GCATC	2 cut(s)	300, 439
MaeII	ACGT	2 cut(s)	180, 360
MaeIII	GTNAC	5 cut(s)	176, 181, 266, 436, 498
MalI	GATC	4 cut(s)	11, 142, 327, 425
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	4 cut(s)	9, 140, 325, 423
MboII	GAAGA	1 cut(s)	178
MflI	RGATCY	1 cut(s)	423
MhlI	GDGCHC	1 cut(s)	303
MlsI	TGGCCA	1 cut(s)	102
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	57
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	4 cut(s)	41, 85, 183, 472
Mox20I	TGGCCA	1 cut(s)	102
MroXI	GAANNNNTTC	1 cut(s)	461
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	1 cut(s)	492
Msp20I	TGGCCA	1 cut(s)	102
MspI	CCGG	1 cut(s)	427
MspR9I	CCNGG	3 cut(s)	296, 378, 467
MvaI	CCWGG	3 cut(s)	296, 378, 467
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	1 cut(s)	414
NdeII	GATC	4 cut(s)	9, 140, 325, 423
NlaIII	CATG	1 cut(s)	457
NlaIV	GGNNCC	2 cut(s)	425, 464
NmuCI	GTSAC	4 cut(s)	181, 266, 436, 498
PaqCI	CACCTGC	1 cut(s)	393
PcsI	WCGNNNNNNNCGW	1 cut(s)	391
PdmI	GAANNNNTTC	1 cut(s)	461
PfeI	GAWTC	2 cut(s)	315, 487
PflMI	CCANNNNNTGG	2 cut(s)	25, 459
PfoI	TCCNGGA	1 cut(s)	294
PkrI	GCNGC	1 cut(s)	507
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
Psp6I	CCWGG	3 cut(s)	294, 376, 465
PspGI	CCWGG	3 cut(s)	294, 376, 465
PspN4I	GGNNCC	2 cut(s)	425, 464
PspPI	GGNCC	2 cut(s)	16, 28
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	423
RsaI	GTAC	2 cut(s)	131, 323
RsaNI	GTAC	2 cut(s)	130, 322
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	1 cut(s)	506
Sau3AI	GATC	4 cut(s)	9, 140, 325, 423
Sau96I	GGNCC	2 cut(s)	16, 28
SchI	GAGTC	1 cut(s)	57
ScrFI	CCNGG	3 cut(s)	296, 378, 467
SduI	GDGCHC	1 cut(s)	303
SfaNI	GCATC	2 cut(s)	300, 439
SinI	GGWCC	2 cut(s)	16, 28
SsiI	CCGC	1 cut(s)	54
StyD4I	CCNGG	3 cut(s)	294, 376, 465
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	136, 187
TaiI	ACGT	2 cut(s)	183, 363
TfiI	GAWTC	2 cut(s)	315, 487
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	4 cut(s)	103, 139, 271, 277
TseFI	GTSAC	4 cut(s)	181, 266, 436, 498
TseI	GCWGC	1 cut(s)	505
Tsp45I	GTSAC	4 cut(s)	181, 266, 436, 498
TspDTI	ATGAA	1 cut(s)	470
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	4 cut(s)	103, 139, 271, 277
Van91I	CCANNNNNTGG	2 cut(s)	25, 459
VpaK11BI	GGWCC	2 cut(s)	16, 28
XmnI	GAANNNNTTC	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.