Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004139

Physical Location & Seq

Genomic Coordinates Reverse (-)

18564992 .. 18566582

Gene Structure 1591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G45775.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAGGGACATTAAGGTTCAGAAACTTGTTCTCAACATTTCCGTTGGTGAGAGTGGTGATCGTCTCACTCGTGCCTCCAAGGTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGGCGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGTGTTATGTGACTGTGAGAGGTGAGAAGGCAATGCAGCTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTTAGGAGGAACTTCAGTGACACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAGTACGATCCTTCCACTGGTATCTACGGAATGGACTTTTACGTTGTCCTTGAACGCCCAGGATATCGTGTGGCTCGCCGCCGTAGATGCAAGACTCGTGTTGGTATTCAACACAGAGTAACCAAGGATGATGCAATGAAATGGTTCCAGGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAACATCACTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

172

Amino Acids

19.77

Weight (kDa)

9.93

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	9 - 62	1.1e-20	Ribosomal protein L5
Ribosomal_L5_C	PF00673	66 - 164	1.2e-18	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42740 AT3G58700 AT4G18730 AT5G45775 AT5G45775
fragaria_vesca	FvH4_3g07450
malus_domestica	MD05G1297100.v1.1 MD09G1235900.v1.1 MD10G1276900.v1.1 MD17G1264500.v1.1
prunus_persica	Prupe.3G113800_v2.0.a1 Prupe.4G065200_v2.0.a1 Prupe.4G065200_v2.0.a1
pyrus_communis	pycom05g27530 pycom09g15380 pycom17g26430
rosa_chinensis	RchiOBHm_Chr2g0130711 RchiOBHm_Chr5g0011401
rosa_laevigata	RLG00000019145 RLG00000028308 RLG00000031830
rosa_multiflora	Rmu_sc0000334.1_g000013 Rmu_sc0009975.1_g000014
rosa_roxburghii	Rroxscaffold_2G00113620
rosa_rugosa	Rorug02G0292800 Rorug02G0292800 Rorug04G0456900
rosa_samantha	Rh2DG370900 Rh5AG088600 Rh5DG083600 Rh7BG149800
rosa_wichuraiana	Rw2G027520 Rw5G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	397
AclWI	GGATC	1 cut(s)	320
AcuI	CTGAAG	1 cut(s)	247
AfaI	GTAC	2 cut(s)	131, 323
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	3 cut(s)	229, 371, 428
AjnI	CCWGG	2 cut(s)	376, 465
AluBI	AGCT	3 cut(s)	94, 211, 247
AluI	AGCT	3 cut(s)	94, 211, 247
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	2 cut(s)	68, 504
AlwI	GGATC	1 cut(s)	320
ApeKI	GCWGC	2 cut(s)	91, 208
Asp700I	GAANNNNTTC	1 cut(s)	461
AsuHPI	GGTGA	3 cut(s)	59, 68, 206
BauI	CACGAG	2 cut(s)	69, 414
BbsI	GAAGAC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	2 cut(s)	103, 220
BceAI	ACGGC	1 cut(s)	384
BciT130I	CCWGG	2 cut(s)	378, 467
BciVI	GTATCC	1 cut(s)	302
BcoDI	GTCTC	2 cut(s)	68, 504
BfuI	GTATCC	1 cut(s)	302
BisI	GCNGC	3 cut(s)	92, 209, 397
BlsI	GCNGC	3 cut(s)	93, 210, 398
Bme1390I	CCNGG	2 cut(s)	378, 467
BmiI	GGNNCC	1 cut(s)	464
BmrFI	CCNGG	2 cut(s)	378, 467
BmsI	GCATC	2 cut(s)	395, 439
BpiI	GAAGAC	1 cut(s)	106
BplI	GAGNNNNNCTC	2 cut(s)	474, 506
BpuEI	CTTGAG	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	78, 376, 441
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse1I	ACTGG	3 cut(s)	277, 340, 517
Bse3DI	GCAATG	2 cut(s)	210, 459
BseBI	CCWGG	2 cut(s)	378, 467
BseDI	CCNNGG	3 cut(s)	78, 376, 441
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMI	GCAATG	2 cut(s)	210, 459
BseMII	CTCAG	2 cut(s)	109, 515
BseNI	ACTGG	3 cut(s)	277, 340, 517
BseXI	GCAGC	2 cut(s)	103, 220
BsiHKAI	GWGCWC	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	2 cut(s)	68, 504
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	3 cut(s)	58, 307, 325
BspACI	CCGC	1 cut(s)	397
BspCNI	CTCAG	2 cut(s)	108, 514
BspLI	GGNNCC	1 cut(s)	464
BspPI	GGATC	1 cut(s)	320
BsrDI	GCAATG	2 cut(s)	210, 459
BsrI	ACTGG	3 cut(s)	277, 340, 517
BssECI	CCNNGG	3 cut(s)	78, 376, 441
BssMI	GATC	3 cut(s)	58, 307, 325
BssSI	CACGAG	2 cut(s)	69, 414
BssT1I	CCWWGG	2 cut(s)	78, 441
Bst2BI	CACGAG	2 cut(s)	69, 414
Bst2UI	CCWGG	2 cut(s)	378, 467
Bst4CI	ACNGT	2 cut(s)	136, 187
BstC8I	GCNNGC	1 cut(s)	394
BstDEI	CTNAG	4 cut(s)	95, 120, 251, 501
BstF5I	GGATG	1 cut(s)	451
BstKTI	GATC	3 cut(s)	61, 310, 328
BstMAI	GTCTC	2 cut(s)	68, 504
BstMBI	GATC	3 cut(s)	58, 307, 325
BstMWI	GCNNNNNNNGC	1 cut(s)	405
BstNI	CCWGG	2 cut(s)	378, 467
BstSCI	CCNGG	2 cut(s)	376, 465
BstV1I	GCAGC	2 cut(s)	103, 220
BstV2I	GAAGAC	1 cut(s)	106
BstXI	CCANNNNNNTGG	1 cut(s)	85
BsuI	GTATCC	1 cut(s)	302
BtsCI	GGATG	1 cut(s)	451
BtsIMutI	CAGTG	6 cut(s)	103, 132, 270, 271, 333, 510
Cac8I	GCNNGC	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	130, 322
CviJI	RGCY	4 cut(s)	94, 211, 247, 392
CviKI_1	RGCY	4 cut(s)	94, 211, 247, 392
CviQI	GTAC	2 cut(s)	130, 322
DdeI	CTNAG	4 cut(s)	95, 120, 251, 501
DpnI	GATC	3 cut(s)	60, 309, 327
DpnII	GATC	3 cut(s)	58, 307, 325
Eco130I	CCWWGG	2 cut(s)	78, 441
Eco32I	GATATC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	247
EcoRII	CCWGG	2 cut(s)	376, 465
EcoRV	GATATC	1 cut(s)	383
EcoT14I	CCWWGG	2 cut(s)	78, 441
ErhI	CCWWGG	2 cut(s)	78, 441
Esp3I	CGTCTC	1 cut(s)	68
FaiI	YATR	3 cut(s)	180, 243, 477
FaqI	GGGAC	1 cut(s)	20
Fnu4HI	GCNGC	3 cut(s)	92, 209, 397
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	3 cut(s)	92, 209, 397
GluI	GCNGC	3 cut(s)	92, 209, 397
HinfI	GANTC	2 cut(s)	315, 412
HphI	GGTGA	3 cut(s)	59, 68, 206
Hpy166II	GTNNAC	2 cut(s)	101, 132
Hpy188I	TCNGA	2 cut(s)	21, 504
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	2 cut(s)	101, 132
HpyAV	CCTTC	3 cut(s)	193, 339, 473
HpyCH4III	ACNGT	2 cut(s)	136, 187
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	3 cut(s)	208, 408, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	405
HpyF3I	CTNAG	4 cut(s)	95, 120, 251, 501
HpySE526I	ACGT	1 cut(s)	360
Kzo9I	GATC	3 cut(s)	58, 307, 325
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	9 cut(s)	123, 139, 258, 321, 363, 390, 452, 479, 498
Lsp1109I	GCAGC	2 cut(s)	103, 220
LweI	GCATC	2 cut(s)	395, 439
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	3 cut(s)	181, 266, 436
MalI	GATC	3 cut(s)	60, 309, 327
MboI	GATC	3 cut(s)	58, 307, 325
MboII	GAAGA	2 cut(s)	106, 178
MhlI	GDGCHC	1 cut(s)	303
MlyI	GAGTC	1 cut(s)	406
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	6 cut(s)	85, 120, 132, 185, 249, 500
MroXI	GAANNNNTTC	1 cut(s)	461
MseI	TTAA	3 cut(s)	12, 234, 517
MspR9I	CCNGG	2 cut(s)	378, 467
MvaI	CCWGG	2 cut(s)	378, 467
MwoI	GCNNNNNNNGC	1 cut(s)	405
NdeII	GATC	3 cut(s)	58, 307, 325
NlaIV	GGNNCC	1 cut(s)	464
NmuCI	GTSAC	2 cut(s)	181, 266
PcsI	WCGNNNNNNNCGW	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	315
PkrI	GCNGC	3 cut(s)	93, 210, 398
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Psp6I	CCWGG	2 cut(s)	376, 465
PspGI	CCWGG	2 cut(s)	376, 465
PspN4I	GGNNCC	1 cut(s)	464
RsaI	GTAC	2 cut(s)	131, 323
RsaNI	GTAC	2 cut(s)	130, 322
SaqAI	TTAA	3 cut(s)	12, 234, 517
SatI	GCNGC	3 cut(s)	92, 209, 397
Sau3AI	GATC	3 cut(s)	58, 307, 325
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	2 cut(s)	378, 467
SduI	GDGCHC	1 cut(s)	303
SfaNI	GCATC	2 cut(s)	395, 439
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SsiI	CCGC	1 cut(s)	397
StyD4I	CCNGG	2 cut(s)	376, 465
StyI	CCWWGG	2 cut(s)	78, 441
TaaI	ACNGT	2 cut(s)	136, 187
TaiI	ACGT	1 cut(s)	363
TauI	GCSGC	1 cut(s)	399
TfiI	GAWTC	1 cut(s)	315
Tru1I	TTAA	3 cut(s)	12, 234, 517
Tru9I	TTAA	3 cut(s)	12, 234, 517
TscAI	CASTG	6 cut(s)	103, 139, 271, 277, 340, 517
TseFI	GTSAC	2 cut(s)	181, 266
TseI	GCWGC	2 cut(s)	91, 208
Tsp45I	GTSAC	2 cut(s)	181, 266
TspDTI	ATGAA	2 cut(s)	470, 492
TspGWI	ACGGA	2 cut(s)	31, 360
TspRI	CASTG	6 cut(s)	103, 139, 271, 277, 340, 517
XmnI	GAANNNNTTC	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.