Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004139

Physical Location & Seq

Genomic Coordinates Reverse (-)

28505120 .. 28506647

Gene Structure 1528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCGTCGGAGAGCAAGCTGGCGAATCCCATGAGGGAAATCAAGGTTCAGAAGCTCGTCCTCAACATCTCCGTCGGAGAAAGCGGCGATCGTCTCACCAGAGCCGCCAAGGTCTTGGAGCAGCTCAGTGGCCAGACCCCTGTCTTCTCCAAAGCTCGGTACACTGTGAGGTCCTTCGGGATCAGGCGTAACGAGAAGATTGCCTGCTACGTGACTGTCCGCGGCGATAAGGCAATGCAGCTTTTGGAGAGTGGACTGAAGGTCAAGGAATACGAGCTGTTGCGCAGGAACTTCAGCGACACCGGATGCTTTGGTTTCGGTATTCAGGAACATATCGATCTCGGAATCAAGTATGACCCTTCTACCGGTATCTATGGTATGGACTTCTTTGTCGTTCTAGAGCGCCCAGGGTACCGTGTGGGACGTCGCCGCAGATGCAAGTCGCGTGTTGGCATTCAGCACAGGGTTACCAAGGAGGACGCAATGAAGTGGTTCCAGGTCAAATATGAAGGAGTCATCCTCAACAAGTCCCAAAATATTACCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

183

Amino Acids

20.76

Weight (kDa)

9.93

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42740 AT3G58700 AT4G18730 AT5G45775 AT5G45775
fragaria_vesca	FvH4_3g07450
malus_domestica	MD05G1297100.v1.1 MD09G1235900.v1.1 MD10G1276900.v1.1 MD17G1264500.v1.1
prunus_persica	Prupe.3G113800_v2.0.a1 Prupe.4G065200_v2.0.a1 Prupe.4G065200_v2.0.a1
pyrus_communis	pycom05g27530 pycom09g15380 pycom17g26430
rosa_chinensis	RchiOBHm_Chr2g0130711 RchiOBHm_Chr5g0011401
rosa_laevigata	RLG00000019145 RLG00000028308 RLG00000031830
rosa_multiflora	Rmu_sc0000334.1_g000013 Rmu_sc0009975.1_g000014
rosa_roxburghii	Rroxscaffold_2G00113620
rosa_rugosa	Rorug02G0292800 Rorug02G0292800 Rorug04G0456900
rosa_samantha	Rh2DG370900 Rh5AG088600 Rh5DG083600 Rh7BG149800
rosa_wichuraiana	Rw2G027520 Rw5G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	389
AatII	GACGTC	1 cut(s)	427
Acc16I	TGCGCA	1 cut(s)	284
Acc65I	GGTACC	1 cut(s)	411
AccB1I	GGYRCC	1 cut(s)	411
AccII	CGCG	2 cut(s)	222, 445
AciI	CCGC	5 cut(s)	84, 105, 220, 222, 430
AclWI	GGATC	1 cut(s)	188
AcoI	YGGCCR	1 cut(s)	130
AcuI	CTGAAG	2 cut(s)	277, 278
AcyI	GRCGYC	2 cut(s)	5, 424
AfaI	GTAC	2 cut(s)	161, 413
AfiI	CCNNNNNNNGG	2 cut(s)	156, 365
AgeI	ACCGGT	1 cut(s)	365
AhdI	GACNNNNNGTC	1 cut(s)	260
AjnI	CCWGG	2 cut(s)	406, 495
AluBI	AGCT	6 cut(s)	19, 55, 124, 155, 241, 277
AluI	AGCT	6 cut(s)	19, 55, 124, 155, 241, 277
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	121, 238
AsiGI	ACCGGT	1 cut(s)	365
Asp700I	GAANNNNTTC	1 cut(s)	491
Asp718I	GGTACC	1 cut(s)	411
AspLEI	GCGC	2 cut(s)	285, 405
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	171
BalI	TGGCCA	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	411
BbsI	GAAGAC	1 cut(s)	136
BbvI	GCAGC	2 cut(s)	133, 250
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciT130I	CCWGG	2 cut(s)	408, 497
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	2 cut(s)	398, 547
BfoI	RGCGCY	1 cut(s)	406
BisI	GCNGC	6 cut(s)	85, 105, 122, 223, 239, 430
BlsI	GCNGC	6 cut(s)	86, 106, 123, 224, 240, 431
Bme1390I	CCNGG	2 cut(s)	408, 497
Bme18I	GGWCC	1 cut(s)	171
BmeRI	GACNNNNNGTC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	2 cut(s)	413, 494
BmrFI	CCNGG	2 cut(s)	408, 497
BmsI	GCATC	2 cut(s)	296, 425
BoxI	GACNNNNGTC	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	136
BplI	GAGNNNNNCTC	2 cut(s)	504, 536
Bsa29I	ATCGAT	1 cut(s)	336
BsaAI	YACGTR	1 cut(s)	211
BsaHI	GRCGYC	2 cut(s)	5, 424
BsaJI	CCNNGG	5 cut(s)	108, 220, 406, 407, 471
BsaWI	WCCGGW	2 cut(s)	302, 365
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 365
Bse118I	RCCGGY	2 cut(s)	365, 542
Bse3DI	GCAATG	2 cut(s)	240, 489
BseBI	CCWGG	2 cut(s)	408, 497
BseCI	ATCGAT	1 cut(s)	336
BseDI	CCNNGG	5 cut(s)	108, 220, 406, 407, 471
BseGI	GGATG	2 cut(s)	311, 516
BseLI	CCNNNNNNNGG	2 cut(s)	156, 365
BseMI	GCAATG	2 cut(s)	240, 489
BseMII	CTCAG	1 cut(s)	139
BseXI	GCAGC	2 cut(s)	133, 250
Bsh1236I	CGCG	2 cut(s)	222, 445
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	411
BshTI	ACCGGT	1 cut(s)	365
BshVI	ATCGAT	1 cut(s)	336
BsiEI	CGRYCG	1 cut(s)	91
BsiSI	CCGG	3 cut(s)	303, 366, 543
BslFI	GGGAC	2 cut(s)	435, 514
BslI	CCNNNNNNNGG	2 cut(s)	156, 365
BsmAI	GTCTC	1 cut(s)	98
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	2 cut(s)	435, 514
BsmI	GAATGC	1 cut(s)	453
BsnI	GGCC	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	88, 180, 337
BspACI	CCGC	5 cut(s)	84, 105, 220, 222, 430
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	138
BspDI	ATCGAT	1 cut(s)	336
BspFNI	CGCG	2 cut(s)	222, 445
BspLI	GGNNCC	2 cut(s)	413, 494
BspPI	GGATC	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	411
BsrDI	GCAATG	2 cut(s)	240, 489
BsrFI	RCCGGY	2 cut(s)	365, 542
BssAI	RCCGGY	2 cut(s)	365, 542
BssECI	CCNNGG	5 cut(s)	108, 220, 406, 407, 471
BssMI	GATC	3 cut(s)	88, 180, 337
BssNI	GRCGYC	2 cut(s)	5, 424
BssT1I	CCWWGG	2 cut(s)	108, 471
Bst2UI	CCWGG	2 cut(s)	408, 497
Bst4CI	ACNGT	3 cut(s)	166, 217, 416
BstACI	GRCGYC	2 cut(s)	5, 424
BstBAI	YACGTR	1 cut(s)	211
BstC8I	GCNNGC	3 cut(s)	17, 21, 205
BstDEI	CTNAG	1 cut(s)	125
BstDSI	CCRYGG	1 cut(s)	220
BstEII	GGTNACC	1 cut(s)	466
BstF5I	GGATG	2 cut(s)	311, 516
BstFNI	CGCG	2 cut(s)	222, 445
BstH2I	RGCGCY	1 cut(s)	406
BstHHI	GCGC	2 cut(s)	285, 405
BstKTI	GATC	3 cut(s)	91, 183, 340
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	3 cut(s)	88, 180, 337
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	435
BstNI	CCWGG	2 cut(s)	408, 497
BstPAI	GACNNNNGTC	1 cut(s)	140
BstPI	GGTNACC	1 cut(s)	466
BstSCI	CCNGG	2 cut(s)	406, 495
BstUI	CGCG	2 cut(s)	222, 445
BstV1I	GCAGC	2 cut(s)	133, 250
BstV2I	GAAGAC	1 cut(s)	136
BstXI	CCANNNNNNTGG	1 cut(s)	115
Bsu15I	ATCGAT	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	132
BsuTUI	ATCGAT	1 cut(s)	336
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	311, 516
BtsIMutI	CAGTG	2 cut(s)	133, 162
Cac8I	GCNNGC	3 cut(s)	17, 21, 205
CfoI	GCGC	2 cut(s)	285, 405
Cfr10I	RCCGGY	2 cut(s)	365, 542
Cfr13I	GGNCC	1 cut(s)	171
Cfr42I	CCGCGG	1 cut(s)	223
ClaI	ATCGAT	1 cut(s)	336
CseI	GACGC	1 cut(s)	488
Csp6I	GTAC	2 cut(s)	160, 412
CspAI	ACCGGT	1 cut(s)	365
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	9 cut(s)	19, 55, 104, 124, 132, 155, 241, 277, 546
CviKI_1	RGCY	9 cut(s)	19, 55, 104, 124, 132, 155, 241, 277, 546
CviQI	GTAC	2 cut(s)	160, 412
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	3 cut(s)	90, 182, 339
DpnII	GATC	3 cut(s)	88, 180, 337
DrdI	GACNNNNNNGTC	1 cut(s)	389
DriI	GACNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	389
EaeI	YGGCCR	1 cut(s)	130
Eam1105I	GACNNNNNGTC	1 cut(s)	260
Eco130I	CCWWGG	2 cut(s)	108, 471
Eco47I	GGWCC	1 cut(s)	171
Eco57I	CTGAAG	2 cut(s)	277, 278
Eco91I	GGTNACC	1 cut(s)	466
EcoO109I	RGGNCCY	1 cut(s)	171
EcoO65I	GGTNACC	1 cut(s)	466
EcoRII	CCWGG	2 cut(s)	406, 495
EcoT14I	CCWWGG	2 cut(s)	108, 471
ErhI	CCWWGG	2 cut(s)	108, 471
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	1 cut(s)	34
FaiI	YATR	6 cut(s)	32, 333, 354, 375, 380, 507
FaqI	GGGAC	2 cut(s)	435, 514
FatI	CATG	1 cut(s)	30
Fnu4HI	GCNGC	6 cut(s)	85, 105, 122, 223, 239, 430
FokI	GGATG	2 cut(s)	318, 503
Fsp4HI	GCNGC	6 cut(s)	85, 105, 122, 223, 239, 430
FspBI	CTAG	2 cut(s)	398, 547
FspI	TGCGCA	1 cut(s)	284
GlaI	GCGC	2 cut(s)	284, 404
GluI	GCNGC	6 cut(s)	85, 105, 122, 223, 239, 430
HaeII	RGCGCY	1 cut(s)	406
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	3 cut(s)	303, 366, 543
HgaI	GACGC	1 cut(s)	488
HhaI	GCGC	2 cut(s)	285, 405
Hin1I	GRCGYC	2 cut(s)	5, 424
Hin1II	CATG	1 cut(s)	34
Hin6I	GCGC	2 cut(s)	283, 403
HinP1I	GCGC	2 cut(s)	283, 403
HinfI	GANTC	3 cut(s)	25, 345, 513
HpaII	CCGG	3 cut(s)	303, 366, 543
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	162, 254
Hpy188I	TCNGA	4 cut(s)	10, 51, 77, 344
Hpy188III	TCNNGA	3 cut(s)	178, 326, 398
Hpy8I	GTNNAC	2 cut(s)	162, 254
Hpy99I	CGWCG	3 cut(s)	10, 77, 429
HpyAV	CCTTC	4 cut(s)	184, 253, 369, 503
HpyCH4III	ACNGT	3 cut(s)	166, 217, 416
HpyCH4IV	ACGT	2 cut(s)	210, 424
HpyCH4V	TGCA	2 cut(s)	238, 438
HpyF10VI	GCNNNNNNNGC	1 cut(s)	435
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	2 cut(s)	210, 424
Hsp92I	GRCGYC	2 cut(s)	5, 424
Hsp92II	CATG	1 cut(s)	34
HspAI	GCGC	2 cut(s)	283, 403
KpnI	GGTACC	1 cut(s)	415
KspI	CCGCGG	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	88, 180, 337
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	2 cut(s)	133, 250
LweI	GCATC	2 cut(s)	296, 425
MaeI	CTAG	2 cut(s)	398, 547
MaeII	ACGT	2 cut(s)	210, 424
MaeIII	GTNAC	3 cut(s)	188, 211, 466
MalI	GATC	3 cut(s)	90, 182, 339
MboI	GATC	3 cut(s)	88, 180, 337
MboII	GAAGA	2 cut(s)	136, 208
MlsI	TGGCCA	1 cut(s)	132
MluNI	TGGCCA	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	522
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	5 cut(s)	27, 71, 162, 469, 530
Mox20I	TGGCCA	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	491
MscI	TGGCCA	1 cut(s)	132
Msp20I	TGGCCA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	222
MspI	CCGG	3 cut(s)	303, 366, 543
MspR9I	CCNGG	2 cut(s)	408, 497
Mva1269I	GAATGC	1 cut(s)	453
MvaI	CCWGG	2 cut(s)	408, 497
MvnI	CGCG	2 cut(s)	222, 445
MwoI	GCNNNNNNNGC	1 cut(s)	435
NdeII	GATC	3 cut(s)	88, 180, 337
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	2 cut(s)	413, 494
NmuCI	GTSAC	1 cut(s)	211
NsbI	TGCGCA	1 cut(s)	284
PasI	CCCWGGG	1 cut(s)	407
PctI	GAATGC	1 cut(s)	453
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	2 cut(s)	25, 345
PinAI	ACCGGT	1 cut(s)	365
PkrI	GCNGC	6 cut(s)	86, 106, 123, 224, 240, 431
Ple19I	CGATCG	1 cut(s)	91
PleI	GAGTC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	521
Ppu21I	YACGTR	1 cut(s)	211
PpuMI	RGGWCCY	1 cut(s)	171
PshAI	GACNNNNGTC	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	171
Psp6I	CCWGG	2 cut(s)	406, 495
PspEI	GGTNACC	1 cut(s)	466
PspGI	CCWGG	2 cut(s)	406, 495
PspN4I	GGNNCC	2 cut(s)	413, 494
PspPI	GGNCC	1 cut(s)	171
PspPPI	RGGWCCY	1 cut(s)	171
PvuI	CGATCG	1 cut(s)	91
RsaI	GTAC	2 cut(s)	161, 413
RsaNI	GTAC	2 cut(s)	160, 412
SacII	CCGCGG	1 cut(s)	223
SatI	GCNGC	6 cut(s)	85, 105, 122, 223, 239, 430
Sau3AI	GATC	3 cut(s)	88, 180, 337
Sau96I	GGNCC	1 cut(s)	171
SchI	GAGTC	1 cut(s)	522
ScrFI	CCNGG	2 cut(s)	408, 497
SfaNI	GCATC	2 cut(s)	296, 425
Sfr303I	CCGCGG	1 cut(s)	223
SgrBI	CCGCGG	1 cut(s)	223
SinI	GGWCC	1 cut(s)	171
SsiI	CCGC	5 cut(s)	84, 105, 220, 222, 430
SspI	AATATT	1 cut(s)	538
SspMI	CTAG	2 cut(s)	398, 547
StyD4I	CCNGG	2 cut(s)	406, 495
StyI	CCWWGG	2 cut(s)	108, 471
TaaI	ACNGT	3 cut(s)	166, 217, 416
TaiI	ACGT	2 cut(s)	213, 427
TaqI	TCGA	1 cut(s)	336
TauI	GCSGC	4 cut(s)	87, 107, 225, 432
TfiI	GAWTC	2 cut(s)	25, 345
TscAI	CASTG	2 cut(s)	133, 169
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	2 cut(s)	121, 238
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	500, 522
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	2 cut(s)	133, 169
VpaK11BI	GGWCC	1 cut(s)	171
XbaI	TCTAGA	1 cut(s)	397
XmnI	GAANNNNTTC	1 cut(s)	491
XspI	CTAG	2 cut(s)	398, 547
ZraI	GACGTC	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.