Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004139

Physical Location & Seq

Genomic Coordinates Reverse (-)

47305162 .. 47306792

Gene Structure 1631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019145

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCTTCGGAGAAGAAGTTAGCGAACCCCATGAGGGAAATCAAGGTCCAGAAGCTGGTCCTCAATATCTCTGTGGGCGAGAGCGGTGATCGACTCACCAGAGCCGCGAAGGTGTTGGAGCAACTCAGTGGCCAAACCCCTGTTTTTTCCAAAGCAAGGTACACTGTTCGGAGCTTTGGCATCAGGCGTAATGAGAAGATTGCCTGCTACGTCACTGTCAGGGGTGAAAAGGCCATGTCACTTCTGGAGAGTGGGTTGAAGGTCAAGGAATACGAGTTGCTCCGAAAGAACTTTAGTGATACTGGTTGCTTTGGCTTTGGTATCCAGGAGCACATTGATCTGGGAATCAAGTATGATCCTTCTACTGGTATTTATGGAATGGATTTCTATGTTGTTTTGGAACGACCGGGTTATCGTGTGGGTCGTCGTCGTAGATGCAAGTCTCGTGTTGGGATCCAGCACAGGGTCACGAAGGAGGATTCCATGAAGTGGTTCCAGGTCAAATATGAGGGTGTGATCCTTAACAAGTCCCAGCAAGTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

182

Amino Acids

20.7

Weight (kDa)

9.91

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	9 - 62	1.9e-21	Ribosomal protein L5
Ribosomal_L5_C	PF00673	66 - 164	1.3e-18	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42740 AT3G58700 AT4G18730 AT5G45775 AT5G45775
fragaria_vesca	FvH4_3g07450
malus_domestica	MD05G1297100.v1.1 MD09G1235900.v1.1 MD10G1276900.v1.1 MD17G1264500.v1.1
prunus_persica	Prupe.3G113800_v2.0.a1 Prupe.4G065200_v2.0.a1 Prupe.4G065200_v2.0.a1
pyrus_communis	pycom05g27530 pycom09g15380 pycom17g26430
rosa_chinensis	RchiOBHm_Chr2g0130711 RchiOBHm_Chr5g0011401
rosa_laevigata	RLG00000019145 RLG00000028308 RLG00000031830
rosa_multiflora	Rmu_sc0000334.1_g000013 Rmu_sc0009975.1_g000014
rosa_roxburghii	Rroxscaffold_2G00113620
rosa_rugosa	Rorug02G0292800 Rorug02G0292800 Rorug04G0456900
rosa_samantha	Rh2DG370900 Rh5AG088600 Rh5DG083600 Rh7BG149800
rosa_wichuraiana	Rw2G027520 Rw5G007690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	55, 489
AccBSI	CCGCTC	1 cut(s)	84
AccII	CGCG	1 cut(s)	107
AciI	CCGC	2 cut(s)	84, 105
AclWI	GGATC	4 cut(s)	350, 448, 461, 511
AcoI	YGGCCR	1 cut(s)	130
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	6 cut(s)	34, 55, 156, 365, 463, 489
AgsI	TTSAA	1 cut(s)	259
AjnI	CCWGG	2 cut(s)	324, 495
AluBI	AGCT	2 cut(s)	55, 174
AluI	AGCT	2 cut(s)	55, 174
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	4 cut(s)	350, 448, 461, 511
AlwNI	CAGNNNCTG	1 cut(s)	55
AoxI	GGCC	2 cut(s)	130, 231
Asp700I	GAANNNNTTC	1 cut(s)	491
AspS9I	GGNCC	2 cut(s)	46, 58
AsuC2I	CCSGG	1 cut(s)	408
AsuHPI	GGTGA	3 cut(s)	88, 98, 236
AvaII	GGWCC	2 cut(s)	46, 58
BalI	TGGCCA	1 cut(s)	132
BamHI	GGATCC	1 cut(s)	453
BauI	CACGAG	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	333
BciT130I	CCWGG	2 cut(s)	326, 497
BciVI	GTATCC	1 cut(s)	332
BcnI	CCSGG	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	447
BfuI	GTATCC	1 cut(s)	332
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	3 cut(s)	326, 408, 497
Bme18I	GGWCC	2 cut(s)	46, 58
BmgT120I	GGNCC	2 cut(s)	46, 58
BmiI	GGNNCC	2 cut(s)	455, 494
BmrFI	CCNGG	3 cut(s)	326, 408, 497
BmsI	GCATC	2 cut(s)	189, 425
BpmI	CTGGAG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	408
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 239, 269
Bsc4I	CCNNNNNNNGG	6 cut(s)	34, 55, 156, 365, 463, 489
Bse1I	ACTGG	2 cut(s)	307, 370
BseBI	CCWGG	2 cut(s)	326, 497
BseLI	CCNNNNNNNGG	6 cut(s)	34, 55, 156, 365, 463, 489
BseMII	CTCAG	1 cut(s)	139
BseNI	ACTGG	2 cut(s)	307, 370
BseYI	CCCAGC	1 cut(s)	531
Bsh1236I	CGCG	1 cut(s)	107
Bsh1285I	CGRYCG	1 cut(s)	407
BshFI	GGCC	2 cut(s)	132, 233
BsiEI	CGRYCG	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	407
BslFI	GGGAC	1 cut(s)	514
BslI	CCNNNNNNNGG	6 cut(s)	34, 55, 156, 365, 463, 489
BsmAI	GTCTC	1 cut(s)	447
BsmFI	GGGAC	1 cut(s)	514
BsnI	GGCC	2 cut(s)	132, 233
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	5 cut(s)	88, 337, 355, 453, 516
BspACI	CCGC	2 cut(s)	84, 105
BspANI	GGCC	2 cut(s)	132, 233
BspCNI	CTCAG	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	2 cut(s)	455, 494
BspPI	GGATC	4 cut(s)	350, 448, 461, 511
BsrBI	CCGCTC	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	307, 370
BssMI	GATC	5 cut(s)	88, 337, 355, 453, 516
BssSI	CACGAG	1 cut(s)	444
Bst2BI	CACGAG	1 cut(s)	444
Bst2UI	CCWGG	2 cut(s)	326, 497
Bst4CI	ACNGT	2 cut(s)	166, 217
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	2 cut(s)	125, 543
BstFNI	CGCG	1 cut(s)	107
BstKTI	GATC	5 cut(s)	91, 340, 358, 456, 519
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	5 cut(s)	88, 337, 355, 453, 516
BstMCI	CGRYCG	1 cut(s)	407
BstNI	CCWGG	2 cut(s)	326, 497
BstSCI	CCNGG	3 cut(s)	324, 406, 495
BstUI	CGCG	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	453
BsuI	GTATCC	1 cut(s)	332
BsuRI	GGCC	2 cut(s)	132, 233
BtsIMutI	CAGTG	3 cut(s)	133, 162, 213
Cac8I	GCNNGC	1 cut(s)	205
CaiI	CAGNNNCTG	1 cut(s)	55
Cfr13I	GGNCC	2 cut(s)	46, 58
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	3 cut(s)	31, 235, 484
CviJI	RGCY	7 cut(s)	5, 55, 104, 132, 174, 233, 315
CviKI_1	RGCY	7 cut(s)	5, 55, 104, 132, 174, 233, 315
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	2 cut(s)	125, 543
DpnI	GATC	5 cut(s)	90, 339, 357, 455, 518
DpnII	GATC	5 cut(s)	88, 337, 355, 453, 516
EaeI	YGGCCR	1 cut(s)	130
Eco47I	GGWCC	2 cut(s)	46, 58
EcoRII	CCWGG	2 cut(s)	324, 495
FaeI	CATG	3 cut(s)	34, 238, 487
FaiI	YATR	7 cut(s)	32, 236, 354, 375, 390, 485, 507
FaqI	GGGAC	1 cut(s)	514
FatI	CATG	3 cut(s)	30, 234, 483
Fnu4HI	GCNGC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	105
GsaI	CCCAGC	1 cut(s)	535
GsuI	CTGGAG	1 cut(s)	266
HaeIII	GGCC	2 cut(s)	132, 233
HapII	CCGG	1 cut(s)	407
Hin1II	CATG	3 cut(s)	34, 238, 487
HinfI	GANTC	3 cut(s)	93, 345, 479
HpaII	CCGG	1 cut(s)	407
HphI	GGTGA	3 cut(s)	88, 98, 236
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	3 cut(s)	10, 171, 284
Hpy188III	TCNNGA	3 cut(s)	49, 245, 469
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	2 cut(s)	429, 432
HpyAV	CCTTC	4 cut(s)	103, 253, 369, 466
HpyCH4III	ACNGT	2 cut(s)	166, 217
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	1 cut(s)	438
HpyF3I	CTNAG	2 cut(s)	125, 543
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	3 cut(s)	34, 238, 487
Kzo9I	GATC	5 cut(s)	88, 337, 355, 453, 516
LmnI	GCTCC	4 cut(s)	118, 171, 285, 328
LweI	GCATC	2 cut(s)	189, 425
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	3 cut(s)	211, 237, 466
MalI	GATC	5 cut(s)	90, 339, 357, 455, 518
MbiI	CCGCTC	1 cut(s)	84
MboI	GATC	5 cut(s)	88, 337, 355, 453, 516
MboII	GAAGA	2 cut(s)	25, 208
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	1 cut(s)	333
MlsI	TGGCCA	1 cut(s)	132
MluNI	TGGCCA	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	87
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	4 cut(s)	27, 71, 469, 502
Mox20I	TGGCCA	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	491
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	1 cut(s)	522
Msp20I	TGGCCA	1 cut(s)	132
MspI	CCGG	1 cut(s)	407
MspR9I	CCNGG	3 cut(s)	326, 408, 497
MvaI	CCWGG	2 cut(s)	326, 497
MvnI	CGCG	1 cut(s)	107
NciI	CCSGG	1 cut(s)	408
NdeII	GATC	5 cut(s)	88, 337, 355, 453, 516
NlaIII	CATG	3 cut(s)	34, 238, 487
NlaIV	GGNNCC	2 cut(s)	455, 494
NmuCI	GTSAC	3 cut(s)	211, 237, 466
PcsI	WCGNNNNNNNCGW	1 cut(s)	421
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	2 cut(s)	345, 479
PflMI	CCANNNNNTGG	2 cut(s)	55, 489
PfoI	TCCNGGA	1 cut(s)	324
PkrI	GCNGC	1 cut(s)	106
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	324, 495
PspFI	CCCAGC	1 cut(s)	531
PspGI	CCWGG	2 cut(s)	324, 495
PspN4I	GGNNCC	2 cut(s)	455, 494
PspPI	GGNCC	2 cut(s)	46, 58
PstNI	CAGNNNCTG	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	453
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	5 cut(s)	88, 337, 355, 453, 516
Sau96I	GGNCC	2 cut(s)	46, 58
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	3 cut(s)	326, 408, 497
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	8 cut(s)	48, 57, 114, 161, 176, 213, 264, 501
SfaNI	GCATC	2 cut(s)	189, 425
SinI	GGWCC	2 cut(s)	46, 58
SsiI	CCGC	2 cut(s)	84, 105
StyD4I	CCNGG	3 cut(s)	324, 406, 495
TaaI	ACNGT	2 cut(s)	166, 217
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	1 cut(s)	91
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	2 cut(s)	345, 479
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	3 cut(s)	133, 169, 220
TseFI	GTSAC	3 cut(s)	211, 237, 466
Tsp45I	GTSAC	3 cut(s)	211, 237, 466
TspDTI	ATGAA	1 cut(s)	500
TspRI	CASTG	3 cut(s)	133, 169, 220
Van91I	CCANNNNNTGG	2 cut(s)	55, 489
VpaK11BI	GGWCC	2 cut(s)	46, 58
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.