Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G43010 AT2G43010 AT2G43010 AT2G43010 AT2G43010 AT3G59060 AT3G59060 AT3G59060 AT3G59060 |
| fragaria_vesca | FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 |
| malus_domestica | MD09G1146000.v1.1 MD17G1132600.v1.1 |
| prunus_persica | Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 |
| pyrus_communis | pycom09g06630 pycom17g12610 |
| rosa_chinensis | RchiOBHm_Chr2g0152511 |
| rosa_laevigata | RLG00000020642 |
| rosa_multiflora | Rmu_sc0005366.1_g000001 Rmu_sc0027733.1_g000001 Rmu_sc0027737.1_g000001 Rmu_sc0034754.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00095640 |
| rosa_rugosa | Rorug02G0434000 Rorug02G0434100 Rorug02G0434200 |
| rosa_samantha | Rh2AG495400 Rh2BG507300 Rh2CG481500 Rh2CG481600 Rh2DG518600 |
| rosa_wichuraiana | Rw2G040760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1233 |
| AccII | CGCG | 1 cut(s) | 1178 |
| AciI | CCGC | 7 cut(s) | 498, 959, 962, 965, 968, 1176, 1223 |
| AclWI | GGATC | 8 cut(s) | 177, 217, 230, 287, 300, 760, 824, 1071 |
| AcsI | RAATTY | 2 cut(s) | 413, 427 |
| AcuI | CTGAAG | 2 cut(s) | 798, 902 |
| AfaI | GTAC | 3 cut(s) | 467, 1038, 1113 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 801, 1108 |
| AgeI | ACCGGT | 1 cut(s) | 1134 |
| AgsI | TTSAA | 4 cut(s) | 200, 910, 932, 1001 |
| AhlI | ACTAGT | 1 cut(s) | 79 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 96, 128, 572, 604 |
| AluBI | AGCT | 5 cut(s) | 571, 618, 776, 878, 928 |
| AluI | AGCT | 5 cut(s) | 571, 618, 776, 878, 928 |
| Alw26I | GTCTC | 4 cut(s) | 220, 298, 311, 535 |
| AlwI | GGATC | 8 cut(s) | 177, 217, 230, 287, 300, 760, 824, 1071 |
| AoxI | GGCC | 3 cut(s) | 65, 372, 1173 |
| ApeKI | GCWGC | 3 cut(s) | 615, 773, 1189 |
| ApoI | RAATTY | 2 cut(s) | 413, 427 |
| AsiGI | ACCGGT | 1 cut(s) | 1134 |
| AspS9I | GGNCC | 2 cut(s) | 485, 1285 |
| AsuC2I | CCSGG | 4 cut(s) | 993, 1034, 1089, 1109 |
| AsuHPI | GGTGA | 1 cut(s) | 1209 |
| AsuII | TTCGAA | 1 cut(s) | 252 |
| AvaII | GGWCC | 2 cut(s) | 485, 1285 |
| AxyI | CCTNAGG | 1 cut(s) | 369 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1138, 1171 |
| BamHI | GGATCC | 2 cut(s) | 222, 292 |
| BanII | GRGCYC | 1 cut(s) | 1034 |
| BbsI | GAAGAC | 2 cut(s) | 249, 1268 |
| BbvCI | CCTCAGC | 1 cut(s) | 1005 |
| BbvI | GCAGC | 3 cut(s) | 627, 785, 1201 |
| BccI | CCATC | 4 cut(s) | 95, 517, 937, 1189 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1121, 1155, 1168, 1202 |
| BcnI | CCSGG | 4 cut(s) | 993, 1034, 1089, 1109 |
| BcoDI | GTCTC | 4 cut(s) | 220, 298, 311, 535 |
| BcuI | ACTAGT | 1 cut(s) | 79 |
| BfaI | CTAG | 5 cut(s) | 80, 489, 645, 1143, 1291 |
| BfmI | CTRYAG | 2 cut(s) | 116, 859 |
| BglII | AGATCT | 1 cut(s) | 56 |
| BisI | GCNGC | 8 cut(s) | 616, 774, 960, 963, 966, 969, 1176, 1190 |
| BlsI | GCNGC | 8 cut(s) | 617, 775, 961, 964, 967, 970, 1177, 1191 |
| BmcAI | AGTACT | 1 cut(s) | 467 |
| Bme1390I | CCNGG | 4 cut(s) | 993, 1034, 1089, 1109 |
| Bme18I | GGWCC | 2 cut(s) | 485, 1285 |
| BmgT120I | GGNCC | 2 cut(s) | 485, 1285 |
| BmiI | GGNNCC | 5 cut(s) | 224, 294, 604, 978, 1160 |
| BmrFI | CCNGG | 4 cut(s) | 993, 1034, 1089, 1109 |
| BmsI | GCATC | 4 cut(s) | 644, 666, 709, 1176 |
| BpiI | GAAGAC | 2 cut(s) | 249, 1268 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 112, 144 |
| BpmI | CTGGAG | 2 cut(s) | 219, 284 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1005 |
| Bpu14I | TTCGAA | 1 cut(s) | 252 |
| BpuEI | CTTGAG | 2 cut(s) | 336, 378 |
| BpuMI | CCSGG | 4 cut(s) | 993, 1034, 1089, 1109 |
| BsaBI | GATNNNNATC | 1 cut(s) | 751 |
| BsaI | GGTCTC | 1 cut(s) | 298 |
| BsaJI | CCNNGG | 3 cut(s) | 10, 288, 991 |
| BsaWI | WCCGGW | 2 cut(s) | 1054, 1134 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 251, 254, 281, 284 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 801, 1108 |
| Bse118I | RCCGGY | 2 cut(s) | 1134, 1219 |
| Bse1I | ACTGG | 1 cut(s) | 336 |
| Bse21I | CCTNAGG | 1 cut(s) | 369 |
| Bse3DI | GCAATG | 1 cut(s) | 493 |
| Bse8I | GATNNNNATC | 1 cut(s) | 751 |
| BseDI | CCNNGG | 3 cut(s) | 10, 288, 991 |
| BseGI | GGATG | 1 cut(s) | 948 |
| BseJI | GATNNNNATC | 1 cut(s) | 751 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 801, 1108 |
| BseMI | GCAATG | 1 cut(s) | 493 |
| BseMII | CTCAG | 3 cut(s) | 327, 1019, 1196 |
| BseNI | ACTGG | 1 cut(s) | 336 |
| BseRI | GAGGAG | 9 cut(s) | 41, 259, 339, 378, 381, 396, 595, 817, 820 |
| BseXI | GCAGC | 3 cut(s) | 627, 785, 1201 |
| Bsh1236I | CGCG | 1 cut(s) | 1178 |
| Bsh1285I | CGRYCG | 3 cut(s) | 480, 670, 1135 |
| BshFI | GGCC | 3 cut(s) | 67, 374, 1175 |
| BshTI | ACCGGT | 1 cut(s) | 1134 |
| BsiEI | CGRYCG | 3 cut(s) | 480, 670, 1135 |
| BsiSI | CCGG | 7 cut(s) | 993, 1034, 1055, 1089, 1109, 1135, 1220 |
| BslFI | GGGAC | 1 cut(s) | 1239 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 801, 1108 |
| BsmAI | GTCTC | 4 cut(s) | 220, 298, 311, 535 |
| BsmBI | CGTCTC | 1 cut(s) | 311 |
| BsmFI | GGGAC | 1 cut(s) | 1239 |
| BsnI | GGCC | 3 cut(s) | 67, 374, 1175 |
| Bso31I | GGTCTC | 1 cut(s) | 298 |
| Bsp119I | TTCGAA | 1 cut(s) | 252 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1034 |
| Bsp19I | CCATGG | 1 cut(s) | 288 |
| BspACI | CCGC | 7 cut(s) | 498, 959, 962, 965, 968, 1176, 1223 |
| BspANI | GGCC | 3 cut(s) | 67, 374, 1175 |
| BspCNI | CTCAG | 3 cut(s) | 326, 1018, 1195 |
| BspFNI | CGCG | 1 cut(s) | 1178 |
| BspHI | TCATGA | 2 cut(s) | 166, 541 |
| BspLI | GGNNCC | 5 cut(s) | 224, 294, 604, 978, 1160 |
| BspMAI | CTGCAG | 2 cut(s) | 120, 863 |
| BspPI | GGATC | 8 cut(s) | 177, 217, 230, 287, 300, 760, 824, 1071 |
| BspT104I | TTCGAA | 1 cut(s) | 252 |
| BspTNI | GGTCTC | 1 cut(s) | 298 |
| BsrDI | GCAATG | 1 cut(s) | 493 |
| BsrFI | RCCGGY | 2 cut(s) | 1134, 1219 |
| BsrI | ACTGG | 1 cut(s) | 336 |
| BssAI | RCCGGY | 2 cut(s) | 1134, 1219 |
| BssECI | CCNNGG | 3 cut(s) | 10, 288, 991 |
| BssT1I | CCWWGG | 2 cut(s) | 10, 288 |
| Bst4CI | ACNGT | 8 cut(s) | 214, 322, 465, 481, 671, 1041, 1245, 1274 |
| BstBI | TTCGAA | 1 cut(s) | 252 |
| BstC8I | GCNNGC | 1 cut(s) | 1173 |
| BstDEI | CTNAG | 6 cut(s) | 179, 313, 330, 369, 1005, 1182 |
| BstDSI | CCRYGG | 1 cut(s) | 288 |
| BstF5I | GGATG | 1 cut(s) | 948 |
| BstFNI | CGCG | 1 cut(s) | 1178 |
| BstMAI | GTCTC | 4 cut(s) | 220, 298, 311, 535 |
| BstMCI | CGRYCG | 3 cut(s) | 480, 670, 1135 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 621, 965, 968, 974 |
| BstNSI | RCATGY | 1 cut(s) | 1171 |
| BstSCI | CCNGG | 4 cut(s) | 991, 1032, 1087, 1107 |
| BstSFI | CTRYAG | 2 cut(s) | 116, 859 |
| BstUI | CGCG | 1 cut(s) | 1178 |
| BstV1I | GCAGC | 3 cut(s) | 627, 785, 1201 |
| BstV2I | GAAGAC | 2 cut(s) | 249, 1268 |
| BstX2I | RGATCY | 4 cut(s) | 56, 182, 222, 292 |
| BstYI | RGATCY | 4 cut(s) | 56, 182, 222, 292 |
| Bsu36I | CCTNAGG | 1 cut(s) | 369 |
| BsuRI | GGCC | 3 cut(s) | 67, 374, 1175 |
| BtgI | CCRYGG | 1 cut(s) | 288 |
| BtsCI | GGATG | 1 cut(s) | 948 |
| BtsI | GCAGTG | 1 cut(s) | 856 |
| BtsIMutI | CAGTG | 2 cut(s) | 693, 856 |
| Cac8I | GCNNGC | 1 cut(s) | 1173 |
| CciI | TCATGA | 2 cut(s) | 166, 541 |
| Cfr10I | RCCGGY | 2 cut(s) | 1134, 1219 |
| Cfr13I | GGNCC | 2 cut(s) | 485, 1285 |
| Csp6I | GTAC | 3 cut(s) | 466, 1037, 1112 |
| CspAI | ACCGGT | 1 cut(s) | 1134 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 920, 955 |
| CviAII | CATG | 6 cut(s) | 167, 289, 358, 400, 542, 1168 |
| CviQI | GTAC | 3 cut(s) | 466, 1037, 1112 |
| DdeI | CTNAG | 6 cut(s) | 179, 313, 330, 369, 1005, 1182 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1233 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1233 |
| Eco130I | CCWWGG | 2 cut(s) | 10, 288 |
| Eco147I | AGGCCT | 1 cut(s) | 374 |
| Eco24I | GRGCYC | 1 cut(s) | 1034 |
| Eco31I | GGTCTC | 1 cut(s) | 298 |
| Eco32I | GATATC | 1 cut(s) | 631 |
| Eco47I | GGWCC | 2 cut(s) | 485, 1285 |
| Eco57I | CTGAAG | 2 cut(s) | 798, 902 |
| Eco81I | CCTNAGG | 1 cut(s) | 369 |
| EcoRV | GATATC | 1 cut(s) | 631 |
| EcoT14I | CCWWGG | 2 cut(s) | 10, 288 |
| EcoT22I | ATGCAT | 1 cut(s) | 659 |
| EcoT38I | GRGCYC | 1 cut(s) | 1034 |
| ErhI | CCWWGG | 2 cut(s) | 10, 288 |
| Esp3I | CGTCTC | 1 cut(s) | 311 |
| FaeI | CATG | 6 cut(s) | 170, 292, 361, 403, 545, 1171 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 555, 587 |
| FaqI | GGGAC | 1 cut(s) | 1239 |
| FatI | CATG | 6 cut(s) | 166, 288, 357, 399, 541, 1167 |
| FauI | CCCGC | 1 cut(s) | 1216 |
| Fnu4HI | GCNGC | 8 cut(s) | 616, 774, 960, 963, 966, 969, 1176, 1190 |
| FokI | GGATG | 1 cut(s) | 955 |
| FriOI | GRGCYC | 1 cut(s) | 1034 |
| Fsp4HI | GCNGC | 8 cut(s) | 616, 774, 960, 963, 966, 969, 1176, 1190 |
| FspBI | CTAG | 5 cut(s) | 80, 489, 645, 1143, 1291 |
| GluI | GCNGC | 8 cut(s) | 616, 774, 960, 963, 966, 969, 1176, 1190 |
| GsuI | CTGGAG | 2 cut(s) | 219, 284 |
| HaeIII | GGCC | 3 cut(s) | 67, 374, 1175 |
| HapII | CCGG | 7 cut(s) | 993, 1034, 1055, 1089, 1109, 1135, 1220 |
| Hin1II | CATG | 6 cut(s) | 170, 292, 361, 403, 545, 1171 |
| HincII | GTYRAC | 2 cut(s) | 423, 1238 |
| HindII | GTYRAC | 2 cut(s) | 423, 1238 |
| HindIII | AAGCTT | 2 cut(s) | 569, 876 |
| HinfI | GANTC | 4 cut(s) | 538, 701, 766, 1180 |
| HpaI | GTTAAC | 1 cut(s) | 423 |
| HpaII | CCGG | 7 cut(s) | 993, 1034, 1055, 1089, 1109, 1135, 1220 |
| HphI | GGTGA | 1 cut(s) | 1209 |
| Hpy166II | GTNNAC | 4 cut(s) | 45, 423, 1217, 1238 |
| Hpy188I | TCNGA | 9 cut(s) | 316, 579, 718, 796, 981, 1023, 1080, 1132, 1185 |
| Hpy8I | GTNNAC | 4 cut(s) | 45, 423, 1217, 1238 |
| Hpy99I | CGWCG | 4 cut(s) | 263, 1249, 1261, 1274 |
| HpyAV | CCTTC | 2 cut(s) | 756, 826 |
| HpyCH4III | ACNGT | 8 cut(s) | 214, 322, 465, 481, 671, 1041, 1245, 1274 |
| HpyCH4IV | ACGT | 2 cut(s) | 682, 1018 |
| HpyCH4V | TGCA | 9 cut(s) | 118, 615, 657, 722, 841, 861, 1073, 1171, 1189 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 621, 965, 968, 974 |
| HpyF3I | CTNAG | 6 cut(s) | 179, 313, 330, 369, 1005, 1182 |
| HpySE526I | ACGT | 2 cut(s) | 682, 1018 |
| Hsp92II | CATG | 6 cut(s) | 170, 292, 361, 403, 545, 1171 |
| KspAI | GTTAAC | 1 cut(s) | 423 |
| LmnI | GCTCC | 2 cut(s) | 608, 982 |
| Lsp1109I | GCAGC | 3 cut(s) | 627, 785, 1201 |
| LweI | GCATC | 4 cut(s) | 644, 666, 709, 1176 |
| MaeI | CTAG | 5 cut(s) | 80, 489, 645, 1143, 1291 |
| MaeII | ACGT | 2 cut(s) | 682, 1018 |
| MaeIII | GTNAC | 4 cut(s) | 472, 728, 921, 1041 |
| MboII | GAAGA | 8 cut(s) | 66, 182, 212, 254, 271, 575, 663, 1273 |
| MflI | RGATCY | 4 cut(s) | 56, 182, 222, 292 |
| MhlI | GDGCHC | 1 cut(s) | 1034 |
| MluCI | AATT | 4 cut(s) | 31, 413, 427, 1074 |
| MlyI | GAGTC | 3 cut(s) | 547, 775, 1174 |
| MmeI | TCCRAC | 2 cut(s) | 463, 1155 |
| Mph1103I | ATGCAT | 1 cut(s) | 659 |
| MseI | TTAA | 4 cut(s) | 324, 363, 422, 573 |
| MspA1I | CMGCKG | 1 cut(s) | 776 |
| MspI | CCGG | 7 cut(s) | 993, 1034, 1055, 1089, 1109, 1135, 1220 |
| MspR9I | CCNGG | 4 cut(s) | 993, 1034, 1089, 1109 |
| MvnI | CGCG | 1 cut(s) | 1178 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 621, 965, 968, 974 |
| NciI | CCSGG | 4 cut(s) | 993, 1034, 1089, 1109 |
| NcoI | CCATGG | 1 cut(s) | 288 |
| NlaIII | CATG | 6 cut(s) | 170, 292, 361, 403, 545, 1171 |
| NlaIV | GGNNCC | 5 cut(s) | 224, 294, 604, 978, 1160 |
| NsiI | ATGCAT | 1 cut(s) | 659 |
| NspI | RCATGY | 1 cut(s) | 1171 |
| NspV | TTCGAA | 1 cut(s) | 252 |
| PagI | TCATGA | 2 cut(s) | 166, 541 |
| PceI | AGGCCT | 1 cut(s) | 374 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 258, 1253 |
| PfeI | GAWTC | 1 cut(s) | 701 |
| PinAI | ACCGGT | 1 cut(s) | 1134 |
| PkrI | GCNGC | 8 cut(s) | 617, 775, 961, 964, 967, 970, 1177, 1191 |
| PleI | GAGTC | 3 cut(s) | 546, 774, 1174 |
| PpsI | GAGTC | 3 cut(s) | 546, 774, 1174 |
| PspN4I | GGNNCC | 5 cut(s) | 224, 294, 604, 978, 1160 |
| PspPI | GGNCC | 2 cut(s) | 485, 1285 |
| PstI | CTGCAG | 2 cut(s) | 120, 863 |
| PsuI | RGATCY | 4 cut(s) | 56, 182, 222, 292 |
| PvuII | CAGCTG | 1 cut(s) | 776 |
| RsaI | GTAC | 3 cut(s) | 467, 1038, 1113 |
| RsaNI | GTAC | 3 cut(s) | 466, 1037, 1112 |
| SaqAI | TTAA | 4 cut(s) | 324, 363, 422, 573 |
| SatI | GCNGC | 8 cut(s) | 616, 774, 960, 963, 966, 969, 1176, 1190 |
| Sau96I | GGNCC | 2 cut(s) | 485, 1285 |
| ScaI | AGTACT | 1 cut(s) | 467 |
| SchI | GAGTC | 3 cut(s) | 547, 775, 1174 |
| ScrFI | CCNGG | 4 cut(s) | 993, 1034, 1089, 1109 |
| SduI | GDGCHC | 1 cut(s) | 1034 |
| SfaNI | GCATC | 4 cut(s) | 644, 666, 709, 1176 |
| SfcI | CTRYAG | 2 cut(s) | 116, 859 |
| SfuI | TTCGAA | 1 cut(s) | 252 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1219 |
| SinI | GGWCC | 2 cut(s) | 485, 1285 |
| SmlI | CTYRAG | 2 cut(s) | 351, 393 |
| SmoI | CTYRAG | 2 cut(s) | 351, 393 |
| SpeI | ACTAGT | 1 cut(s) | 79 |
| Sse9I | AATT | 4 cut(s) | 31, 413, 427, 1074 |
| SseBI | AGGCCT | 1 cut(s) | 374 |
| SsiI | CCGC | 7 cut(s) | 498, 959, 962, 965, 968, 1176, 1223 |
| SspMI | CTAG | 5 cut(s) | 80, 489, 645, 1143, 1291 |
| StuI | AGGCCT | 1 cut(s) | 374 |
| StyD4I | CCNGG | 4 cut(s) | 991, 1032, 1087, 1107 |
| StyI | CCWWGG | 2 cut(s) | 10, 288 |
| TaaI | ACNGT | 8 cut(s) | 214, 322, 465, 481, 671, 1041, 1245, 1274 |
| TaiI | ACGT | 2 cut(s) | 685, 1021 |
| TaqI | TCGA | 7 cut(s) | 252, 525, 547, 737, 769, 881, 1048 |
| TasI | AATT | 4 cut(s) | 31, 413, 427, 1074 |
| TatI | WGTACW | 1 cut(s) | 465 |
| TauI | GCSGC | 5 cut(s) | 962, 965, 968, 971, 1178 |
| TfiI | GAWTC | 1 cut(s) | 701 |
| Tru1I | TTAA | 4 cut(s) | 324, 363, 422, 573 |
| Tru9I | TTAA | 4 cut(s) | 324, 363, 422, 573 |
| TscAI | CASTG | 2 cut(s) | 700, 863 |
| TseI | GCWGC | 3 cut(s) | 615, 773, 1189 |
| TspDTI | ATGAA | 7 cut(s) | 90, 183, 255, 420, 773, 845, 1003 |
| TspRI | CASTG | 2 cut(s) | 700, 863 |
| VpaK11BI | GGWCC | 2 cut(s) | 485, 1285 |
| XapI | RAATTY | 2 cut(s) | 413, 427 |
| XceI | RCATGY | 1 cut(s) | 1171 |
| XspI | CTAG | 5 cut(s) | 80, 489, 645, 1143, 1291 |
| ZrmI | AGTACT | 1 cut(s) | 467 |
| Zsp2I | ATGCAT | 1 cut(s) | 659 |