AT2G43010

Transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
17886101 .. 17889087
2987 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G43010.3

Sequence Viewer

Length: 1293 bp
ATGGAACACCAAGGTTGGAGTTTTGAGGAGAATTATAGTTTGTCCACTAATAGAAGATCTATCAGGCCACAAGATGAACTAGTGGAGTTATTATGGCGAGATGGACAAGTGGTTCTGCAGAGCCAAACTCATAGAGAACAAACCCAAACCCAGAAACAAGATCATCATGAAGAAGCCCTAAGATCCAGCACCTTTCTTGAAGATCAAGAAACTGTCTCTTGGATCCAATACCCTCCAGATGAAGACCCATTCGAACCCGACGACTTCTCCTCCCACTTCTTCTCAACCATGGATCCCCTCCAGAGACCAACCTCAGAGACGGTTAAGCCTAAGTCCAGTCCTGAACCTCCTCAAGTCATGGTTAAGCCTAAGGCCTGTCCTGACCCTCCTCCTCAAGTCATGCCTCCTCCAAAATTTAGGTTAACAAATTCATCATCGGGGATTAGGGAAACAGAAATGGAACAGTACTCGGTAACGACCGTTGGACCTAGCCATTGCGGAAGCAACCCATCACAGAACGATCTCGATGTCTCAATGAGTCATGATCGAAGCAAAAACATAGAAGAAAAGCTTAATCCGAACGCAAGTTCCTCATCAGGTGGCTCCTCTGGTTGCAGCTTTGGCAAAGATATCAAAGAAATGGCTAGTGGAAGATGCATCACAACCGACCGTAAGAGAAAACGTATAAATCACACTGACGAATCTGTATCTCTATCAGATGCAATCGGTAACAAGTCGAACCAACGATCAGGATCAAACCGAAGGAGTCGAGCAGCTGAAGTTCATAATCTCTCCGAAAGGAGGAGGAGAGATAGGATCAATGAGAGAATGAAGGCTTTGCAAGAACTAATACCTCACTGCAGTAAAACTGATAAAGCTTCGATTTTAGACGAAGCCATAGATTATTTGAAATCACTTCAGTTACAGCTTCAAGTGATGTGGATGGGGAGTGGAATGGCGGCGGCGGCGGCTTCGGCTCCGATGATGTTCCCCGGAGTTCAACCTCAGCAGTTCATACGTCAGATACAGAGCCCGGTACAGTTACCTCGATTTCCGGTTATGGATCAGTCTGCAATTCAGAACAATCCCGGTTTAGTTTGCCAAAACCCGGTACAAAACCAGATCATCTCCGACCGGTTTGCTAGATACATCGGTGGGTTCCCACACATGCAGGCCGCGACTCAGATGCAGCCGATGGAGATGTTGAGATTTAGTTCACCGGCGGGACAGCAAAGTCAACAACCGTCGTCTGTGCCGACGAAGACCACCGACGGTTCTCGTTTGGACCACTAG

Protein Analysis

430

Amino Acids

48.36

Weight (kDa)

6.33

Isoelectric Point (pI)

68.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 267 - 314 4.6e-16 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 273 - 319 6.6e-09 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1233
AccII CGCG 1 cut(s) 1178
AciI CCGC 7 cut(s) 498, 959, 962, 965, 968, 1176, 1223
AclWI GGATC 8 cut(s) 177, 217, 230, 287, 300, 760, 824, 1071
AcsI RAATTY 2 cut(s) 413, 427
AcuI CTGAAG 2 cut(s) 798, 902
AfaI GTAC 3 cut(s) 467, 1038, 1113
AfiI CCNNNNNNNGG 2 cut(s) 801, 1108
AgeI ACCGGT 1 cut(s) 1134
AgsI TTSAA 4 cut(s) 200, 910, 932, 1001
AhlI ACTAGT 1 cut(s) 79
AloI GAACNNNNNNTCC 4 cut(s) 96, 128, 572, 604
AluBI AGCT 5 cut(s) 571, 618, 776, 878, 928
AluI AGCT 5 cut(s) 571, 618, 776, 878, 928
Alw26I GTCTC 4 cut(s) 220, 298, 311, 535
AlwI GGATC 8 cut(s) 177, 217, 230, 287, 300, 760, 824, 1071
AoxI GGCC 3 cut(s) 65, 372, 1173
ApeKI GCWGC 3 cut(s) 615, 773, 1189
ApoI RAATTY 2 cut(s) 413, 427
AsiGI ACCGGT 1 cut(s) 1134
AspS9I GGNCC 2 cut(s) 485, 1285
AsuC2I CCSGG 4 cut(s) 993, 1034, 1089, 1109
AsuHPI GGTGA 1 cut(s) 1209
AsuII TTCGAA 1 cut(s) 252
AvaII GGWCC 2 cut(s) 485, 1285
AxyI CCTNAGG 1 cut(s) 369
BaeI ACNNNNGTAYC 2 cut(s) 1138, 1171
BamHI GGATCC 2 cut(s) 222, 292
BanII GRGCYC 1 cut(s) 1034
BbsI GAAGAC 2 cut(s) 249, 1268
BbvCI CCTCAGC 1 cut(s) 1005
BbvI GCAGC 3 cut(s) 627, 785, 1201
BccI CCATC 4 cut(s) 95, 517, 937, 1189
BcgI CGANNNNNNTGC 4 cut(s) 1121, 1155, 1168, 1202
BcnI CCSGG 4 cut(s) 993, 1034, 1089, 1109
BcoDI GTCTC 4 cut(s) 220, 298, 311, 535
BcuI ACTAGT 1 cut(s) 79
BfaI CTAG 5 cut(s) 80, 489, 645, 1143, 1291
BfmI CTRYAG 2 cut(s) 116, 859
BglII AGATCT 1 cut(s) 56
BisI GCNGC 8 cut(s) 616, 774, 960, 963, 966, 969, 1176, 1190
BlsI GCNGC 8 cut(s) 617, 775, 961, 964, 967, 970, 1177, 1191
BmcAI AGTACT 1 cut(s) 467
Bme1390I CCNGG 4 cut(s) 993, 1034, 1089, 1109
Bme18I GGWCC 2 cut(s) 485, 1285
BmgT120I GGNCC 2 cut(s) 485, 1285
BmiI GGNNCC 5 cut(s) 224, 294, 604, 978, 1160
BmrFI CCNGG 4 cut(s) 993, 1034, 1089, 1109
BmsI GCATC 4 cut(s) 644, 666, 709, 1176
BpiI GAAGAC 2 cut(s) 249, 1268
BplI GAGNNNNNCTC 2 cut(s) 112, 144
BpmI CTGGAG 2 cut(s) 219, 284
Bpu10I CCTNAGC 1 cut(s) 1005
Bpu14I TTCGAA 1 cut(s) 252
BpuEI CTTGAG 2 cut(s) 336, 378
BpuMI CCSGG 4 cut(s) 993, 1034, 1089, 1109
BsaBI GATNNNNATC 1 cut(s) 751
BsaI GGTCTC 1 cut(s) 298
BsaJI CCNNGG 3 cut(s) 10, 288, 991
BsaWI WCCGGW 2 cut(s) 1054, 1134
BsaXI ACNNNNNCTCC 4 cut(s) 251, 254, 281, 284
Bsc4I CCNNNNNNNGG 2 cut(s) 801, 1108
Bse118I RCCGGY 2 cut(s) 1134, 1219
Bse1I ACTGG 1 cut(s) 336
Bse21I CCTNAGG 1 cut(s) 369
Bse3DI GCAATG 1 cut(s) 493
Bse8I GATNNNNATC 1 cut(s) 751
BseDI CCNNGG 3 cut(s) 10, 288, 991
BseGI GGATG 1 cut(s) 948
BseJI GATNNNNATC 1 cut(s) 751
BseLI CCNNNNNNNGG 2 cut(s) 801, 1108
BseMI GCAATG 1 cut(s) 493
BseMII CTCAG 3 cut(s) 327, 1019, 1196
BseNI ACTGG 1 cut(s) 336
BseRI GAGGAG 9 cut(s) 41, 259, 339, 378, 381, 396, 595, 817, 820
BseXI GCAGC 3 cut(s) 627, 785, 1201
Bsh1236I CGCG 1 cut(s) 1178
Bsh1285I CGRYCG 3 cut(s) 480, 670, 1135
BshFI GGCC 3 cut(s) 67, 374, 1175
BshTI ACCGGT 1 cut(s) 1134
BsiEI CGRYCG 3 cut(s) 480, 670, 1135
BsiSI CCGG 7 cut(s) 993, 1034, 1055, 1089, 1109, 1135, 1220
BslFI GGGAC 1 cut(s) 1239
BslI CCNNNNNNNGG 2 cut(s) 801, 1108
BsmAI GTCTC 4 cut(s) 220, 298, 311, 535
BsmBI CGTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 1239
BsnI GGCC 3 cut(s) 67, 374, 1175
Bso31I GGTCTC 1 cut(s) 298
Bsp119I TTCGAA 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 1034
Bsp19I CCATGG 1 cut(s) 288
BspACI CCGC 7 cut(s) 498, 959, 962, 965, 968, 1176, 1223
BspANI GGCC 3 cut(s) 67, 374, 1175
BspCNI CTCAG 3 cut(s) 326, 1018, 1195
BspFNI CGCG 1 cut(s) 1178
BspHI TCATGA 2 cut(s) 166, 541
BspLI GGNNCC 5 cut(s) 224, 294, 604, 978, 1160
BspMAI CTGCAG 2 cut(s) 120, 863
BspPI GGATC 8 cut(s) 177, 217, 230, 287, 300, 760, 824, 1071
BspT104I TTCGAA 1 cut(s) 252
BspTNI GGTCTC 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 493
BsrFI RCCGGY 2 cut(s) 1134, 1219
BsrI ACTGG 1 cut(s) 336
BssAI RCCGGY 2 cut(s) 1134, 1219
BssECI CCNNGG 3 cut(s) 10, 288, 991
BssT1I CCWWGG 2 cut(s) 10, 288
Bst4CI ACNGT 8 cut(s) 214, 322, 465, 481, 671, 1041, 1245, 1274
BstBI TTCGAA 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 1173
BstDEI CTNAG 6 cut(s) 179, 313, 330, 369, 1005, 1182
BstDSI CCRYGG 1 cut(s) 288
BstF5I GGATG 1 cut(s) 948
BstFNI CGCG 1 cut(s) 1178
BstMAI GTCTC 4 cut(s) 220, 298, 311, 535
BstMCI CGRYCG 3 cut(s) 480, 670, 1135
BstMWI GCNNNNNNNGC 4 cut(s) 621, 965, 968, 974
BstNSI RCATGY 1 cut(s) 1171
BstSCI CCNGG 4 cut(s) 991, 1032, 1087, 1107
BstSFI CTRYAG 2 cut(s) 116, 859
BstUI CGCG 1 cut(s) 1178
BstV1I GCAGC 3 cut(s) 627, 785, 1201
BstV2I GAAGAC 2 cut(s) 249, 1268
BstX2I RGATCY 4 cut(s) 56, 182, 222, 292
BstYI RGATCY 4 cut(s) 56, 182, 222, 292
Bsu36I CCTNAGG 1 cut(s) 369
BsuRI GGCC 3 cut(s) 67, 374, 1175
BtgI CCRYGG 1 cut(s) 288
BtsCI GGATG 1 cut(s) 948
BtsI GCAGTG 1 cut(s) 856
BtsIMutI CAGTG 2 cut(s) 693, 856
Cac8I GCNNGC 1 cut(s) 1173
CciI TCATGA 2 cut(s) 166, 541
Cfr10I RCCGGY 2 cut(s) 1134, 1219
Cfr13I GGNCC 2 cut(s) 485, 1285
Csp6I GTAC 3 cut(s) 466, 1037, 1112
CspAI ACCGGT 1 cut(s) 1134
CspCI CAANNNNNGTGG 2 cut(s) 920, 955
CviAII CATG 6 cut(s) 167, 289, 358, 400, 542, 1168
CviQI GTAC 3 cut(s) 466, 1037, 1112
DdeI CTNAG 6 cut(s) 179, 313, 330, 369, 1005, 1182
DrdI GACNNNNNNGTC 1 cut(s) 1233
DseDI GACNNNNNNGTC 1 cut(s) 1233
Eco130I CCWWGG 2 cut(s) 10, 288
Eco147I AGGCCT 1 cut(s) 374
Eco24I GRGCYC 1 cut(s) 1034
Eco31I GGTCTC 1 cut(s) 298
Eco32I GATATC 1 cut(s) 631
Eco47I GGWCC 2 cut(s) 485, 1285
Eco57I CTGAAG 2 cut(s) 798, 902
Eco81I CCTNAGG 1 cut(s) 369
EcoRV GATATC 1 cut(s) 631
EcoT14I CCWWGG 2 cut(s) 10, 288
EcoT22I ATGCAT 1 cut(s) 659
EcoT38I GRGCYC 1 cut(s) 1034
ErhI CCWWGG 2 cut(s) 10, 288
Esp3I CGTCTC 1 cut(s) 311
FaeI CATG 6 cut(s) 170, 292, 361, 403, 545, 1171
FalI AAGNNNNNCTT 2 cut(s) 555, 587
FaqI GGGAC 1 cut(s) 1239
FatI CATG 6 cut(s) 166, 288, 357, 399, 541, 1167
FauI CCCGC 1 cut(s) 1216
Fnu4HI GCNGC 8 cut(s) 616, 774, 960, 963, 966, 969, 1176, 1190
FokI GGATG 1 cut(s) 955
FriOI GRGCYC 1 cut(s) 1034
Fsp4HI GCNGC 8 cut(s) 616, 774, 960, 963, 966, 969, 1176, 1190
FspBI CTAG 5 cut(s) 80, 489, 645, 1143, 1291
GluI GCNGC 8 cut(s) 616, 774, 960, 963, 966, 969, 1176, 1190
GsuI CTGGAG 2 cut(s) 219, 284
HaeIII GGCC 3 cut(s) 67, 374, 1175
HapII CCGG 7 cut(s) 993, 1034, 1055, 1089, 1109, 1135, 1220
Hin1II CATG 6 cut(s) 170, 292, 361, 403, 545, 1171
HincII GTYRAC 2 cut(s) 423, 1238
HindII GTYRAC 2 cut(s) 423, 1238
HindIII AAGCTT 2 cut(s) 569, 876
HinfI GANTC 4 cut(s) 538, 701, 766, 1180
HpaI GTTAAC 1 cut(s) 423
HpaII CCGG 7 cut(s) 993, 1034, 1055, 1089, 1109, 1135, 1220
HphI GGTGA 1 cut(s) 1209
Hpy166II GTNNAC 4 cut(s) 45, 423, 1217, 1238
Hpy188I TCNGA 9 cut(s) 316, 579, 718, 796, 981, 1023, 1080, 1132, 1185
Hpy8I GTNNAC 4 cut(s) 45, 423, 1217, 1238
Hpy99I CGWCG 4 cut(s) 263, 1249, 1261, 1274
HpyAV CCTTC 2 cut(s) 756, 826
HpyCH4III ACNGT 8 cut(s) 214, 322, 465, 481, 671, 1041, 1245, 1274
HpyCH4IV ACGT 2 cut(s) 682, 1018
HpyCH4V TGCA 9 cut(s) 118, 615, 657, 722, 841, 861, 1073, 1171, 1189
HpyF10VI GCNNNNNNNGC 4 cut(s) 621, 965, 968, 974
HpyF3I CTNAG 6 cut(s) 179, 313, 330, 369, 1005, 1182
HpySE526I ACGT 2 cut(s) 682, 1018
Hsp92II CATG 6 cut(s) 170, 292, 361, 403, 545, 1171
KspAI GTTAAC 1 cut(s) 423
LmnI GCTCC 2 cut(s) 608, 982
Lsp1109I GCAGC 3 cut(s) 627, 785, 1201
LweI GCATC 4 cut(s) 644, 666, 709, 1176
MaeI CTAG 5 cut(s) 80, 489, 645, 1143, 1291
MaeII ACGT 2 cut(s) 682, 1018
MaeIII GTNAC 4 cut(s) 472, 728, 921, 1041
MboII GAAGA 8 cut(s) 66, 182, 212, 254, 271, 575, 663, 1273
MflI RGATCY 4 cut(s) 56, 182, 222, 292
MhlI GDGCHC 1 cut(s) 1034
MluCI AATT 4 cut(s) 31, 413, 427, 1074
MlyI GAGTC 3 cut(s) 547, 775, 1174
MmeI TCCRAC 2 cut(s) 463, 1155
Mph1103I ATGCAT 1 cut(s) 659
MseI TTAA 4 cut(s) 324, 363, 422, 573
MspA1I CMGCKG 1 cut(s) 776
MspI CCGG 7 cut(s) 993, 1034, 1055, 1089, 1109, 1135, 1220
MspR9I CCNGG 4 cut(s) 993, 1034, 1089, 1109
MvnI CGCG 1 cut(s) 1178
MwoI GCNNNNNNNGC 4 cut(s) 621, 965, 968, 974
NciI CCSGG 4 cut(s) 993, 1034, 1089, 1109
NcoI CCATGG 1 cut(s) 288
NlaIII CATG 6 cut(s) 170, 292, 361, 403, 545, 1171
NlaIV GGNNCC 5 cut(s) 224, 294, 604, 978, 1160
NsiI ATGCAT 1 cut(s) 659
NspI RCATGY 1 cut(s) 1171
NspV TTCGAA 1 cut(s) 252
PagI TCATGA 2 cut(s) 166, 541
PceI AGGCCT 1 cut(s) 374
PcsI WCGNNNNNNNCGW 2 cut(s) 258, 1253
PfeI GAWTC 1 cut(s) 701
PinAI ACCGGT 1 cut(s) 1134
PkrI GCNGC 8 cut(s) 617, 775, 961, 964, 967, 970, 1177, 1191
PleI GAGTC 3 cut(s) 546, 774, 1174
PpsI GAGTC 3 cut(s) 546, 774, 1174
PspN4I GGNNCC 5 cut(s) 224, 294, 604, 978, 1160
PspPI GGNCC 2 cut(s) 485, 1285
PstI CTGCAG 2 cut(s) 120, 863
PsuI RGATCY 4 cut(s) 56, 182, 222, 292
PvuII CAGCTG 1 cut(s) 776
RsaI GTAC 3 cut(s) 467, 1038, 1113
RsaNI GTAC 3 cut(s) 466, 1037, 1112
SaqAI TTAA 4 cut(s) 324, 363, 422, 573
SatI GCNGC 8 cut(s) 616, 774, 960, 963, 966, 969, 1176, 1190
Sau96I GGNCC 2 cut(s) 485, 1285
ScaI AGTACT 1 cut(s) 467
SchI GAGTC 3 cut(s) 547, 775, 1174
ScrFI CCNGG 4 cut(s) 993, 1034, 1089, 1109
SduI GDGCHC 1 cut(s) 1034
SfaNI GCATC 4 cut(s) 644, 666, 709, 1176
SfcI CTRYAG 2 cut(s) 116, 859
SfuI TTCGAA 1 cut(s) 252
SgrAI CRCCGGYG 1 cut(s) 1219
SinI GGWCC 2 cut(s) 485, 1285
SmlI CTYRAG 2 cut(s) 351, 393
SmoI CTYRAG 2 cut(s) 351, 393
SpeI ACTAGT 1 cut(s) 79
Sse9I AATT 4 cut(s) 31, 413, 427, 1074
SseBI AGGCCT 1 cut(s) 374
SsiI CCGC 7 cut(s) 498, 959, 962, 965, 968, 1176, 1223
SspMI CTAG 5 cut(s) 80, 489, 645, 1143, 1291
StuI AGGCCT 1 cut(s) 374
StyD4I CCNGG 4 cut(s) 991, 1032, 1087, 1107
StyI CCWWGG 2 cut(s) 10, 288
TaaI ACNGT 8 cut(s) 214, 322, 465, 481, 671, 1041, 1245, 1274
TaiI ACGT 2 cut(s) 685, 1021
TaqI TCGA 7 cut(s) 252, 525, 547, 737, 769, 881, 1048
TasI AATT 4 cut(s) 31, 413, 427, 1074
TatI WGTACW 1 cut(s) 465
TauI GCSGC 5 cut(s) 962, 965, 968, 971, 1178
TfiI GAWTC 1 cut(s) 701
Tru1I TTAA 4 cut(s) 324, 363, 422, 573
Tru9I TTAA 4 cut(s) 324, 363, 422, 573
TscAI CASTG 2 cut(s) 700, 863
TseI GCWGC 3 cut(s) 615, 773, 1189
TspDTI ATGAA 7 cut(s) 90, 183, 255, 420, 773, 845, 1003
TspRI CASTG 2 cut(s) 700, 863
VpaK11BI GGWCC 2 cut(s) 485, 1285
XapI RAATTY 2 cut(s) 413, 427
XceI RCATGY 1 cut(s) 1171
XspI CTAG 5 cut(s) 80, 489, 645, 1143, 1291
ZrmI AGTACT 1 cut(s) 467
Zsp2I ATGCAT 1 cut(s) 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.