Prupe.3G179800_v2.0.a1

transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
19574165 .. 19578706
4542 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G179800.1

Sequence Viewer

Length: 1659 bp
ATGAATTCTTGCATTCCTGACTGGAATTTTGAGGCTGATCTCCCTTTGACCAACCAAAAGAAACCCATGGGGCCAGACCATGAACTAGTAGAGCTCTTGTGGAGAAATGGACAGGTAGTTTTGCACAGCCAAACGCATCGAAAACCGTGTCCTAATCCTCCTAATGAGGCCAGACAAGTTCAAAAACAAGATCCGCAAACCATAAGGGTTGGTGGATTATATGGGAACTCAAGTAATTTGACTCAAGATGAAGACACAGGTTCCTTGATCCACTACCCTCTTGAAGATTCCTTTGACAAAGAGTTCTGTTCCCATTTTTTTTCTGAATTGCCTTCCTGTGATCCAATTGAGATTGACAAGCCAACCAAACAATTTGAAGAAGAAAAGTTTGCTAAGTTTGGTGCTTCTGATACCCCCCATCTTGTTTCCACTGCCCCCCAACCTAATGTTAAGTCCCCTGCTGGTATGGGATATCCTGCAAACCCAATGCCTCCTCCAAGATATCAATACAATAACTCAACTGAGCAAAACCAAAATCTAGTAGGCTTGGGGAAAGTAGTTAATTTTTCAACATTTGCTACCCCAGGTAAGGGTGATAGAGGATCTTCCAGAGGAAAAATAGGAGGGAAAGAGTCTGGCAATTTAACTCAGGCGGAGGTTAAAGAGTGTTCGGTAATGACCGTTGGTTCGAGTTACGTTGGTAGCAACCAAGTTCTAAATGACTTTGATGTGAGCAGGGCTTCAAGCAATTGTGATGGGACGACTGGTTTATCTGTTGGACCCTTCTATGACAATGTTCAAAAGATGATGCCTCAGAATGAGAGAGGGAAAACAGATACACTAGACCCAACTCTTACTTCGTCTTCTGGTGGTTCTGGTAGTAGTTTTGGCAGAGGAGGAAAGCGGTCTAATGTTGTCAATAGCAACAAAAGAAAGGGTAGAGATGCTGAGGAGTCAGAGTGCCAAAGTGAGGCTGCTGAACTTGAGTCAGCTGCAGGAAACAAGTCAGCACAACGGTCTGGATCATCCAGGAGGAGCCGTGCTGCTGAAGTCCATAATCTCTCAGAAAGGAGACGGAGAGATCGGATCAACGAGAAAATGAGAGCATTGCAAGAGCTCATACCTCATTCTAACAAGACAGATAAAGCATCAATGTTAGATGAGGCAATTGAATACTTGAAGTCTCTTCAGATGCAACTTCAGGTAATGTGGATGGGAAGCGGGATGGCACCAATGATGTTTCCAGGCATGCAGCACTATATGTCCCGAATGGGAATGGGAATGGGAATGGGAGTGGGAATGGGACCACCAGCCTTGCCTTCAATGCACAATCCGATGCATTTACCCAGAGTCCCTCTAGTTGATCAGTGCATTAATGTGGCTCCAGCAACAAACCAGGCTGTAATGTGCCAAGCACCGGTCTTGAATCCAGTTGATTATCATAACCAGATGCAAAATCCCGCTTTTCAGGAGCAGTATGCGCGTCTTATGGGCTTCCATCATATGCAGACTATGTCTCAGCCTATGAATATGTTCAGATTTGGCTCCCAGCCTATGCAACAGAATCAGATGACAGCACCAACTGGCATCAACAGTGGACCTTTAGGTGGAGGAGGTACAGCTAATGATACTTTAAGTGGCAAGATGTCCTTTTTCTGA

Protein Analysis

553

Amino Acids

60.5

Weight (kDa)

6.71

Isoelectric Point (pI)

55.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1228
AccII CGCG 1 cut(s) 1483
AciI CCGC 5 cut(s) 194, 653, 904, 1221, 1461
AclWI GGATC 6 cut(s) 185, 262, 335, 610, 1030, 1094
AcsI RAATTY 2 cut(s) 4, 25
AcuI CTGAAG 3 cut(s) 1068, 1172, 1184
AfaI GTAC 1 cut(s) 1618
AfiI CCNNNNNNNGG 5 cut(s) 589, 590, 970, 1417, 1607
AgeI ACCGGT 1 cut(s) 1417
AhlI ACTAGT 1 cut(s) 85
AjnI CCWGG 4 cut(s) 583, 1028, 1243, 1395
AjuI GAANNNNNNNTTGG 2 cut(s) 841, 873
AluBI AGCT 4 cut(s) 94, 992, 1117, 1622
AluI AGCT 4 cut(s) 94, 992, 1117, 1622
Alw21I GWGCWC 2 cut(s) 96, 1119
Alw26I GTCTC 3 cut(s) 1066, 1188, 1521
AlwI GGATC 6 cut(s) 185, 262, 335, 610, 1030, 1094
AoxI GGCC 2 cut(s) 71, 168
ApeKI GCWGC 4 cut(s) 974, 992, 1043, 1252
ApoI RAATTY 2 cut(s) 4, 25
ArsI GACNNNNNNTTYG 6 cut(s) 11, 43, 133, 165, 670, 702
AseI ATTAAT 1 cut(s) 1374
AsiGI ACCGGT 1 cut(s) 1417
Asp700I GAANNNNTTC 1 cut(s) 1532
AspLEI GCGC 1 cut(s) 1483
AspS9I GGNCC 4 cut(s) 71, 779, 1304, 1598
AsuHPI GGTGA 1 cut(s) 605
AvaII GGWCC 3 cut(s) 779, 1304, 1598
BanI GGYRCC 1 cut(s) 1228
BanII GRGCYC 2 cut(s) 96, 1119
BbsI GAAGAC 2 cut(s) 258, 855
Bbv12I GWGCWC 2 cut(s) 96, 1119
BbvCI CCTCAGC 1 cut(s) 948
BbvI GCAGC 4 cut(s) 961, 979, 1030, 1264
BccI CCATC 5 cut(s) 426, 749, 1207, 1219, 1506
BceAI ACGGC 1 cut(s) 1023
BciT130I CCWGG 4 cut(s) 585, 1030, 1245, 1397
BclI TGATCA 1 cut(s) 1363
BcoDI GTCTC 3 cut(s) 1066, 1188, 1521
BcuI ACTAGT 1 cut(s) 85
BfaI CTAG 4 cut(s) 86, 539, 842, 1358
BfmI CTRYAG 1 cut(s) 993
BisI GCNGC 4 cut(s) 975, 993, 1044, 1253
BlsI GCNGC 4 cut(s) 976, 994, 1045, 1254
Bme1390I CCNGG 4 cut(s) 585, 1030, 1245, 1397
Bme18I GGWCC 3 cut(s) 779, 1304, 1598
BmgT120I GGNCC 4 cut(s) 71, 779, 1304, 1598
BmiI GGNNCC 8 cut(s) 72, 262, 781, 1037, 1230, 1305, 1383, 1546
BmrFI CCNGG 4 cut(s) 585, 1030, 1245, 1397
BmsI GCATC 8 cut(s) 145, 798, 934, 1157, 1182, 1326, 1440, 1596
BpiI GAAGAC 2 cut(s) 258, 855
BpmI CTGGAG 1 cut(s) 1368
Bpu10I CCTNAGC 1 cut(s) 948
BpuEI CTTGAG 3 cut(s) 214, 228, 1004
BsaJI CCNNGG 2 cut(s) 66, 583
BsaWI WCCGGW 1 cut(s) 1417
BsaXI ACNNNNNCTCC 4 cut(s) 944, 974, 1024, 1054
Bsc4I CCNNNNNNNGG 5 cut(s) 589, 590, 970, 1417, 1607
Bse118I RCCGGY 1 cut(s) 1417
Bse1I ACTGG 4 cut(s) 26, 769, 1430, 1588
Bse3DI GCAATG 1 cut(s) 1106
BseBI CCWGG 4 cut(s) 585, 1030, 1245, 1397
BseDI CCNNGG 2 cut(s) 66, 583
BseGI GGATG 3 cut(s) 1025, 1218, 1230
BseLI CCNNNNNNNGG 5 cut(s) 589, 590, 970, 1417, 1607
BseMI GCAATG 1 cut(s) 1106
BseMII CTCAG 6 cut(s) 513, 662, 827, 939, 1077, 1532
BseNI ACTGG 4 cut(s) 26, 769, 1430, 1588
BseRI GAGGAG 5 cut(s) 483, 909, 965, 1048, 1626
BseXI GCAGC 4 cut(s) 961, 979, 1030, 1264
BseYI CCCAGC 1 cut(s) 1548
Bsh1236I CGCG 1 cut(s) 1483
BshFI GGCC 2 cut(s) 73, 170
BshNI GGYRCC 1 cut(s) 1228
BshTI ACCGGT 1 cut(s) 1417
BsiHKAI GWGCWC 2 cut(s) 96, 1119
BsiSI CCGG 1 cut(s) 1418
BslFI GGGAC 5 cut(s) 439, 772, 1249, 1317, 1337
BslI CCNNNNNNNGG 5 cut(s) 589, 590, 970, 1417, 1607
BsmAI GTCTC 3 cut(s) 1066, 1188, 1521
BsmBI CGTCTC 1 cut(s) 1066
BsmFI GGGAC 5 cut(s) 439, 772, 1249, 1317, 1337
BsmI GAATGC 1 cut(s) 12
BsnI GGCC 2 cut(s) 73, 170
Bsp1286I GDGCHC 2 cut(s) 96, 1119
Bsp143I GATC 9 cut(s) 37, 190, 267, 340, 602, 1022, 1081, 1086, 1363
Bsp19I CCATGG 1 cut(s) 66
BspACI CCGC 5 cut(s) 194, 653, 904, 1221, 1461
BspANI GGCC 2 cut(s) 73, 170
BspCNI CTCAG 6 cut(s) 514, 661, 826, 940, 1076, 1531
BspFNI CGCG 1 cut(s) 1483
BspLI GGNNCC 8 cut(s) 72, 262, 781, 1037, 1230, 1305, 1383, 1546
BspMAI CTGCAG 1 cut(s) 997
BspPI GGATC 6 cut(s) 185, 262, 335, 610, 1030, 1094
BspT107I GGYRCC 1 cut(s) 1228
BsrDI GCAATG 1 cut(s) 1106
BsrFI RCCGGY 1 cut(s) 1417
BsrI ACTGG 4 cut(s) 26, 769, 1430, 1588
BssAI RCCGGY 1 cut(s) 1417
BssECI CCNNGG 2 cut(s) 66, 583
BssMI GATC 9 cut(s) 37, 190, 267, 340, 602, 1022, 1081, 1086, 1363
BssT1I CCWWGG 1 cut(s) 66
Bst2UI CCWGG 4 cut(s) 585, 1030, 1245, 1397
Bst4CI ACNGT 4 cut(s) 147, 682, 1017, 1595
Bst6I CTCTTC 1 cut(s) 1191
BstC8I GCNNGC 1 cut(s) 1250
BstDEI CTNAG 7 cut(s) 393, 522, 648, 813, 948, 1063, 1518
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 3 cut(s) 1025, 1218, 1230
BstFNI CGCG 1 cut(s) 1483
BstHHI GCGC 1 cut(s) 1483
BstKTI GATC 9 cut(s) 40, 193, 270, 343, 605, 1025, 1084, 1089, 1366
BstMAI GTCTC 3 cut(s) 1066, 1188, 1521
BstMBI GATC 9 cut(s) 37, 190, 267, 340, 602, 1022, 1081, 1086, 1363
BstMWI GCNNNNNNNGC 2 cut(s) 1324, 1480
BstNI CCWGG 4 cut(s) 585, 1030, 1245, 1397
BstNSI RCATGY 1 cut(s) 1252
BstSCI CCNGG 4 cut(s) 583, 1028, 1243, 1395
BstSFI CTRYAG 1 cut(s) 993
BstUI CGCG 1 cut(s) 1483
BstV1I GCAGC 4 cut(s) 961, 979, 1030, 1264
BstV2I GAAGAC 2 cut(s) 258, 855
BstX2I RGATCY 2 cut(s) 190, 602
BstYI RGATCY 2 cut(s) 190, 602
BsuRI GGCC 2 cut(s) 73, 170
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 3 cut(s) 1025, 1218, 1230
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 3 cut(s) 429, 1373, 1600
Cac8I GCNNGC 1 cut(s) 1250
CfoI GCGC 1 cut(s) 1483
Cfr10I RCCGGY 1 cut(s) 1417
Cfr13I GGNCC 4 cut(s) 71, 779, 1304, 1598
CseI GACGC 1 cut(s) 1472
Csp6I GTAC 1 cut(s) 1617
CspAI ACCGGT 1 cut(s) 1417
CspCI CAANNNNNGTGG 2 cut(s) 1296, 1331
CviAII CATG 3 cut(s) 67, 80, 1249
CviQI GTAC 1 cut(s) 1617
DdeI CTNAG 7 cut(s) 393, 522, 648, 813, 948, 1063, 1518
DpnI GATC 9 cut(s) 39, 192, 269, 342, 604, 1024, 1083, 1088, 1365
DpnII GATC 9 cut(s) 37, 190, 267, 340, 602, 1022, 1081, 1086, 1363
Eam1104I CTCTTC 1 cut(s) 1191
EarI CTCTTC 1 cut(s) 1191
EciI GGCGGA 1 cut(s) 668
Ecl136II GAGCTC 2 cut(s) 94, 1117
Eco130I CCWWGG 1 cut(s) 66
Eco24I GRGCYC 2 cut(s) 96, 1119
Eco32I GATATC 2 cut(s) 473, 503
Eco47I GGWCC 3 cut(s) 779, 1304, 1598
Eco53kI GAGCTC 2 cut(s) 94, 1117
Eco57I CTGAAG 3 cut(s) 1068, 1172, 1184
EcoICRI GAGCTC 2 cut(s) 94, 1117
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 4 cut(s) 583, 1028, 1243, 1395
EcoRV GATATC 2 cut(s) 473, 503
EcoT14I CCWWGG 1 cut(s) 66
EcoT22I ATGCAT 1 cut(s) 1341
EcoT38I GRGCYC 2 cut(s) 96, 1119
ErhI CCWWGG 1 cut(s) 66
Esp3I CGTCTC 1 cut(s) 1066
FaeI CATG 3 cut(s) 70, 83, 1252
FalI AAGNNNNNCTT 1 cut(s) 1634
FaqI GGGAC 5 cut(s) 439, 772, 1249, 1317, 1337
FatI CATG 3 cut(s) 66, 79, 1248
FauI CCCGC 2 cut(s) 1214, 1468
FauNDI CATATG 1 cut(s) 1503
FbaI TGATCA 1 cut(s) 1363
Fnu4HI GCNGC 4 cut(s) 975, 993, 1044, 1253
FokI GGATG 3 cut(s) 1012, 1225, 1237
FriOI GRGCYC 2 cut(s) 96, 1119
Fsp4HI GCNGC 4 cut(s) 975, 993, 1044, 1253
FspBI CTAG 4 cut(s) 86, 539, 842, 1358
GlaI GCGC 1 cut(s) 1482
GluI GCNGC 4 cut(s) 975, 993, 1044, 1253
GsaI CCCAGC 1 cut(s) 1552
GsuI CTGGAG 1 cut(s) 1368
HaeIII GGCC 2 cut(s) 73, 170
HapII CCGG 1 cut(s) 1418
HgaI GACGC 1 cut(s) 1472
HhaI GCGC 1 cut(s) 1483
Hin1II CATG 3 cut(s) 70, 83, 1252
Hin6I GCGC 1 cut(s) 1481
HinP1I GCGC 1 cut(s) 1481
HinfI GANTC 8 cut(s) 241, 287, 632, 953, 986, 1350, 1426, 1564
HpaII CCGG 1 cut(s) 1418
HphI GGTGA 1 cut(s) 605
Hpy166II GTNNAC 1 cut(s) 1598
Hpy188III TCNNGA 8 cut(s) 17, 245, 281, 609, 1020, 1266, 1423, 1469
Hpy8I GTNNAC 1 cut(s) 1598
HpyAV CCTTC 3 cut(s) 342, 793, 1329
HpyCH4III ACNGT 4 cut(s) 147, 682, 1017, 1595
HpyCH4IV ACGT 1 cut(s) 696
HpyF10VI GCNNNNNNNGC 2 cut(s) 1324, 1480
HpyF3I CTNAG 7 cut(s) 393, 522, 648, 813, 948, 1063, 1518
HpySE526I ACGT 1 cut(s) 696
Hsp92II CATG 3 cut(s) 70, 83, 1252
HspAI GCGC 1 cut(s) 1481
Ksp22I TGATCA 1 cut(s) 1363
Kzo9I GATC 9 cut(s) 37, 190, 267, 340, 602, 1022, 1081, 1086, 1363
LmnI GCTCC 4 cut(s) 1035, 1387, 1471, 1550
Lsp1109I GCAGC 4 cut(s) 961, 979, 1030, 1264
LweI GCATC 8 cut(s) 145, 798, 934, 1157, 1182, 1326, 1440, 1596
MaeI CTAG 4 cut(s) 86, 539, 842, 1358
MaeII ACGT 1 cut(s) 696
MaeIII GTNAC 1 cut(s) 692
MalI GATC 9 cut(s) 39, 192, 269, 342, 604, 1024, 1083, 1088, 1365
MboI GATC 9 cut(s) 37, 190, 267, 340, 602, 1022, 1081, 1086, 1363
MboII GAAGA 7 cut(s) 263, 296, 389, 392, 597, 855, 1178
MfeI CAATTG 3 cut(s) 345, 748, 1167
MflI RGATCY 2 cut(s) 190, 602
MhlI GDGCHC 2 cut(s) 96, 1119
MlyI GAGTC 5 cut(s) 235, 641, 962, 995, 1359
MmeI TCCRAC 1 cut(s) 757
Mph1103I ATGCAT 1 cut(s) 1341
MroXI GAANNNNTTC 1 cut(s) 1532
MseI TTAA 6 cut(s) 450, 561, 644, 660, 1374, 1634
MslI CAYNNNNRTG 1 cut(s) 1376
MspA1I CMGCKG 1 cut(s) 992
MspI CCGG 1 cut(s) 1418
MspR9I CCNGG 4 cut(s) 585, 1030, 1245, 1397
MunI CAATTG 3 cut(s) 345, 748, 1167
Mva1269I GAATGC 1 cut(s) 12
MvaI CCWGG 4 cut(s) 585, 1030, 1245, 1397
MvnI CGCG 1 cut(s) 1483
MwoI GCNNNNNNNGC 2 cut(s) 1324, 1480
NcoI CCATGG 1 cut(s) 66
NdeI CATATG 1 cut(s) 1503
NdeII GATC 9 cut(s) 37, 190, 267, 340, 602, 1022, 1081, 1086, 1363
NlaIII CATG 3 cut(s) 70, 83, 1252
NlaIV GGNNCC 8 cut(s) 72, 262, 781, 1037, 1230, 1305, 1383, 1546
NsiI ATGCAT 1 cut(s) 1341
NspI RCATGY 1 cut(s) 1252
PaeI GCATGC 1 cut(s) 1252
PctI GAATGC 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 1532
PfeI GAWTC 3 cut(s) 287, 1426, 1564
PflFI GACNNNGTC 1 cut(s) 1513
PfoI TCCNGGA 1 cut(s) 1028
PinAI ACCGGT 1 cut(s) 1417
PkrI GCNGC 4 cut(s) 976, 994, 1045, 1254
PleI GAGTC 5 cut(s) 235, 640, 961, 994, 1358
PpsI GAGTC 5 cut(s) 235, 640, 961, 994, 1358
PshBI ATTAAT 1 cut(s) 1374
Psp124BI GAGCTC 2 cut(s) 96, 1119
Psp6I CCWGG 4 cut(s) 583, 1028, 1243, 1395
PspFI CCCAGC 1 cut(s) 1548
PspGI CCWGG 4 cut(s) 583, 1028, 1243, 1395
PspN4I GGNNCC 8 cut(s) 72, 262, 781, 1037, 1230, 1305, 1383, 1546
PspPI GGNCC 4 cut(s) 71, 779, 1304, 1598
PstI CTGCAG 1 cut(s) 997
PsuI RGATCY 2 cut(s) 190, 602
PsyI GACNNNGTC 1 cut(s) 1513
PvuII CAGCTG 1 cut(s) 992
RsaI GTAC 1 cut(s) 1618
RsaNI GTAC 1 cut(s) 1617
RseI CAYNNNNRTG 1 cut(s) 1376
SacI GAGCTC 2 cut(s) 96, 1119
SaqAI TTAA 6 cut(s) 450, 561, 644, 660, 1374, 1634
SatI GCNGC 4 cut(s) 975, 993, 1044, 1253
Sau3AI GATC 9 cut(s) 37, 190, 267, 340, 602, 1022, 1081, 1086, 1363
Sau96I GGNCC 4 cut(s) 71, 779, 1304, 1598
SchI GAGTC 5 cut(s) 235, 641, 962, 995, 1359
ScrFI CCNGG 4 cut(s) 585, 1030, 1245, 1397
SduI GDGCHC 2 cut(s) 96, 1119
SfaNI GCATC 8 cut(s) 145, 798, 934, 1157, 1182, 1326, 1440, 1596
SfcI CTRYAG 1 cut(s) 993
SinI GGWCC 3 cut(s) 779, 1304, 1598
SmiMI CAYNNNNRTG 1 cut(s) 1376
SmlI CTYRAG 3 cut(s) 229, 243, 983
SmoI CTYRAG 3 cut(s) 229, 243, 983
SpeI ACTAGT 1 cut(s) 85
SphI GCATGC 1 cut(s) 1252
SsiI CCGC 5 cut(s) 194, 653, 904, 1221, 1461
SspMI CTAG 4 cut(s) 86, 539, 842, 1358
SstI GAGCTC 2 cut(s) 96, 1119
StyD4I CCNGG 4 cut(s) 583, 1028, 1243, 1395
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 4 cut(s) 147, 682, 1017, 1595
TaiI ACGT 1 cut(s) 699
TaqI TCGA 2 cut(s) 139, 689
TfiI GAWTC 3 cut(s) 287, 1426, 1564
Tru1I TTAA 6 cut(s) 450, 561, 644, 660, 1374, 1634
Tru9I TTAA 6 cut(s) 450, 561, 644, 660, 1374, 1634
TscAI CASTG 3 cut(s) 436, 1373, 1600
TseI GCWGC 4 cut(s) 974, 992, 1043, 1252
TspDTI ATGAA 4 cut(s) 17, 96, 264, 1541
TspGWI ACGGA 1 cut(s) 1090
TspRI CASTG 3 cut(s) 436, 1373, 1600
Tth111I GACNNNGTC 1 cut(s) 1513
VpaK11BI GGWCC 3 cut(s) 779, 1304, 1598
VspI ATTAAT 1 cut(s) 1374
XapI RAATTY 2 cut(s) 4, 25
XceI RCATGY 1 cut(s) 1252
XmnI GAANNNNTTC 1 cut(s) 1532
XspI CTAG 4 cut(s) 86, 539, 842, 1358
Zsp2I ATGCAT 1 cut(s) 1341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.