Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001667

Physical Location & Seq

Genomic Coordinates Forward (+)

71277946 .. 71285931

Gene Structure 7986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG507300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2733 bp

ATGGCTATGCATGTTAGCAGTGCAGGGTTTTCTATTTTCAGTCACAGGAGAGTTAATAGAGTCAGAGCTGTTGCTTCTGAAAATGTGAGCATAGAGGAACAGAAGGTGAAGTTGGGGGCTTCTGATTTGAAGGTGACAAAGCTTGGGATTGGAGCTTGGTCTTGGGGTGACACCAGTTATTGGAATAACTTTGAATGGGACGATAGGAAGATGAAGGCTGCTAAGAATGCGTTTGATGCCAGCATTGATGGTGGCATAACCTTCTTTGATACTGCTGAAGTTTATGGCTCCAGGGCTTCTTTCGGTGCTATAAATTCTGAAACTTTACTCGGAAGATTTATCAAGGAAAGGAAAGAAAAGGATCCAGAAGTGGAGGTTGCTGTTGCAACCAAATTCGCAGCTTTGCCTTGGAGGCTGGGTCGGCAGAGCGTCCTCTCTGCCCTCAAGGATTCCCTCAGTCGCCTCGGTCTTTCTTCAGTAGAACTGTATCAACTCCACTGGCCAGGAGTATGGGGAAATGAAGGATACCTTGATGGTCTTGGAGATGCTGTTGAGCAAGGCCTTGTGAAGGCAGTTGGTGTCTCAAACTATAGAGAAAAGAGATTGCGTGATGCATACGAGAAACTCAAAAAGAGAGGTATCCCACTAGCATCAAACCAAGTGAATTACAGCCTCATATACAGGGCACCAGAGGAGAACGGAGTTAAGGCTACCTGTGACGAACTTGGGATCACTTTGATTGCCTATTCACCTATTGCTCAAGGTGTTCTTACAGGAAAGTATACTCCTGAAAATATTCCAACTGGCCCTCGAGGCCAGATTTACACTCGTGATTTTCTTACAAAGCTCCAACCTCTGCTTAACAGAATCAAGGAAATAGGAGAGAAGTACAGTAAAACACCTACACAGGTAGCCTTAAACTGGCTAATAACCCAGGACAATGTCGTGCCAATTCCAGGAGCCAAAAATGCAGAACAGGCTATGGAATTTGCGGGTGCGCTTGGATGGAAGCTCAACGATGATGAAGTAACTGAGTTGCGCTCTTTGGCTTCCGAGATTAAACCTCTCAAGAGAAGTCAGAGCTGTGCTTTGATCGGAACTTCTGTCTGTCCAGACATGAATTCTTGCATTCCTGATTGGAACTTTGAGGGTGATCTCCCTTTAACCAATCAAAAGAAACCCTTGGGGCCAGATCATGAACTGGTAGAGCTGTTATGGAGAAATGGGCAGGTAGTTTTGCACAGCCAAACAAATCGAAAACCAGGTCCTAATCCTAATGAGTCGAGGCAAGTTCAGAAACATGATCAAATAAGGGTTGGTGGGTTCTATGGGAACTCAGGTAATTTGATTCATGATGAGGACGCAGTCTCCATGATCCAATACCCTATAGAAGATTCCTTTGATAAAGAGTTTTCCCATTTCTTTTCTGAACTGCCTTCCTGTGATTCACTTGAGATTGAAAAGCCAATCAAACAATTTGGAGAAGAGAAGTTTGTTAAGTTTGATGCTCCTAGTACCACCCATCTTGTTTCCTCTTCACCCCAACCTAATGTGAAGTCCTCTACCGGTGTGGCATATCCTGAAAATCCAATGCCTCCTCCAAGATTTCAGATCAGTAATCCAACTGAGAAAAATCAAAATCTTGGAGGCTTGGGGAAAATAGTTAATTTTTCTCAATTTTCAACACTGGGAAAGGGTGTTGTAGGATCTTCCAGAAAACAATTAGGAGGGAAAGATCCTGGTAAGTTGAATCAAGCAGAAGTTAGAGAGTGTTCTATGATGACTGTTGGATCGAGTTACTCAGGTAGCAACCAAGTTCCTAATGACTTTGATGTGAGTCGGGCTTCAAGCAATGGTGATGGGACTACTGGTTTTTCTACTGGACCCTTGTACAACAATGTTCAAAAGATGATGCCTCTGAGTGAGGGAGGGATGACAGAAACCCTTGATCCAACTCTTACTTCATCTTCGGGTGGTTCTGGCAGTAGTTTTGGCAGAGGAGGGAAGCAGTCTAATGTTGTCAATAGCAACAAAAGAAAGGGTAGAGATGCAGAGGACTCAGAGTGCCAAAGTGAGGCAGCTGAAATTGAATCAGCTGCGGGAAACAAGCCAGCGCAACGATCAGGATCATCGAGGAGGACACGTGCTGCTGAAGTCCATAATCTCTCAGAAAGGAGACGAAGAGATCGGATCAATGAGAAAATGAAGGCACTGCAAGAGCTCATACCTCATTCTAACAAGACAGACAAAGCATCAATGTTAGATGAGGCAATTGAATACTTGAAGTCCCTTCAGCTGCAACTTCAGGTAATGTGGATGGGAGGTGGGATGGCACCGATGATGTTTCCAGGAGTACAGCACTATATGTCCCGAATGGGAATGGGAATGGGACCGCCTGCCATGCCTTCTATGCACAATCTAATGCAATTACCTCGGGTCCCTCTAGTTGATCAGTGCATGACTGTGACTCCACCAACAAACCAGGCAGTAATGTGCCAAACACCTGTTCTGAATCCTGTTGATTACCATAACCAGATGCAAAATCCCTCTATTCAGGAGCAATACGCACGTCTCATGGGATTCCATCATATGCAGACCATGTCTCAGCCTATGAATATGTTCAGATTCGGCTCTCAGCCTCTTCCGCAAAGTCAAATGATGGCACCAACTGGCATGAACACTGGACCTTTAAGTGGTGGAGCTGCAACTAATGATGCTTTGAGTGGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009642 GO:0009645 GO:0009692 GO:0009693 GO:0009704 GO:0009791 GO:0009889 GO:0009966 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0010244 GO:0010468 GO:0010556 GO:0010600 GO:0010646 GO:0010817 GO:0010928 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043449 GO:0043450 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0046885 GO:0048583 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0080090 GO:0090354 GO:0097159 GO:0104004 GO:0140110 GO:1900673 GO:1900674 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

HLH

Protein Analysis

910

Amino Acids

99.95

Weight (kDa)

7.92

Isoelectric Point (pI)

46.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	47 - 349	3.3e-56	Aldo/keto reductase family
HLH	PF00010	718 - 765	2.9e-14	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	724 - 770	3.9e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43010 AT2G43010 AT2G43010 AT2G43010 AT2G43010 AT3G59060 AT3G59060 AT3G59060 AT3G59060
fragaria_vesca	FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940
malus_domestica	MD09G1146000.v1.1 MD17G1132600.v1.1
prunus_persica	Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1
pyrus_communis	pycom09g06630 pycom17g12610
rosa_chinensis	RchiOBHm_Chr2g0152511
rosa_laevigata	RLG00000020642
rosa_multiflora	Rmu_sc0005366.1_g000001 Rmu_sc0027733.1_g000001 Rmu_sc0027737.1_g000001 Rmu_sc0034754.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095640
rosa_rugosa	Rorug02G0434000 Rorug02G0434100 Rorug02G0434200
rosa_samantha	Rh2AG495400 Rh2BG507300 Rh2CG481500 Rh2CG481600 Rh2DG518600
rosa_wichuraiana	Rw2G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	810
Acc36I	ACCTGC	1 cut(s)	1219
AccB1I	GGYRCC	3 cut(s)	685, 2332, 2662
AccB7I	CCANNNNNTGG	1 cut(s)	180
AccI	GTMKAC	1 cut(s)	782
AciI	CCGC	4 cut(s)	992, 2099, 2393, 2645
AcoI	YGGCCR	1 cut(s)	500
AcsI	RAATTY	4 cut(s)	313, 392, 986, 1120
AcuI	CTGAAG	5 cut(s)	297, 459, 2172, 2276, 2288
AcvI	CACGTG	1 cut(s)	2144
AfaI	GTAC	4 cut(s)	890, 1516, 1892, 2355
AfiI	CCNNNNNNNGG	6 cut(s)	180, 568, 921, 956, 2074, 2693
AflIII	ACRYGT	1 cut(s)	2141
AgeI	ACCGGT	1 cut(s)	1565
AjiI	CACGTC	1 cut(s)	2570
AjnI	CCWGG	8 cut(s)	290, 502, 933, 955, 1261, 1738, 2347, 2481
AjuI	GAANNNNNNNTTGG	6 cut(s)	95, 127, 1945, 1977, 2490, 2522
Alw21I	GWGCWC	1 cut(s)	2223
Alw26I	GTCTC	5 cut(s)	586, 1372, 2170, 2576, 2607
Ama87I	CYCGRG	2 cut(s)	810, 2433
AoxI	GGCC	5 cut(s)	500, 559, 805, 814, 1187
ApeKI	GCWGC	7 cut(s)	218, 398, 2078, 2096, 2147, 2296, 2702
ApoI	RAATTY	4 cut(s)	313, 392, 986, 1120
ArsI	GACNNNNNNTTYG	2 cut(s)	1249, 1281
AsiGI	ACCGGT	1 cut(s)	1565
Asp700I	GAANNNNTTC	2 cut(s)	795, 2618
AspLEI	GCGC	3 cut(s)	1000, 1041, 2116
AspS9I	GGNCC	7 cut(s)	806, 1187, 1265, 1883, 2390, 2437, 2684
AsuHPI	GGTGA	7 cut(s)	118, 145, 179, 741, 1163, 1530, 1868
AvaI	CYCGRG	2 cut(s)	810, 2433
AvaII	GGWCC	5 cut(s)	1265, 1883, 2390, 2437, 2684
BaeGI	GKGCMC	1 cut(s)	688
BalI	TGGCCA	1 cut(s)	502
BamHI	GGATCC	1 cut(s)	361
BanI	GGYRCC	3 cut(s)	685, 2332, 2662
BanII	GRGCYC	1 cut(s)	2223
BauI	CACGAG	1 cut(s)	828
BbrPI	CACGTG	1 cut(s)	2144
Bbv12I	GWGCWC	1 cut(s)	2223
BbvI	GCAGC	7 cut(s)	205, 410, 2083, 2090, 2134, 2283, 2689
BccI	CCATC	9 cut(s)	242, 527, 999, 1530, 1853, 2311, 2323, 2592, 2653
BcgI	CGANNNNNNTGC	2 cut(s)	2414, 2448
BciT130I	CCWGG	8 cut(s)	292, 504, 935, 957, 1263, 1740, 2349, 2483
BciVI	GTATCC	2 cut(s)	518, 650
BclI	TGATCA	2 cut(s)	1303, 2449
BcoDI	GTCTC	5 cut(s)	586, 1372, 2170, 2576, 2607
BfaI	CTAG	3 cut(s)	647, 1512, 2444
BfmI	CTRYAG	2 cut(s)	589, 1386
BfuAI	ACCTGC	1 cut(s)	1219
BfuI	GTATCC	2 cut(s)	518, 650
BglI	GCCNNNNNGGC	2 cut(s)	412, 813
BisI	GCNGC	7 cut(s)	219, 399, 2079, 2097, 2148, 2297, 2703
BlsI	GCNGC	7 cut(s)	220, 400, 2080, 2098, 2149, 2298, 2704
Bme1390I	CCNGG	8 cut(s)	292, 504, 935, 957, 1263, 1740, 2349, 2483
Bme18I	GGWCC	5 cut(s)	1265, 1883, 2390, 2437, 2684
BmeT110I	CYCGRG	2 cut(s)	810, 2433
BmgBI	CACGTC	1 cut(s)	2570
BmgT120I	GGNCC	7 cut(s)	806, 1187, 1265, 1883, 2390, 2437, 2684
BmrFI	CCNGG	8 cut(s)	292, 504, 935, 957, 1263, 1740, 2349, 2483
BmrI	ACTGGG	1 cut(s)	1697
BmuI	ACTGGG	1 cut(s)	1697
BplI	GAGNNNNNCTC	2 cut(s)	1025, 1057
BpmI	CTGGAG	1 cut(s)	274
BpuEI	CTTGAG	4 cut(s)	428, 744, 1052, 1472
BsaAI	YACGTR	1 cut(s)	2144
BsaBI	GATNNNNATC	1 cut(s)	2125
BsaJI	CCNNGG	6 cut(s)	291, 407, 463, 933, 1182, 2432
BsaWI	WCCGGW	1 cut(s)	1565
Bsc4I	CCNNNNNNNGG	6 cut(s)	180, 568, 921, 956, 2074, 2693
Bse118I	RCCGGY	1 cut(s)	1565
Bse3DI	GCAATG	1 cut(s)	1858
Bse8I	GATNNNNATC	1 cut(s)	2125
BseBI	CCWGG	8 cut(s)	292, 504, 935, 957, 1263, 1740, 2349, 2483
BseDI	CCNNGG	6 cut(s)	291, 407, 463, 933, 1182, 2432
BseGI	GGATG	4 cut(s)	1010, 1938, 2322, 2334
BseJI	GATNNNNATC	1 cut(s)	2125
BseLI	CCNNNNNNNGG	6 cut(s)	180, 568, 921, 956, 2074, 2693
BseMI	GCAATG	1 cut(s)	1858
BseRI	GAGGAG	4 cut(s)	707, 1587, 2013, 2149
BseSI	GKGCMC	1 cut(s)	688
BseXI	GCAGC	7 cut(s)	205, 410, 2083, 2090, 2134, 2283, 2689
BseYI	CCCAGC	1 cut(s)	415
BsgI	GTGCAG	1 cut(s)	42
BshFI	GGCC	5 cut(s)	502, 561, 807, 816, 1189
BshNI	GGYRCC	3 cut(s)	685, 2332, 2662
BshTI	ACCGGT	1 cut(s)	1565
BsiHKAI	GWGCWC	1 cut(s)	2223
BsiHKCI	CYCGRG	2 cut(s)	810, 2433
BsiSI	CCGG	1 cut(s)	1566
BslFI	GGGAC	6 cut(s)	212, 1876, 2272, 2353, 2403, 2423
BslI	CCNNNNNNNGG	6 cut(s)	180, 568, 921, 956, 2074, 2693
BsmAI	GTCTC	5 cut(s)	586, 1372, 2170, 2576, 2607
BsmBI	CGTCTC	2 cut(s)	2170, 2576
BsmFI	GGGAC	6 cut(s)	212, 1876, 2272, 2353, 2403, 2423
BsmI	GAATGC	2 cut(s)	232, 1128
BsnI	GGCC	5 cut(s)	502, 561, 807, 816, 1189
BsoBI	CYCGRG	2 cut(s)	810, 2433
Bsp1286I	GDGCHC	2 cut(s)	688, 2223
Bsp1407I	TGTACA	1 cut(s)	1890
BspACI	CCGC	4 cut(s)	992, 2099, 2393, 2645
BspANI	GGCC	5 cut(s)	502, 561, 807, 816, 1189
BspHI	TCATGA	2 cut(s)	1195, 1351
BspMI	ACCTGC	1 cut(s)	1219
BspT107I	GGYRCC	3 cut(s)	685, 2332, 2662
BsrDI	GCAATG	1 cut(s)	1858
BsrFI	RCCGGY	1 cut(s)	1565
BsrGI	TGTACA	1 cut(s)	1890
BssAI	RCCGGY	1 cut(s)	1565
BssECI	CCNNGG	6 cut(s)	291, 407, 463, 933, 1182, 2432
BssNAI	GTATAC	1 cut(s)	783
BssSI	CACGAG	1 cut(s)	828
BssT1I	CCWWGG	2 cut(s)	407, 1182
Bst1107I	GTATAC	1 cut(s)	783
Bst2BI	CACGAG	1 cut(s)	828
Bst2UI	CCWGG	8 cut(s)	292, 504, 935, 957, 1263, 1740, 2349, 2483
Bst4CI	ACNGT	4 cut(s)	486, 893, 1786, 2464
Bst6I	CTCTTC	4 cut(s)	1479, 1540, 2176, 2646
BstAUI	TGTACA	1 cut(s)	1890
BstBAI	YACGTR	1 cut(s)	2144
BstC8I	GCNNGC	3 cut(s)	241, 2112, 2397
BstENI	CCTNNNNNAGG	1 cut(s)	566
BstF5I	GGATG	4 cut(s)	1010, 1938, 2322, 2334
BstHHI	GCGC	3 cut(s)	1000, 1041, 2116
BstMAI	GTCTC	5 cut(s)	586, 1372, 2170, 2576, 2607
BstNI	CCWGG	8 cut(s)	292, 504, 935, 957, 1263, 1740, 2349, 2483
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	8 cut(s)	290, 502, 933, 955, 1261, 1738, 2347, 2481
BstSFI	CTRYAG	2 cut(s)	589, 1386
BstSLI	GKGCMC	1 cut(s)	688
BstV1I	GCAGC	7 cut(s)	205, 410, 2083, 2090, 2134, 2283, 2689
BstX2I	RGATCY	3 cut(s)	361, 1706, 1735
BstXI	CCANNNNNNTGG	1 cut(s)	510
BstYI	RGATCY	3 cut(s)	361, 1706, 1735
BstZ17I	GTATAC	1 cut(s)	783
BsuI	GTATCC	2 cut(s)	518, 650
BsuRI	GGCC	5 cut(s)	502, 561, 807, 816, 1189
BtrI	CACGTC	1 cut(s)	2570
BtsCI	GGATG	4 cut(s)	1010, 1938, 2322, 2334
BtsI	GCAGTG	2 cut(s)	25, 2210
BtsIMutI	CAGTG	6 cut(s)	25, 496, 1685, 2210, 2459, 2679
BveI	ACCTGC	1 cut(s)	1219
Cac8I	GCNNGC	3 cut(s)	241, 2112, 2397
CciI	TCATGA	2 cut(s)	1195, 1351
CfoI	GCGC	3 cut(s)	1000, 1041, 2116
Cfr10I	RCCGGY	1 cut(s)	1565
Cfr13I	GGNCC	7 cut(s)	806, 1187, 1265, 1883, 2390, 2437, 2684
CseI	GACGC	2 cut(s)	418, 1370
CsiI	ACCWGGT	1 cut(s)	1261
Csp6I	GTAC	4 cut(s)	889, 1515, 1891, 2354
CspAI	ACCGGT	1 cut(s)	1565
CspCI	CAANNNNNGTGG	2 cut(s)	1507, 1542
CviQI	GTAC	4 cut(s)	889, 1515, 1891, 2354
EaeI	YGGCCR	1 cut(s)	500
Eam1104I	CTCTTC	4 cut(s)	1479, 1540, 2176, 2646
EarI	CTCTTC	4 cut(s)	1479, 1540, 2176, 2646
Ecl136II	GAGCTC	1 cut(s)	2221
Eco130I	CCWWGG	2 cut(s)	407, 1182
Eco147I	AGGCCT	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	2223
Eco47I	GGWCC	5 cut(s)	1265, 1883, 2390, 2437, 2684
Eco53kI	GAGCTC	1 cut(s)	2221
Eco57I	CTGAAG	5 cut(s)	297, 459, 2172, 2276, 2288
Eco72I	CACGTG	1 cut(s)	2144
Eco88I	CYCGRG	2 cut(s)	810, 2433
EcoICRI	GAGCTC	1 cut(s)	2221
EcoNI	CCTNNNNNAGG	1 cut(s)	566
EcoO109I	RGGNCCY	2 cut(s)	1265, 2437
EcoRI	GAATTC	1 cut(s)	1120
EcoRII	CCWGG	8 cut(s)	290, 502, 933, 955, 1261, 1738, 2347, 2481
EcoT14I	CCWWGG	2 cut(s)	407, 1182
EcoT22I	ATGCAT	2 cut(s)	12, 616
EcoT38I	GRGCYC	1 cut(s)	2223
ErhI	CCWWGG	2 cut(s)	407, 1182
Esp3I	CGTCTC	2 cut(s)	2170, 2576
FalI	AAGNNNNNCTT	6 cut(s)	513, 545, 753, 785, 1166, 1198
FaqI	GGGAC	6 cut(s)	212, 1876, 2272, 2353, 2403, 2423
FauI	CCCGC	2 cut(s)	985, 2092
FauNDI	CATATG	1 cut(s)	2589
FbaI	TGATCA	2 cut(s)	1303, 2449
FblI	GTMKAC	1 cut(s)	782
Fnu4HI	GCNGC	7 cut(s)	219, 399, 2079, 2097, 2148, 2297, 2703
FokI	GGATG	4 cut(s)	1017, 1945, 2329, 2341
FriOI	GRGCYC	1 cut(s)	2223
Fsp4HI	GCNGC	7 cut(s)	219, 399, 2079, 2097, 2148, 2297, 2703
FspBI	CTAG	3 cut(s)	647, 1512, 2444
GlaI	GCGC	3 cut(s)	999, 1040, 2115
GluI	GCNGC	7 cut(s)	219, 399, 2079, 2097, 2148, 2297, 2703
GsaI	CCCAGC	1 cut(s)	419
GsuI	CTGGAG	1 cut(s)	274
HaeIII	GGCC	5 cut(s)	502, 561, 807, 816, 1189
HapII	CCGG	1 cut(s)	1566
HgaI	GACGC	2 cut(s)	418, 1370
HhaI	GCGC	3 cut(s)	1000, 1041, 2116
Hin6I	GCGC	3 cut(s)	998, 1039, 2114
HinP1I	GCGC	3 cut(s)	998, 1039, 2114
HindIII	AAGCTT	1 cut(s)	140
HpaII	CCGG	1 cut(s)	1566
HphI	GGTGA	7 cut(s)	118, 145, 179, 741, 1163, 1530, 1868
Hpy166II	GTNNAC	1 cut(s)	783
Hpy8I	GTNNAC	1 cut(s)	783
HpyCH4III	ACNGT	4 cut(s)	486, 893, 1786, 2464
HpyCH4IV	ACGT	2 cut(s)	2143, 2569
HpySE526I	ACGT	2 cut(s)	2143, 2569
HspAI	GCGC	3 cut(s)	998, 1039, 2114
KflI	GGGWCCC	1 cut(s)	2437
Ksp22I	TGATCA	2 cut(s)	1303, 2449
LmnI	GCTCC	7 cut(s)	152, 293, 852, 959, 1513, 2557, 2699
Lsp1109I	GCAGC	7 cut(s)	205, 410, 2083, 2090, 2134, 2283, 2689
MabI	ACCWGGT	1 cut(s)	1261
MaeI	CTAG	3 cut(s)	647, 1512, 2444
MaeII	ACGT	2 cut(s)	2143, 2569
MaeIII	GTNAC	7 cut(s)	41, 133, 167, 716, 1027, 1796, 2464
MfeI	CAATTG	1 cut(s)	2271
MflI	RGATCY	3 cut(s)	361, 1706, 1735
MhlI	GDGCHC	2 cut(s)	688, 2223
MlsI	TGGCCA	1 cut(s)	502
MluNI	TGGCCA	1 cut(s)	502
MlyI	GAGTC	5 cut(s)	69, 1289, 1846, 2051, 2461
MmeI	TCCRAC	5 cut(s)	824, 874, 1646, 1768, 1976
Mox20I	TGGCCA	1 cut(s)	502
Mph1103I	ATGCAT	2 cut(s)	12, 616
MroXI	GAANNNNTTC	2 cut(s)	795, 2618
MscI	TGGCCA	1 cut(s)	502
MseI	TTAA	9 cut(s)	54, 705, 861, 917, 1059, 1163, 1497, 1665, 2690
MslI	CAYNNNNRTG	1 cut(s)	2462
Msp20I	TGGCCA	1 cut(s)	502
MspA1I	CMGCKG	3 cut(s)	2081, 2096, 2296
MspI	CCGG	1 cut(s)	1566
MspR9I	CCNGG	8 cut(s)	292, 504, 935, 957, 1263, 1740, 2349, 2483
MunI	CAATTG	1 cut(s)	2271
Mva1269I	GAATGC	2 cut(s)	232, 1128
MvaI	CCWGG	8 cut(s)	292, 504, 935, 957, 1263, 1740, 2349, 2483
NdeI	CATATG	1 cut(s)	2589
NmuCI	GTSAC	5 cut(s)	41, 133, 167, 716, 2464
NsiI	ATGCAT	2 cut(s)	12, 616
NspI	RCATGY	1 cut(s)	14
PaeR7I	CTCGAG	1 cut(s)	810
PagI	TCATGA	2 cut(s)	1195, 1351
PceI	AGGCCT	1 cut(s)	561
PctI	GAATGC	2 cut(s)	232, 1128
PdmI	GAANNNNTTC	2 cut(s)	795, 2618
PflFI	GACNNNGTC	3 cut(s)	941, 1364, 2599
PflMI	CCANNNNNTGG	1 cut(s)	180
PfoI	TCCNGGA	2 cut(s)	955, 2347
PinAI	ACCGGT	1 cut(s)	1565
PkrI	GCNGC	7 cut(s)	220, 400, 2080, 2098, 2149, 2298, 2704
PleI	GAGTC	5 cut(s)	68, 1288, 1845, 2051, 2461
PmaCI	CACGTG	1 cut(s)	2144
PmlI	CACGTG	1 cut(s)	2144
PpsI	GAGTC	5 cut(s)	68, 1288, 1845, 2051, 2461
Ppu21I	YACGTR	1 cut(s)	2144
PpuMI	RGGWCCY	2 cut(s)	1265, 2437
Psp124BI	GAGCTC	1 cut(s)	2223
Psp5II	RGGWCCY	2 cut(s)	1265, 2437
Psp6I	CCWGG	8 cut(s)	290, 502, 933, 955, 1261, 1738, 2347, 2481
PspCI	CACGTG	1 cut(s)	2144
PspFI	CCCAGC	1 cut(s)	415
PspGI	CCWGG	8 cut(s)	290, 502, 933, 955, 1261, 1738, 2347, 2481
PspPI	GGNCC	7 cut(s)	806, 1187, 1265, 1883, 2390, 2437, 2684
PspPPI	RGGWCCY	2 cut(s)	1265, 2437
PspXI	VCTCGAGB	1 cut(s)	810
PsuI	RGATCY	3 cut(s)	361, 1706, 1735
PsyI	GACNNNGTC	3 cut(s)	941, 1364, 2599
PvuII	CAGCTG	3 cut(s)	2081, 2096, 2296
RsaI	GTAC	4 cut(s)	890, 1516, 1892, 2355
RsaNI	GTAC	4 cut(s)	889, 1515, 1891, 2354
RseI	CAYNNNNRTG	1 cut(s)	2462
SacI	GAGCTC	1 cut(s)	2223
SaqAI	TTAA	9 cut(s)	54, 705, 861, 917, 1059, 1163, 1497, 1665, 2690
SatI	GCNGC	7 cut(s)	219, 399, 2079, 2097, 2148, 2297, 2703
Sau96I	GGNCC	7 cut(s)	806, 1187, 1265, 1883, 2390, 2437, 2684
SchI	GAGTC	5 cut(s)	69, 1289, 1846, 2051, 2461
ScrFI	CCNGG	8 cut(s)	292, 504, 935, 957, 1263, 1740, 2349, 2483
SduI	GDGCHC	2 cut(s)	688, 2223
SexAI	ACCWGGT	1 cut(s)	1261
SfcI	CTRYAG	2 cut(s)	589, 1386
SfiI	GGCCNNNNNGGCC	1 cut(s)	813
Sfr274I	CTCGAG	1 cut(s)	810
SinI	GGWCC	5 cut(s)	1265, 1883, 2390, 2437, 2684
SlaI	CTCGAG	1 cut(s)	810
SmiMI	CAYNNNNRTG	1 cut(s)	2462
SmlI	CTYRAG	5 cut(s)	443, 759, 810, 1067, 1451
SmoI	CTYRAG	5 cut(s)	443, 759, 810, 1067, 1451
SseBI	AGGCCT	1 cut(s)	561
SsiI	CCGC	4 cut(s)	992, 2099, 2393, 2645
SspI	AATATT	1 cut(s)	796
SspMI	CTAG	3 cut(s)	647, 1512, 2444
SstI	GAGCTC	1 cut(s)	2223
StuI	AGGCCT	1 cut(s)	561
StyD4I	CCNGG	8 cut(s)	290, 502, 933, 955, 1261, 1738, 2347, 2481
StyI	CCWWGG	2 cut(s)	407, 1182
TaaI	ACNGT	4 cut(s)	486, 893, 1786, 2464
TaiI	ACGT	2 cut(s)	2146, 2572
TaqI	TCGA	5 cut(s)	811, 1255, 1283, 1793, 2132
TaqII	GACCGA	1 cut(s)	455
TatI	WGTACW	3 cut(s)	888, 1890, 2353
Tru1I	TTAA	9 cut(s)	54, 705, 861, 917, 1059, 1163, 1497, 1665, 2690
Tru9I	TTAA	9 cut(s)	54, 705, 861, 917, 1059, 1163, 1497, 1665, 2690
TscAI	CASTG	6 cut(s)	25, 503, 1692, 2217, 2459, 2686
TseFI	GTSAC	5 cut(s)	41, 133, 167, 716, 2464
TseI	GCWGC	7 cut(s)	218, 398, 2078, 2096, 2147, 2296, 2702
Tsp45I	GTSAC	5 cut(s)	41, 133, 167, 716, 2464
TspGWI	ACGGA	1 cut(s)	714
TspRI	CASTG	6 cut(s)	25, 503, 1692, 2217, 2459, 2686
Tth111I	GACNNNGTC	3 cut(s)	941, 1364, 2599
Van91I	CCANNNNNTGG	1 cut(s)	180
VpaK11BI	GGWCC	5 cut(s)	1265, 1883, 2390, 2437, 2684
XagI	CCTNNNNNAGG	1 cut(s)	566
XapI	RAATTY	4 cut(s)	313, 392, 986, 1120
XceI	RCATGY	1 cut(s)	14
XhoI	CTCGAG	1 cut(s)	810
XmiI	GTMKAC	1 cut(s)	782
XmnI	GAANNNNTTC	2 cut(s)	795, 2618
XspI	CTAG	3 cut(s)	647, 1512, 2444
Zsp2I	ATGCAT	2 cut(s)	12, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.