Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001667

Physical Location & Seq

Genomic Coordinates Forward (+)

64615532 .. 64616639

Gene Structure 1108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG481500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGAATTCTTGCATTCCTGATTGGAACTTTGAGAGTGATCCCCCTTTAACCAATCAAAAGAAACCCTCGGGGCCAGATCATGAACTAGTAGAGCTGTTATGGAGAAATGGGCAGGTAGTTTTGCACAGCCAAACAAATCGAAAACCAGGTCCTAATCCTAATGAGTCGAGGCAAGTTCAGAAACATGATCAAATAAGGGTTGGTGGGTTCTATGGGAACTCAGGTAATTTGATTCATGATGAGGACGCAGTCTCCATGATCCAATACCCTATAGAAGATTCCTTTGATAAAGAGTTTTCCCATTTCTTTTCTGAACTGCCTTCCTGTGATTCACTTGAGATTGAAAAGCCAATCAAACAATTTGGAGAAGAGAAGTTTGTTAAGTTTGATGCTCCTAGTACCACCCATCTTGTTTCCTCTTCACCCCAACCTAATGTGAAGTCCTCTACAGGTGTGGCATATCCTGAAAATCCAATGCCTCCTCCAAGATTTCAGATCAGTAATCCAACTGAGAAAAATCAAAATCTTGGAGGCTTGGGGAAAATAGTTAATTTTTCTCAATTTTCAACACTGGGAAAGGGTGGTGTAGGATCTTCCAGAAAACAATTAGGAGGGAAAGATCCTGGTAAGTTGAATCAAGCAGAAGTTAGAGAGTGTTCTATGATGACTGTCGGATCGAGTTACTCAGGTAGCAACCAAGTTCCTAATGACTTTGATGTGAGTCGGGCTTCAAGCAATGGTGATGGGACTACTGGTTTTTCTACTGGACCCTTGTACAACAATGTTCAAAAGATGATGCCTCTGAGTGAGGGAGGGATGACAGAAACCCTTGATCCAACTCTTACTTCATCTTCGGGTGGTTCTGGCAGTAGTTTTGGCAGAGGAGGGAAGCAGTCTAATGTTGTCAATAGCAACAAAAGAAAGGGTAGAGATGCAGAGGACTCAGAGTGCCAAAGTGAGGTAAAAACCTTCTCCCCAAGACTTGACTACCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009642 GO:0009645 GO:0009692 GO:0009693 GO:0009704 GO:0009791 GO:0009889 GO:0009966 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0010244 GO:0010468 GO:0010556 GO:0010600 GO:0010646 GO:0010817 GO:0010928 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043449 GO:0043450 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0046885 GO:0048583 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0080090 GO:0090354 GO:0097159 GO:0104004 GO:0140110 GO:1900673 GO:1900674 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

HLH

Protein Analysis

331

Amino Acids

36.01

Weight (kDa)

5.61

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43010 AT2G43010 AT2G43010 AT2G43010 AT2G43010 AT3G59060 AT3G59060 AT3G59060 AT3G59060
fragaria_vesca	FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940
malus_domestica	MD09G1146000.v1.1 MD17G1132600.v1.1
prunus_persica	Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1
pyrus_communis	pycom09g06630 pycom17g12610
rosa_chinensis	RchiOBHm_Chr2g0152511
rosa_laevigata	RLG00000020642
rosa_multiflora	Rmu_sc0005366.1_g000001 Rmu_sc0027733.1_g000001 Rmu_sc0027737.1_g000001 Rmu_sc0034754.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095640
rosa_rugosa	Rorug02G0434000 Rorug02G0434100 Rorug02G0434200
rosa_samantha	Rh2AG495400 Rh2BG507300 Rh2CG481500 Rh2CG481600 Rh2DG518600
rosa_wichuraiana	Rw2G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	103
AclWI	GGATC	6 cut(s)	32, 253, 598, 614, 682, 827
AcsI	RAATTY	1 cut(s)	4
AfaI	GTAC	2 cut(s)	400, 776
AfiI	CCNNNNNNNGG	1 cut(s)	958
AgsI	TTSAA	5 cut(s)	344, 567, 634, 732, 788
AhlI	ACTAGT	1 cut(s)	85
AjnI	CCWGG	2 cut(s)	145, 622
AjuI	GAANNNNNNNTTGG	2 cut(s)	829, 861
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	256
AlwI	GGATC	6 cut(s)	32, 253, 598, 614, 682, 827
Ama87I	CYCGRG	1 cut(s)	67
AoxI	GGCC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	4
ArsI	GACNNNNNNTTYG	2 cut(s)	133, 165
AspS9I	GGNCC	3 cut(s)	71, 149, 767
AsuHPI	GGTGA	2 cut(s)	414, 752
AvaI	CYCGRG	1 cut(s)	67
AvaII	GGWCC	2 cut(s)	149, 767
BccI	CCATC	2 cut(s)	414, 737
BciT130I	CCWGG	2 cut(s)	147, 624
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	256
BcuI	ACTAGT	1 cut(s)	85
BfaI	CTAG	2 cut(s)	86, 396
BfmI	CTRYAG	2 cut(s)	270, 447
BfuAI	ACCTGC	1 cut(s)	103
Bme1390I	CCNGG	2 cut(s)	147, 624
Bme18I	GGWCC	2 cut(s)	149, 767
BmeT110I	CYCGRG	1 cut(s)	67
BmgT120I	GGNCC	3 cut(s)	71, 149, 767
BmiI	GGNNCC	2 cut(s)	72, 769
BmrFI	CCNGG	2 cut(s)	147, 624
BmrI	ACTGGG	1 cut(s)	581
BmsI	GCATC	3 cut(s)	379, 786, 922
BmuI	ACTGGG	1 cut(s)	581
BpuEI	CTTGAG	1 cut(s)	356
BsaJI	CCNNGG	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	958
Bse1I	ACTGG	3 cut(s)	576, 757, 769
Bse3DI	GCAATG	1 cut(s)	742
BseBI	CCWGG	2 cut(s)	147, 624
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	822
BseLI	CCNNNNNNNGG	1 cut(s)	958
BseMI	GCAATG	1 cut(s)	742
BseMII	CTCAG	5 cut(s)	234, 501, 699, 794, 957
BseNI	ACTGG	3 cut(s)	576, 757, 769
BseRI	GAGGAG	2 cut(s)	471, 897
BshFI	GGCC	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	760
BslI	CCNNNNNNNGG	1 cut(s)	958
BsmAI	GTCTC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	760
BsmI	GAATGC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	73
BsoBI	CYCGRG	1 cut(s)	67
Bsp1407I	TGTACA	1 cut(s)	774
Bsp143I	GATC	9 cut(s)	37, 76, 187, 258, 495, 590, 619, 674, 832
BspANI	GGCC	1 cut(s)	73
BspCNI	CTCAG	5 cut(s)	233, 502, 698, 795, 956
BspHI	TCATGA	2 cut(s)	79, 235
BspLI	GGNNCC	2 cut(s)	72, 769
BspMI	ACCTGC	1 cut(s)	103
BspPI	GGATC	6 cut(s)	32, 253, 598, 614, 682, 827
BsrDI	GCAATG	1 cut(s)	742
BsrGI	TGTACA	1 cut(s)	774
BsrI	ACTGG	3 cut(s)	576, 757, 769
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	9 cut(s)	37, 76, 187, 258, 495, 590, 619, 674, 832
Bst2UI	CCWGG	2 cut(s)	147, 624
Bst4CI	ACNGT	1 cut(s)	670
Bst6I	CTCTTC	2 cut(s)	363, 424
BstAUI	TGTACA	1 cut(s)	774
BstDEI	CTNAG	5 cut(s)	220, 510, 685, 803, 943
BstF5I	GGATG	1 cut(s)	822
BstKTI	GATC	9 cut(s)	40, 79, 190, 261, 498, 593, 622, 677, 835
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	9 cut(s)	37, 76, 187, 258, 495, 590, 619, 674, 832
BstNI	CCWGG	2 cut(s)	147, 624
BstSCI	CCNGG	2 cut(s)	145, 622
BstSFI	CTRYAG	2 cut(s)	270, 447
BstX2I	RGATCY	2 cut(s)	590, 619
BstYI	RGATCY	2 cut(s)	590, 619
BsuRI	GGCC	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	822
BtsIMutI	CAGTG	1 cut(s)	569
BveI	ACCTGC	1 cut(s)	103
CciI	TCATGA	2 cut(s)	79, 235
Cfr13I	GGNCC	3 cut(s)	71, 149, 767
CseI	GACGC	1 cut(s)	254
CsiI	ACCWGGT	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	399, 775
CspCI	CAANNNNNGTGG	2 cut(s)	391, 426
CviAII	CATG	4 cut(s)	80, 185, 236, 256
CviJI	RGCY	6 cut(s)	73, 94, 129, 349, 534, 728
CviKI_1	RGCY	6 cut(s)	73, 94, 129, 349, 534, 728
CviQI	GTAC	2 cut(s)	399, 775
DdeI	CTNAG	5 cut(s)	220, 510, 685, 803, 943
DpnI	GATC	9 cut(s)	39, 78, 189, 260, 497, 592, 621, 676, 834
DpnII	GATC	9 cut(s)	37, 76, 187, 258, 495, 590, 619, 674, 832
Eam1104I	CTCTTC	2 cut(s)	363, 424
EarI	CTCTTC	2 cut(s)	363, 424
Eco47I	GGWCC	2 cut(s)	149, 767
Eco88I	CYCGRG	1 cut(s)	67
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	145, 622
FaeI	CATG	4 cut(s)	83, 188, 239, 259
FaiI	YATR	9 cut(s)	81, 100, 186, 213, 237, 257, 272, 460, 662
FaqI	GGGAC	1 cut(s)	760
FatI	CATG	4 cut(s)	79, 184, 235, 255
FbaI	TGATCA	1 cut(s)	187
FokI	GGATG	1 cut(s)	829
FspBI	CTAG	2 cut(s)	86, 396
HaeIII	GGCC	1 cut(s)	73
HgaI	GACGC	1 cut(s)	254
Hin1II	CATG	4 cut(s)	83, 188, 239, 259
HinfI	GANTC	7 cut(s)	164, 232, 278, 329, 634, 721, 941
HphI	GGTGA	2 cut(s)	414, 752
Hpy188I	TCNGA	6 cut(s)	180, 313, 495, 674, 804, 946
Hpy188III	TCNNGA	5 cut(s)	17, 80, 236, 464, 597
HpyAV	CCTTC	2 cut(s)	330, 979
HpyCH4III	ACNGT	1 cut(s)	670
HpyCH4V	TGCA	3 cut(s)	12, 124, 935
HpyF3I	CTNAG	5 cut(s)	220, 510, 685, 803, 943
Hsp92II	CATG	4 cut(s)	83, 188, 239, 259
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	9 cut(s)	37, 76, 187, 258, 495, 590, 619, 674, 832
LmnI	GCTCC	1 cut(s)	397
LweI	GCATC	3 cut(s)	379, 786, 922
MabI	ACCWGGT	1 cut(s)	145
MaeI	CTAG	2 cut(s)	86, 396
MaeIII	GTNAC	1 cut(s)	680
MalI	GATC	9 cut(s)	39, 78, 189, 260, 497, 592, 621, 676, 834
MboI	GATC	9 cut(s)	37, 76, 187, 258, 495, 590, 619, 674, 832
MboII	GAAGA	5 cut(s)	287, 380, 411, 585, 843
MflI	RGATCY	2 cut(s)	590, 619
MluCI	AATT	6 cut(s)	4, 226, 359, 550, 560, 605
MlyI	GAGTC	3 cut(s)	173, 730, 935
MmeI	TCCRAC	3 cut(s)	530, 652, 860
MseI	TTAA	3 cut(s)	47, 381, 549
MspR9I	CCNGG	2 cut(s)	147, 624
Mva1269I	GAATGC	1 cut(s)	12
MvaI	CCWGG	2 cut(s)	147, 624
NdeII	GATC	9 cut(s)	37, 76, 187, 258, 495, 590, 619, 674, 832
NlaIII	CATG	4 cut(s)	83, 188, 239, 259
NlaIV	GGNNCC	2 cut(s)	72, 769
PagI	TCATGA	2 cut(s)	79, 235
PctI	GAATGC	1 cut(s)	12
PfeI	GAWTC	4 cut(s)	232, 278, 329, 634
PflFI	GACNNNGTC	1 cut(s)	248
PleI	GAGTC	3 cut(s)	172, 729, 935
PpsI	GAGTC	3 cut(s)	172, 729, 935
PpuMI	RGGWCCY	1 cut(s)	149
Psp5II	RGGWCCY	1 cut(s)	149
Psp6I	CCWGG	2 cut(s)	145, 622
PspGI	CCWGG	2 cut(s)	145, 622
PspN4I	GGNNCC	2 cut(s)	72, 769
PspPI	GGNCC	3 cut(s)	71, 149, 767
PspPPI	RGGWCCY	1 cut(s)	149
PsuI	RGATCY	2 cut(s)	590, 619
PsyI	GACNNNGTC	1 cut(s)	248
RsaI	GTAC	2 cut(s)	400, 776
RsaNI	GTAC	2 cut(s)	399, 775
SaqAI	TTAA	3 cut(s)	47, 381, 549
Sau3AI	GATC	9 cut(s)	37, 76, 187, 258, 495, 590, 619, 674, 832
Sau96I	GGNCC	3 cut(s)	71, 149, 767
SchI	GAGTC	3 cut(s)	173, 730, 935
ScrFI	CCNGG	2 cut(s)	147, 624
SexAI	ACCWGGT	1 cut(s)	145
SfaNI	GCATC	3 cut(s)	379, 786, 922
SfcI	CTRYAG	2 cut(s)	270, 447
SinI	GGWCC	2 cut(s)	149, 767
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
SpeI	ACTAGT	1 cut(s)	85
Sse9I	AATT	6 cut(s)	4, 226, 359, 550, 560, 605
SspMI	CTAG	2 cut(s)	86, 396
StyD4I	CCNGG	2 cut(s)	145, 622
TaaI	ACNGT	1 cut(s)	670
TaqI	TCGA	3 cut(s)	139, 167, 677
TasI	AATT	6 cut(s)	4, 226, 359, 550, 560, 605
TatI	WGTACW	1 cut(s)	774
TfiI	GAWTC	4 cut(s)	232, 278, 329, 634
Tru1I	TTAA	3 cut(s)	47, 381, 549
Tru9I	TTAA	3 cut(s)	47, 381, 549
TscAI	CASTG	1 cut(s)	576
TspDTI	ATGAA	4 cut(s)	17, 96, 224, 837
TspRI	CASTG	1 cut(s)	576
Tth111I	GACNNNGTC	1 cut(s)	248
VpaK11BI	GGWCC	2 cut(s)	149, 767
XapI	RAATTY	1 cut(s)	4
XspI	CTAG	2 cut(s)	86, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.