Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001667

Physical Location & Seq

Genomic Coordinates Reverse (-)

17029516 .. 17038539

Gene Structure 9024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00095640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2739 bp

ATGGCTATGCATGTTAGCAGTGCAGGGTTTTCTATTTTCAGTCACAGGAGAGTTAATAGAGTCAGAGCTGTTGCTTCTGAAAATGTGAGCATAGAGGAACAGAAGGTGAAGTTGGGGGCTTCTGAGTTGAAGGTGACAAAGCTTGGGATTGGAGCTTGGTCTTGGGGTGACACCAGTTATTGGAATAACTTTGAATGGGATGATAGGAAGATGAAGGCTGCTAAGAATGCGTTTGATGCCAGCATTGATGGTGGCATAACCTTCTTTGATACTGCTGAAGTTTATGGTTCTAGGGCTTCTTTCGGTGCCATAAATTCTGAAACTTTACTAGGAAGATTTATCAAGGAAAGGAAAGAAAAGGATCCAGAAGTGGAGGTTGCTGTTGCAACCAAATTCGCAGCTTTGCCTTGGAGGCTGGGTCGGCAGAGCGTCCTCTCTGCCCTCAAGGATTCCCTCAGTCGCCTCAGTCTTTCTTCAGTAGAACTGTATCAACTCCACTGGCCAGGAGTATGGGGAAATGAAGGATACCTTGATGGTCTTGGAGATGCTGTTGAGCAAGGCCTTGTGAAGGCAGTTGGTGTCTCAAACTATAGAGAAAAGAGATTGCGTGATGCATACGAGAAACTCAAAAAGAGAGGTATCCCACTAGCATCAAACCAAGTGAATTACAGCCTCATATACAGGGCACCAGAGGAGAATGGAGTTAAGGCTACCTGTGACGAACTTGGGATCACTTTGATTGCCTATTCACCTATTGCGCAAGGTGTTCTTACAGGAAAGTATACACCTGAAAATATTCCAACTGGCCCTCGAGGCCAGATTTACACTCGTGATTTTCTTACAAAGCTCCAACCTCTGCTTAACAGAATCAAGGAAATAGGAGAGAAGTACAGTAAAACACCTACACAGGTAGCCTTAAACTGGCTAATAACCCAGGACAATGTCGTGCCAATTCCAGGAGCCAAAAATGCAGAACAGGCTATGGAATTTGCGGGTGCACTTGGATGGAAGCTCAACGATGATGAAGTAGCTGAGTTGCGCTCTTTGGCTTCCGAGATTAAACCTGATAGTTCCAAATCTGGGTATGCATCATTTTTTATTGGAACTTGTGTCTGTTCAGACATGAATTCTTGCATTCCTGATTGGAACTTTGAGGGTGATCTCCCTTTAACCAATCAAAAGAAACCCTCGGGGCCAGATCATGAACTAGTAGAGCTGTTATGGAGAAATGGGCAGGTAGTTTTGCACAGCCAAACAAATCGAAAACCAGGTCCTAATCCTAATGAGTCGAGGCAAGTTCAGAAACATGATCAAATAAGGGTTGGTGGGTTCTATGGGAACTCAGGTAATTTGATTCATGATGAGGACACAGTCTCCATGATCCAATACCCTCTAGAAGATTCCTTTGATAAAGAGTTTTCCCATTTCTTTTCTGAACTGCCTTCCTGTGATTCACTTGAGATTGAAAAGCCAATCAAACAATTTGGAGAAGAGAAGTTTGTTAAGTTTGATGCTCCTAATACCACCCATCTTGTTTCCTCTTCACCCCAACCTAATGTGAAGTCCTCTACCGGTGTGGCATATCCTGAAAATCCAATGCCTCCTCCAAGATTTCAGATCAGTAATCCAACGGAGAAAAATCAAAATCTTGGAGGCTTGGGGAAAATAGTTAATTTTTCTCAATTTTCAACACTGGGAAAGGGTGGTGTAGGATCTTCCAGAAAACAATTAGGAGGGAAAGATCCTGGTAAGTTGAATCAAGCAGAAGTTAGAGAGTGTTCTATGATGACTGTTGGATCGAGTTACTCAGGTAGCAACCAAGTTCCTAATGACTTTGATGTGAGTCGGGCTTCAAGCAATGGTGATGGGACAACTGGTTTTTCTACTGGACCCTTGTACAACAATGTTCAAAAGATGATGCCTCTGAGTGAGGGAGGGATGACAGAAACCCTTGATCCAACTCTTACTTCATCTTCGGGTGGTTCTGGCAGTAGTTTTGGCAGAGGAGGGAAGCAGTCTAATGTTGTCAATAGCAACAAAAGAAAGGGTAGAGATGCAGAGGACTCAGAGTGCCAAAGTGAGGCAGCTGAAATTGAATCAGCTGCGGGAAACAAGCCGGCGCAACGATCAGGATCATCGAGGAGGACACGTGCTGCTGAAGTCCATAATCTCTCAGAAAGGAGACGAAGAGATCGGATCAATGAGAAAATGAGGGCACTGCAAGAGCTCATACCTCATTCTAACAAGACAGACAAAGCATCAATGTTAGATGAGGCAATTGAATACTTGAAGTCTCTTCAGCTGCAACTTCAGGTAATGTGGATGGGAGGTGGGATGGCACCGATGATGTTTCCTGGAGTACAGCACTATATGTCCCGAATGGGAATGGGAATGGGACCGCCTGCCATGCCTTCTATGCATAATCTAATGCAATTACCTCGGGTCCCTCTAGTTGATCAGTGCATGACTGTGACTCCACCAACAAACCAGGCAGTAATGTTACAAACACCTGTTCTGAATCCTGTTGATTACCATAACCAGATGCAAAATCCCTCTATTCAGGAGCAATACGCACGTCTCATGGGATTCCATCATATGCAGACCATGTCTCAGCCTATGAATATGTTCAGATTCGGCTCTCAGCCTCTTCCGCAAAGTCAAATGATGGCACCAACTGGCATGAACACTGGACCTTTAAGTGGTGGAGCTGCAACTAATGATGCTTTGAGTGGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009642 GO:0009645 GO:0009692 GO:0009693 GO:0009704 GO:0009791 GO:0009889 GO:0009966 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0010244 GO:0010468 GO:0010556 GO:0010600 GO:0010646 GO:0010817 GO:0010928 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043449 GO:0043450 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0046885 GO:0048583 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0080090 GO:0090354 GO:0097159 GO:0104004 GO:0140110 GO:1900673 GO:1900674 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

HLH

Protein Analysis

912

Amino Acids

100.19

Weight (kDa)

7.26

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	47 - 349	4.8e-56	Aldo/keto reductase family
HLH	PF00010	720 - 767	1.2e-13	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	726 - 772	4e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43010 AT2G43010 AT2G43010 AT2G43010 AT2G43010 AT3G59060 AT3G59060 AT3G59060 AT3G59060
fragaria_vesca	FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940
malus_domestica	MD09G1146000.v1.1 MD17G1132600.v1.1
prunus_persica	Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1
pyrus_communis	pycom09g06630 pycom17g12610
rosa_chinensis	RchiOBHm_Chr2g0152511
rosa_laevigata	RLG00000020642
rosa_multiflora	Rmu_sc0005366.1_g000001 Rmu_sc0027733.1_g000001 Rmu_sc0027737.1_g000001 Rmu_sc0034754.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095640
rosa_rugosa	Rorug02G0434000 Rorug02G0434100 Rorug02G0434200
rosa_samantha	Rh2AG495400 Rh2BG507300 Rh2CG481500 Rh2CG481600 Rh2DG518600
rosa_wichuraiana	Rw2G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	810
Acc16I	TGCGCA	1 cut(s)	759
Acc36I	ACCTGC	1 cut(s)	1225
AccB1I	GGYRCC	4 cut(s)	305, 685, 2338, 2668
AccB7I	CCANNNNNTGG	1 cut(s)	180
AccI	GTMKAC	1 cut(s)	782
AciI	CCGC	4 cut(s)	992, 2105, 2399, 2651
AcoI	YGGCCR	1 cut(s)	500
AcsI	RAATTY	4 cut(s)	313, 392, 986, 1126
AcuI	CTGAAG	5 cut(s)	297, 459, 2178, 2282, 2294
AcvI	CACGTG	1 cut(s)	2150
AfaI	GTAC	3 cut(s)	890, 1898, 2361
AfiI	CCNNNNNNNGG	7 cut(s)	180, 568, 921, 956, 1080, 2080, 2699
AflIII	ACRYGT	1 cut(s)	2147
AgeI	ACCGGT	1 cut(s)	1571
AhlI	ACTAGT	1 cut(s)	1207
AjiI	CACGTC	1 cut(s)	2576
AjnI	CCWGG	7 cut(s)	502, 933, 955, 1267, 1744, 2353, 2487
AjuI	GAANNNNNNNTTGG	4 cut(s)	95, 127, 1951, 1983
Alw21I	GWGCWC	2 cut(s)	1000, 2229
Alw26I	GTCTC	6 cut(s)	586, 1378, 2176, 2298, 2582, 2613
Alw44I	GTGCAC	1 cut(s)	996
Ama87I	CYCGRG	3 cut(s)	810, 1189, 2439
AoxI	GGCC	5 cut(s)	500, 559, 805, 814, 1193
ApaLI	GTGCAC	1 cut(s)	996
ApeKI	GCWGC	7 cut(s)	218, 398, 2084, 2102, 2153, 2302, 2708
ApoI	RAATTY	4 cut(s)	313, 392, 986, 1126
ArsI	GACNNNNNNTTYG	2 cut(s)	1255, 1287
AsiGI	ACCGGT	1 cut(s)	1571
Asp700I	GAANNNNTTC	2 cut(s)	795, 2624
AspLEI	GCGC	3 cut(s)	760, 1041, 2122
AspS9I	GGNCC	7 cut(s)	806, 1193, 1271, 1889, 2396, 2443, 2690
AsuHPI	GGTGA	7 cut(s)	118, 145, 179, 741, 1169, 1536, 1874
AvaI	CYCGRG	3 cut(s)	810, 1189, 2439
AvaII	GGWCC	5 cut(s)	1271, 1889, 2396, 2443, 2690
BaeGI	GKGCMC	3 cut(s)	688, 1000, 2218
BalI	TGGCCA	1 cut(s)	502
BamHI	GGATCC	1 cut(s)	361
BanI	GGYRCC	4 cut(s)	305, 685, 2338, 2668
BanII	GRGCYC	1 cut(s)	2229
BauI	CACGAG	1 cut(s)	828
BbrPI	CACGTG	1 cut(s)	2150
Bbv12I	GWGCWC	2 cut(s)	1000, 2229
BbvI	GCAGC	7 cut(s)	205, 410, 2089, 2096, 2140, 2289, 2695
BccI	CCATC	9 cut(s)	242, 527, 999, 1536, 1859, 2317, 2329, 2598, 2659
BcgI	CGANNNNNNTGC	2 cut(s)	2420, 2454
BciT130I	CCWGG	7 cut(s)	504, 935, 957, 1269, 1746, 2355, 2489
BciVI	GTATCC	2 cut(s)	518, 650
BclI	TGATCA	2 cut(s)	1309, 2455
BcoDI	GTCTC	6 cut(s)	586, 1378, 2176, 2298, 2582, 2613
BcuI	ACTAGT	1 cut(s)	1207
BfaI	CTAG	6 cut(s)	291, 329, 647, 1208, 1394, 2450
BfmI	CTRYAG	1 cut(s)	589
BfuAI	ACCTGC	1 cut(s)	1225
BfuI	GTATCC	2 cut(s)	518, 650
BglI	GCCNNNNNGGC	2 cut(s)	412, 813
BisI	GCNGC	7 cut(s)	219, 399, 2085, 2103, 2154, 2303, 2709
BlsI	GCNGC	7 cut(s)	220, 400, 2086, 2104, 2155, 2304, 2710
Bme1390I	CCNGG	7 cut(s)	504, 935, 957, 1269, 1746, 2355, 2489
Bme18I	GGWCC	5 cut(s)	1271, 1889, 2396, 2443, 2690
BmeT110I	CYCGRG	3 cut(s)	810, 1189, 2439
BmgBI	CACGTC	1 cut(s)	2576
BmgT120I	GGNCC	7 cut(s)	806, 1193, 1271, 1889, 2396, 2443, 2690
BmrFI	CCNGG	7 cut(s)	504, 935, 957, 1269, 1746, 2355, 2489
BmrI	ACTGGG	1 cut(s)	1703
BmuI	ACTGGG	1 cut(s)	1703
BplI	GAGNNNNNCTC	2 cut(s)	1025, 1057
BpmI	CTGGAG	1 cut(s)	2376
BpuEI	CTTGAG	2 cut(s)	428, 1478
BsaAI	YACGTR	1 cut(s)	2150
BsaBI	GATNNNNATC	1 cut(s)	2131
BsaJI	CCNNGG	4 cut(s)	407, 933, 1188, 2438
BsaWI	WCCGGW	1 cut(s)	1571
Bsc4I	CCNNNNNNNGG	7 cut(s)	180, 568, 921, 956, 1080, 2080, 2699
Bse118I	RCCGGY	2 cut(s)	1571, 2116
Bse1I	ACTGG	9 cut(s)	174, 503, 808, 926, 1698, 1879, 1891, 2680, 2692
Bse3DI	GCAATG	1 cut(s)	1864
Bse8I	GATNNNNATC	1 cut(s)	2131
BseBI	CCWGG	7 cut(s)	504, 935, 957, 1269, 1746, 2355, 2489
BseDI	CCNNGG	4 cut(s)	407, 933, 1188, 2438
BseGI	GGATG	5 cut(s)	205, 1010, 1944, 2328, 2340
BseJI	GATNNNNATC	1 cut(s)	2131
BseLI	CCNNNNNNNGG	7 cut(s)	180, 568, 921, 956, 1080, 2080, 2699
BseMI	GCAATG	1 cut(s)	1864
BseNI	ACTGG	9 cut(s)	174, 503, 808, 926, 1698, 1879, 1891, 2680, 2692
BseRI	GAGGAG	4 cut(s)	707, 1593, 2019, 2155
BseSI	GKGCMC	3 cut(s)	688, 1000, 2218
BseXI	GCAGC	7 cut(s)	205, 410, 2089, 2096, 2140, 2289, 2695
BseYI	CCCAGC	1 cut(s)	415
BsgI	GTGCAG	1 cut(s)	42
BshFI	GGCC	5 cut(s)	502, 561, 807, 816, 1195
BshNI	GGYRCC	4 cut(s)	305, 685, 2338, 2668
BshTI	ACCGGT	1 cut(s)	1571
BsiHKAI	GWGCWC	2 cut(s)	1000, 2229
BsiHKCI	CYCGRG	3 cut(s)	810, 1189, 2439
BsiSI	CCGG	2 cut(s)	1572, 2117
BslFI	GGGAC	4 cut(s)	1882, 2359, 2409, 2429
BslI	CCNNNNNNNGG	7 cut(s)	180, 568, 921, 956, 1080, 2080, 2699
BsmAI	GTCTC	6 cut(s)	586, 1378, 2176, 2298, 2582, 2613
BsmBI	CGTCTC	2 cut(s)	2176, 2582
BsmFI	GGGAC	4 cut(s)	1882, 2359, 2409, 2429
BsmI	GAATGC	2 cut(s)	232, 1134
BsnI	GGCC	5 cut(s)	502, 561, 807, 816, 1195
BsoBI	CYCGRG	3 cut(s)	810, 1189, 2439
Bsp1286I	GDGCHC	4 cut(s)	688, 1000, 2218, 2229
Bsp1407I	TGTACA	1 cut(s)	1896
BspACI	CCGC	4 cut(s)	992, 2105, 2399, 2651
BspANI	GGCC	5 cut(s)	502, 561, 807, 816, 1195
BspHI	TCATGA	2 cut(s)	1201, 1357
BspMI	ACCTGC	1 cut(s)	1225
BspT107I	GGYRCC	4 cut(s)	305, 685, 2338, 2668
BsrDI	GCAATG	1 cut(s)	1864
BsrFI	RCCGGY	2 cut(s)	1571, 2116
BsrGI	TGTACA	1 cut(s)	1896
BsrI	ACTGG	9 cut(s)	174, 503, 808, 926, 1698, 1879, 1891, 2680, 2692
BssAI	RCCGGY	2 cut(s)	1571, 2116
BssECI	CCNNGG	4 cut(s)	407, 933, 1188, 2438
BssNAI	GTATAC	1 cut(s)	783
BssSI	CACGAG	1 cut(s)	828
BssT1I	CCWWGG	1 cut(s)	407
Bst1107I	GTATAC	1 cut(s)	783
Bst2BI	CACGAG	1 cut(s)	828
Bst2UI	CCWGG	7 cut(s)	504, 935, 957, 1269, 1746, 2355, 2489
Bst4CI	ACNGT	5 cut(s)	486, 893, 1372, 1792, 2470
Bst6I	CTCTTC	5 cut(s)	1485, 1546, 2182, 2301, 2652
BstAUI	TGTACA	1 cut(s)	1896
BstBAI	YACGTR	1 cut(s)	2150
BstC8I	GCNNGC	3 cut(s)	241, 2118, 2403
BstENI	CCTNNNNNAGG	1 cut(s)	566
BstF5I	GGATG	5 cut(s)	205, 1010, 1944, 2328, 2340
BstHHI	GCGC	3 cut(s)	760, 1041, 2122
BstMAI	GTCTC	6 cut(s)	586, 1378, 2176, 2298, 2582, 2613
BstNI	CCWGG	7 cut(s)	504, 935, 957, 1269, 1746, 2355, 2489
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	7 cut(s)	502, 933, 955, 1267, 1744, 2353, 2487
BstSFI	CTRYAG	1 cut(s)	589
BstSLI	GKGCMC	3 cut(s)	688, 1000, 2218
BstV1I	GCAGC	7 cut(s)	205, 410, 2089, 2096, 2140, 2289, 2695
BstX2I	RGATCY	3 cut(s)	361, 1712, 1741
BstXI	CCANNNNNNTGG	1 cut(s)	510
BstYI	RGATCY	3 cut(s)	361, 1712, 1741
BstZ17I	GTATAC	1 cut(s)	783
BsuI	GTATCC	2 cut(s)	518, 650
BsuRI	GGCC	5 cut(s)	502, 561, 807, 816, 1195
BtrI	CACGTC	1 cut(s)	2576
BtsCI	GGATG	5 cut(s)	205, 1010, 1944, 2328, 2340
BtsI	GCAGTG	2 cut(s)	25, 2216
BtsIMutI	CAGTG	6 cut(s)	25, 496, 1691, 2216, 2465, 2685
BveI	ACCTGC	1 cut(s)	1225
Cac8I	GCNNGC	3 cut(s)	241, 2118, 2403
CciI	TCATGA	2 cut(s)	1201, 1357
CfoI	GCGC	3 cut(s)	760, 1041, 2122
Cfr10I	RCCGGY	2 cut(s)	1571, 2116
Cfr13I	GGNCC	7 cut(s)	806, 1193, 1271, 1889, 2396, 2443, 2690
CseI	GACGC	1 cut(s)	418
CsiI	ACCWGGT	1 cut(s)	1267
Csp6I	GTAC	3 cut(s)	889, 1897, 2360
CspAI	ACCGGT	1 cut(s)	1571
CspCI	CAANNNNNGTGG	2 cut(s)	1513, 1548
CviQI	GTAC	3 cut(s)	889, 1897, 2360
EaeI	YGGCCR	1 cut(s)	500
Eam1104I	CTCTTC	5 cut(s)	1485, 1546, 2182, 2301, 2652
EarI	CTCTTC	5 cut(s)	1485, 1546, 2182, 2301, 2652
Ecl136II	GAGCTC	1 cut(s)	2227
Eco130I	CCWWGG	1 cut(s)	407
Eco147I	AGGCCT	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	2229
Eco47I	GGWCC	5 cut(s)	1271, 1889, 2396, 2443, 2690
Eco53kI	GAGCTC	1 cut(s)	2227
Eco57I	CTGAAG	5 cut(s)	297, 459, 2178, 2282, 2294
Eco72I	CACGTG	1 cut(s)	2150
Eco88I	CYCGRG	3 cut(s)	810, 1189, 2439
EcoICRI	GAGCTC	1 cut(s)	2227
EcoNI	CCTNNNNNAGG	1 cut(s)	566
EcoO109I	RGGNCCY	2 cut(s)	1271, 2443
EcoRI	GAATTC	1 cut(s)	1126
EcoRII	CCWGG	7 cut(s)	502, 933, 955, 1267, 1744, 2353, 2487
EcoT14I	CCWWGG	1 cut(s)	407
EcoT22I	ATGCAT	4 cut(s)	12, 616, 1090, 2421
EcoT38I	GRGCYC	1 cut(s)	2229
ErhI	CCWWGG	1 cut(s)	407
Esp3I	CGTCTC	2 cut(s)	2176, 2582
FalI	AAGNNNNNCTT	4 cut(s)	513, 545, 753, 785
FaqI	GGGAC	4 cut(s)	1882, 2359, 2409, 2429
FauI	CCCGC	2 cut(s)	985, 2098
FauNDI	CATATG	1 cut(s)	2595
FbaI	TGATCA	2 cut(s)	1309, 2455
FblI	GTMKAC	1 cut(s)	782
Fnu4HI	GCNGC	7 cut(s)	219, 399, 2085, 2103, 2154, 2303, 2709
FokI	GGATG	5 cut(s)	212, 1017, 1951, 2335, 2347
FriOI	GRGCYC	1 cut(s)	2229
Fsp4HI	GCNGC	7 cut(s)	219, 399, 2085, 2103, 2154, 2303, 2709
FspBI	CTAG	6 cut(s)	291, 329, 647, 1208, 1394, 2450
FspI	TGCGCA	1 cut(s)	759
GlaI	GCGC	3 cut(s)	759, 1040, 2121
GluI	GCNGC	7 cut(s)	219, 399, 2085, 2103, 2154, 2303, 2709
GsaI	CCCAGC	1 cut(s)	419
GsuI	CTGGAG	1 cut(s)	2376
HaeIII	GGCC	5 cut(s)	502, 561, 807, 816, 1195
HapII	CCGG	2 cut(s)	1572, 2117
HgaI	GACGC	1 cut(s)	418
HhaI	GCGC	3 cut(s)	760, 1041, 2122
Hin6I	GCGC	3 cut(s)	758, 1039, 2120
HinP1I	GCGC	3 cut(s)	758, 1039, 2120
HindIII	AAGCTT	1 cut(s)	140
HpaII	CCGG	2 cut(s)	1572, 2117
HphI	GGTGA	7 cut(s)	118, 145, 179, 741, 1169, 1536, 1874
Hpy166II	GTNNAC	2 cut(s)	783, 998
Hpy8I	GTNNAC	2 cut(s)	783, 998
HpyAV	CCTTC	8 cut(s)	97, 124, 208, 271, 515, 562, 1452, 2421
HpyCH4III	ACNGT	5 cut(s)	486, 893, 1372, 1792, 2470
HpyCH4IV	ACGT	2 cut(s)	2149, 2575
HpySE526I	ACGT	2 cut(s)	2149, 2575
HspAI	GCGC	3 cut(s)	758, 1039, 2120
KflI	GGGWCCC	1 cut(s)	2443
KroI	GCCGGC	1 cut(s)	2116
KroNI	GCCGGC	1 cut(s)	2118
Ksp22I	TGATCA	2 cut(s)	1309, 2455
LmnI	GCTCC	6 cut(s)	152, 852, 959, 1519, 2563, 2705
Lsp1109I	GCAGC	7 cut(s)	205, 410, 2089, 2096, 2140, 2289, 2695
MabI	ACCWGGT	1 cut(s)	1267
MaeI	CTAG	6 cut(s)	291, 329, 647, 1208, 1394, 2450
MaeII	ACGT	2 cut(s)	2149, 2575
MaeIII	GTNAC	7 cut(s)	41, 133, 167, 716, 1802, 2470, 2499
MfeI	CAATTG	1 cut(s)	2277
MflI	RGATCY	3 cut(s)	361, 1712, 1741
MhlI	GDGCHC	4 cut(s)	688, 1000, 2218, 2229
MlsI	TGGCCA	1 cut(s)	502
MluNI	TGGCCA	1 cut(s)	502
MlyI	GAGTC	5 cut(s)	69, 1295, 1852, 2057, 2467
MmeI	TCCRAC	5 cut(s)	824, 874, 1652, 1774, 1982
Mox20I	TGGCCA	1 cut(s)	502
Mph1103I	ATGCAT	4 cut(s)	12, 616, 1090, 2421
MroNI	GCCGGC	1 cut(s)	2116
MroXI	GAANNNNTTC	2 cut(s)	795, 2624
MscI	TGGCCA	1 cut(s)	502
MseI	TTAA	9 cut(s)	54, 705, 861, 917, 1059, 1169, 1503, 1671, 2696
MslI	CAYNNNNRTG	2 cut(s)	1003, 2468
Msp20I	TGGCCA	1 cut(s)	502
MspA1I	CMGCKG	3 cut(s)	2087, 2102, 2302
MspI	CCGG	2 cut(s)	1572, 2117
MspR9I	CCNGG	7 cut(s)	504, 935, 957, 1269, 1746, 2355, 2489
MunI	CAATTG	1 cut(s)	2277
Mva1269I	GAATGC	2 cut(s)	232, 1134
MvaI	CCWGG	7 cut(s)	504, 935, 957, 1269, 1746, 2355, 2489
NaeI	GCCGGC	1 cut(s)	2118
NdeI	CATATG	1 cut(s)	2595
NgoMIV	GCCGGC	1 cut(s)	2116
NmuCI	GTSAC	5 cut(s)	41, 133, 167, 716, 2470
NsbI	TGCGCA	1 cut(s)	759
NsiI	ATGCAT	4 cut(s)	12, 616, 1090, 2421
NspI	RCATGY	1 cut(s)	14
PaeR7I	CTCGAG	1 cut(s)	810
PagI	TCATGA	2 cut(s)	1201, 1357
PceI	AGGCCT	1 cut(s)	561
PctI	GAATGC	2 cut(s)	232, 1134
PdiI	GCCGGC	1 cut(s)	2118
PdmI	GAANNNNTTC	2 cut(s)	795, 2624
PflFI	GACNNNGTC	3 cut(s)	941, 1370, 2605
PflMI	CCANNNNNTGG	1 cut(s)	180
PfoI	TCCNGGA	2 cut(s)	955, 2353
PinAI	ACCGGT	1 cut(s)	1571
PkrI	GCNGC	7 cut(s)	220, 400, 2086, 2104, 2155, 2304, 2710
PleI	GAGTC	5 cut(s)	68, 1294, 1851, 2057, 2467
PmaCI	CACGTG	1 cut(s)	2150
PmlI	CACGTG	1 cut(s)	2150
PpsI	GAGTC	5 cut(s)	68, 1294, 1851, 2057, 2467
Ppu21I	YACGTR	1 cut(s)	2150
PpuMI	RGGWCCY	2 cut(s)	1271, 2443
Psp124BI	GAGCTC	1 cut(s)	2229
Psp5II	RGGWCCY	2 cut(s)	1271, 2443
Psp6I	CCWGG	7 cut(s)	502, 933, 955, 1267, 1744, 2353, 2487
PspCI	CACGTG	1 cut(s)	2150
PspFI	CCCAGC	1 cut(s)	415
PspGI	CCWGG	7 cut(s)	502, 933, 955, 1267, 1744, 2353, 2487
PspPI	GGNCC	7 cut(s)	806, 1193, 1271, 1889, 2396, 2443, 2690
PspPPI	RGGWCCY	2 cut(s)	1271, 2443
PspXI	VCTCGAGB	1 cut(s)	810
PsuI	RGATCY	3 cut(s)	361, 1712, 1741
PsyI	GACNNNGTC	3 cut(s)	941, 1370, 2605
PvuII	CAGCTG	3 cut(s)	2087, 2102, 2302
RsaI	GTAC	3 cut(s)	890, 1898, 2361
RsaNI	GTAC	3 cut(s)	889, 1897, 2360
RseI	CAYNNNNRTG	2 cut(s)	1003, 2468
SacI	GAGCTC	1 cut(s)	2229
SaqAI	TTAA	9 cut(s)	54, 705, 861, 917, 1059, 1169, 1503, 1671, 2696
SatI	GCNGC	7 cut(s)	219, 399, 2085, 2103, 2154, 2303, 2709
Sau96I	GGNCC	7 cut(s)	806, 1193, 1271, 1889, 2396, 2443, 2690
SchI	GAGTC	5 cut(s)	69, 1295, 1852, 2057, 2467
ScrFI	CCNGG	7 cut(s)	504, 935, 957, 1269, 1746, 2355, 2489
SduI	GDGCHC	4 cut(s)	688, 1000, 2218, 2229
SexAI	ACCWGGT	1 cut(s)	1267
SfcI	CTRYAG	1 cut(s)	589
SfiI	GGCCNNNNNGGCC	1 cut(s)	813
Sfr274I	CTCGAG	1 cut(s)	810
SinI	GGWCC	5 cut(s)	1271, 1889, 2396, 2443, 2690
SlaI	CTCGAG	1 cut(s)	810
SmiMI	CAYNNNNRTG	2 cut(s)	1003, 2468
SmlI	CTYRAG	3 cut(s)	443, 810, 1457
SmoI	CTYRAG	3 cut(s)	443, 810, 1457
SpeI	ACTAGT	1 cut(s)	1207
SseBI	AGGCCT	1 cut(s)	561
SsiI	CCGC	4 cut(s)	992, 2105, 2399, 2651
SspI	AATATT	1 cut(s)	796
SspMI	CTAG	6 cut(s)	291, 329, 647, 1208, 1394, 2450
SstI	GAGCTC	1 cut(s)	2229
StuI	AGGCCT	1 cut(s)	561
StyD4I	CCNGG	7 cut(s)	502, 933, 955, 1267, 1744, 2353, 2487
StyI	CCWWGG	1 cut(s)	407
TaaI	ACNGT	5 cut(s)	486, 893, 1372, 1792, 2470
TaiI	ACGT	2 cut(s)	2152, 2578
TaqI	TCGA	5 cut(s)	811, 1261, 1289, 1799, 2138
TatI	WGTACW	3 cut(s)	888, 1896, 2359
Tru1I	TTAA	9 cut(s)	54, 705, 861, 917, 1059, 1169, 1503, 1671, 2696
Tru9I	TTAA	9 cut(s)	54, 705, 861, 917, 1059, 1169, 1503, 1671, 2696
TscAI	CASTG	6 cut(s)	25, 503, 1698, 2223, 2465, 2692
TseFI	GTSAC	5 cut(s)	41, 133, 167, 716, 2470
TseI	GCWGC	7 cut(s)	218, 398, 2084, 2102, 2153, 2302, 2708
Tsp45I	GTSAC	5 cut(s)	41, 133, 167, 716, 2470
TspDTI	ATGAA	9 cut(s)	227, 534, 1038, 1139, 1218, 1346, 1959, 2633, 2696
TspGWI	ACGGA	1 cut(s)	1646
TspRI	CASTG	6 cut(s)	25, 503, 1698, 2223, 2465, 2692
Tth111I	GACNNNGTC	3 cut(s)	941, 1370, 2605
Van91I	CCANNNNNTGG	1 cut(s)	180
VneI	GTGCAC	1 cut(s)	996
VpaK11BI	GGWCC	5 cut(s)	1271, 1889, 2396, 2443, 2690
XagI	CCTNNNNNAGG	1 cut(s)	566
XapI	RAATTY	4 cut(s)	313, 392, 986, 1126
XbaI	TCTAGA	1 cut(s)	1393
XceI	RCATGY	1 cut(s)	14
XhoI	CTCGAG	1 cut(s)	810
XmiI	GTMKAC	1 cut(s)	782
XmnI	GAANNNNTTC	2 cut(s)	795, 2624
XspI	CTAG	6 cut(s)	291, 329, 647, 1208, 1394, 2450
Zsp2I	ATGCAT	4 cut(s)	12, 616, 1090, 2421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.