Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001667

Physical Location & Seq

Genomic Coordinates Forward (+)

64616889 .. 64617683

Gene Structure 795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG481600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAGGGCACTGCAAGAGCTCATACCTCATTCTAACAAGACAGACAAAGCATCAATGTTAGATGAGGCAATTGAATACTTGAAGTCTCTTCAGCTGCAACTTCAGGTAATGTGGATGGGAGGTGGGATGGCACCGATGATGTTTCCAGGAGTGCAGCACTATATGTCCCGAATGGGAATGGGAATGGGACCGCCTGCCATGCCTTCCATGCACAATCTAATGCAATTACCTCGGGTCCCTCTAGTTGATCAGTGCATGACTGTGACTCCACCAACAAACCAGGCAGTAATGTGCCAAACACCTGTTCTGAATCCTGTTGATTACCATAACCAGATGCAAAATGCCTCTATTCAGGAGCAATACGCACGTCTCATGGGATTCCATCATATGCAGACCATGTCTCAGCCTATGAATATGTTCAGATTCGGCTCTCAGCCTCTTCCGCAAAGTCAAATGATGGCACCAACTGGCATGAACACTGGACCTTTAAGTGGTGGAGCTGCAACTAATGATGCTTTGAGTGGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009642 GO:0009645 GO:0009692 GO:0009693 GO:0009704 GO:0009791 GO:0009889 GO:0009966 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0010244 GO:0010468 GO:0010556 GO:0010600 GO:0010646 GO:0010817 GO:0010928 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043449 GO:0043450 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0046885 GO:0048583 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0080090 GO:0090354 GO:0097159 GO:0104004 GO:0140110 GO:1900673 GO:1900674 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

HLH

Protein Analysis

176

Amino Acids

19.47

Weight (kDa)

7.01

Isoelectric Point (pI)

61.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43010 AT2G43010 AT2G43010 AT2G43010 AT2G43010 AT3G59060 AT3G59060 AT3G59060 AT3G59060
fragaria_vesca	FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940
malus_domestica	MD09G1146000.v1.1 MD17G1132600.v1.1
prunus_persica	Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1
pyrus_communis	pycom09g06630 pycom17g12610
rosa_chinensis	RchiOBHm_Chr2g0152511
rosa_laevigata	RLG00000020642
rosa_multiflora	Rmu_sc0005366.1_g000001 Rmu_sc0027733.1_g000001 Rmu_sc0027737.1_g000001 Rmu_sc0034754.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095640
rosa_rugosa	Rorug02G0434000 Rorug02G0434100 Rorug02G0434200
rosa_samantha	Rh2AG495400 Rh2BG507300 Rh2CG481500 Rh2CG481600 Rh2DG518600
rosa_wichuraiana	Rw2G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	130, 460
AciI	CCGC	2 cut(s)	191, 443
AcuI	CTGAAG	2 cut(s)	74, 86
AfiI	CCNNNNNNNGG	1 cut(s)	491
AgsI	TTSAA	2 cut(s)	74, 82
AjiI	CACGTC	1 cut(s)	368
AjnI	CCWGG	2 cut(s)	145, 279
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	3 cut(s)	19, 94, 500
AluI	AGCT	3 cut(s)	19, 94, 500
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	3 cut(s)	90, 374, 405
Ama87I	CYCGRG	1 cut(s)	231
ApeKI	GCWGC	3 cut(s)	94, 154, 500
Asp700I	GAANNNNTTC	1 cut(s)	416
AspS9I	GGNCC	3 cut(s)	188, 235, 482
AvaI	CYCGRG	1 cut(s)	231
AvaII	GGWCC	3 cut(s)	188, 235, 482
BaeGI	GKGCMC	1 cut(s)	10
BanI	GGYRCC	2 cut(s)	130, 460
BanII	GRGCYC	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	3 cut(s)	81, 166, 487
BccI	CCATC	4 cut(s)	109, 121, 390, 451
BcgI	CGANNNNNNTGC	2 cut(s)	212, 246
BciT130I	CCWGG	2 cut(s)	147, 281
BclI	TGATCA	1 cut(s)	247
BcoDI	GTCTC	3 cut(s)	90, 374, 405
BfaI	CTAG	1 cut(s)	242
BisI	GCNGC	3 cut(s)	95, 155, 501
BlsI	GCNGC	3 cut(s)	96, 156, 502
Bme1390I	CCNGG	2 cut(s)	147, 281
Bme18I	GGWCC	3 cut(s)	188, 235, 482
BmeT110I	CYCGRG	1 cut(s)	231
BmgBI	CACGTC	1 cut(s)	368
BmgT120I	GGNCC	3 cut(s)	188, 235, 482
BmiI	GGNNCC	5 cut(s)	132, 189, 236, 237, 462
BmrFI	CCNGG	2 cut(s)	147, 281
BmsI	GCATC	3 cut(s)	59, 324, 502
BsaJI	CCNNGG	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	250, 280
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse1I	ACTGG	2 cut(s)	472, 484
BseBI	CCWGG	2 cut(s)	147, 281
BseDI	CCNNGG	1 cut(s)	230
BseGI	GGATG	2 cut(s)	120, 132
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMII	CTCAG	2 cut(s)	416, 446
BseNI	ACTGG	2 cut(s)	472, 484
BseSI	GKGCMC	1 cut(s)	10
BseXI	GCAGC	3 cut(s)	81, 166, 487
BsgI	GTGCAG	1 cut(s)	173
BshNI	GGYRCC	2 cut(s)	130, 460
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	231
BslFI	GGGAC	3 cut(s)	151, 201, 221
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	3 cut(s)	90, 374, 405
BsmBI	CGTCTC	1 cut(s)	374
BsmFI	GGGAC	3 cut(s)	151, 201, 221
BsoBI	CYCGRG	1 cut(s)	231
Bsp1286I	GDGCHC	2 cut(s)	10, 21
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	2 cut(s)	191, 443
BspCNI	CTCAG	2 cut(s)	415, 445
BspLI	GGNNCC	5 cut(s)	132, 189, 236, 237, 462
BspT107I	GGYRCC	2 cut(s)	130, 460
BsrI	ACTGG	2 cut(s)	472, 484
BssECI	CCNNGG	1 cut(s)	230
BssMI	GATC	1 cut(s)	247
Bst2UI	CCWGG	2 cut(s)	147, 281
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	2 cut(s)	93, 444
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	2 cut(s)	402, 432
BstF5I	GGATG	2 cut(s)	120, 132
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	3 cut(s)	90, 374, 405
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	3 cut(s)	199, 208, 442
BstNI	CCWGG	2 cut(s)	147, 281
BstSCI	CCNGG	2 cut(s)	145, 279
BstSLI	GKGCMC	1 cut(s)	10
BstV1I	GCAGC	3 cut(s)	81, 166, 487
BtrI	CACGTC	1 cut(s)	368
BtsCI	GGATG	2 cut(s)	120, 132
BtsI	GCAGTG	1 cut(s)	8
BtsIMutI	CAGTG	3 cut(s)	8, 257, 477
Cac8I	GCNNGC	1 cut(s)	195
Cfr13I	GGNCC	3 cut(s)	188, 235, 482
CviAII	CATG	6 cut(s)	199, 208, 256, 373, 397, 472
CviJI	RGCY	6 cut(s)	19, 94, 406, 429, 436, 500
CviKI_1	RGCY	6 cut(s)	19, 94, 406, 429, 436, 500
DdeI	CTNAG	2 cut(s)	402, 432
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
Eam1104I	CTCTTC	2 cut(s)	93, 444
EarI	CTCTTC	2 cut(s)	93, 444
Ecl136II	GAGCTC	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	21
Eco47I	GGWCC	3 cut(s)	188, 235, 482
Eco53kI	GAGCTC	1 cut(s)	19
Eco57I	CTGAAG	2 cut(s)	74, 86
Eco88I	CYCGRG	1 cut(s)	231
EcoICRI	GAGCTC	1 cut(s)	19
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	2 cut(s)	145, 279
EcoT38I	GRGCYC	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	374
FaeI	CATG	6 cut(s)	202, 211, 259, 376, 400, 475
FaqI	GGGAC	3 cut(s)	151, 201, 221
FatI	CATG	6 cut(s)	198, 207, 255, 372, 396, 471
FauNDI	CATATG	1 cut(s)	387
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	3 cut(s)	95, 155, 501
FokI	GGATG	2 cut(s)	127, 139
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	3 cut(s)	95, 155, 501
FspBI	CTAG	1 cut(s)	242
GluI	GCNGC	3 cut(s)	95, 155, 501
Hin1II	CATG	6 cut(s)	202, 211, 259, 376, 400, 475
HinfI	GANTC	4 cut(s)	265, 310, 378, 423
Hpy188I	TCNGA	2 cut(s)	309, 422
Hpy188III	TCNNGA	2 cut(s)	168, 353
HpyAV	CCTTC	1 cut(s)	213
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	9 cut(s)	13, 97, 154, 211, 223, 255, 337, 391, 503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	199, 208, 442
HpyF3I	CTNAG	2 cut(s)	402, 432
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	6 cut(s)	202, 211, 259, 376, 400, 475
KflI	GGGWCCC	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	2 cut(s)	355, 497
Lsp1109I	GCAGC	3 cut(s)	81, 166, 487
LweI	GCATC	3 cut(s)	59, 324, 502
MaeI	CTAG	1 cut(s)	242
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	2 cut(s)	80, 431
MfeI	CAATTG	1 cut(s)	69
MhlI	GDGCHC	2 cut(s)	10, 21
MluCI	AATT	2 cut(s)	69, 224
MlyI	GAGTC	1 cut(s)	259
MnlI	CCTC	7 cut(s)	36, 58, 113, 240, 249, 355, 447
MroXI	GAANNNNTTC	1 cut(s)	416
MseI	TTAA	1 cut(s)	488
MslI	CAYNNNNRTG	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	94
MspR9I	CCNGG	2 cut(s)	147, 281
MunI	CAATTG	1 cut(s)	69
MvaI	CCWGG	2 cut(s)	147, 281
MwoI	GCNNNNNNNGC	3 cut(s)	199, 208, 442
NdeI	CATATG	1 cut(s)	387
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	6 cut(s)	202, 211, 259, 376, 400, 475
NlaIV	GGNNCC	5 cut(s)	132, 189, 236, 237, 462
NmuCI	GTSAC	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	3 cut(s)	310, 378, 423
PflFI	GACNNNGTC	1 cut(s)	397
PfoI	TCCNGGA	1 cut(s)	145
PkrI	GCNGC	3 cut(s)	96, 156, 502
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PpuMI	RGGWCCY	1 cut(s)	235
Psp124BI	GAGCTC	1 cut(s)	21
Psp5II	RGGWCCY	1 cut(s)	235
Psp6I	CCWGG	2 cut(s)	145, 279
PspGI	CCWGG	2 cut(s)	145, 279
PspN4I	GGNNCC	5 cut(s)	132, 189, 236, 237, 462
PspPI	GGNCC	3 cut(s)	188, 235, 482
PspPPI	RGGWCCY	1 cut(s)	235
PsyI	GACNNNGTC	1 cut(s)	397
PvuII	CAGCTG	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	488
SatI	GCNGC	3 cut(s)	95, 155, 501
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	3 cut(s)	188, 235, 482
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	2 cut(s)	147, 281
SduI	GDGCHC	2 cut(s)	10, 21
SfaNI	GCATC	3 cut(s)	59, 324, 502
SinI	GGWCC	3 cut(s)	188, 235, 482
SmiMI	CAYNNNNRTG	1 cut(s)	260
Sse9I	AATT	2 cut(s)	69, 224
SsiI	CCGC	2 cut(s)	191, 443
SspMI	CTAG	1 cut(s)	242
SstI	GAGCTC	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	145, 279
TaaI	ACNGT	1 cut(s)	262
TaiI	ACGT	1 cut(s)	370
TasI	AATT	2 cut(s)	69, 224
TfiI	GAWTC	3 cut(s)	310, 378, 423
Tru1I	TTAA	1 cut(s)	488
Tru9I	TTAA	1 cut(s)	488
TscAI	CASTG	3 cut(s)	15, 257, 484
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	3 cut(s)	94, 154, 500
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	425, 488
TspRI	CASTG	3 cut(s)	15, 257, 484
Tth111I	GACNNNGTC	1 cut(s)	397
VpaK11BI	GGWCC	3 cut(s)	188, 235, 482
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.