Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001667

Physical Location & Seq

Genomic Coordinates Reverse (-)

55521395 .. 55524707

Gene Structure 3313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0434100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3114 bp

ATGGGTAAGCCAAATTCAACTAATACCTTTGATTTCATGTTGAGGGGTCTTAGGAGAAAATGGCAGGTTAAAGGGGGCTGGCAATTAATTGACCTTCCCAATGATTTTTTCATTGTGAAATTTACTCTTGAGGAAGACATGAATTATGCTTTGTGTGGTGGTCCTTGGATTCTTGCGGGCCAAACTTTGATTGTGAAAAAATGGAGACCAGATTTTGATCCCATGACTGAACAAATTGGCAAAATGGCCTTATGGGTTCGAATTTTTGGATTGCCTGTGAAATATTTCAAGGAGTTTACTGTTGCAAAAATTGGAAAAATCCTTGGAGATGTTGTGAAAGTTGATAAGCTTACTGTTGGGCAATCTAGGGGCAAGTTTGCTAGAGTTTGTATTGAGGTTGACCTCAGTAAACCGTTGAGGCCTTATGTTGAAGTTGAATCTTCTGCTTTTCAAGTGGTTTATGAAGGAATATCTCTTATCTGCTTTGAATGTGGCTGTTTTGGGCACCCTAAAGACAAATGTCCTACTCTAAAAGTTGATGCTAATAAAACCTTTGTTGATGAAAGCACCAAGACTCCTGCTCCTAGCTGTGATGTTGCTGATAACTCTGATGTGAATATGTCGCATGAATTACCTGTTAATCCCTGTGATCCTGATGCTGTGCTAAAAGATGACATGGGCCCGTGGATGCTCATGAGTTACAGAAACAAAAAGAAGAGCAATGATTCTGGTGGCAGCAGAAAGAGCAGTAACTCTGGCTCTAGATTCTCTGTGCTGCAAGATGAGAGTGAGCCTAATTTGCCTGATAAGACCATGAATGAAAACTCTGTTGATACAGCTCAGCCGATTGTGAGACTTTGGCAAAGCTTCCAAGAGAAAAAGAAACAAGCCCCTGTGTCCACCAAAGCTAAAAATGCTAGCACTTCTAAAGCCCTTATGAAGAGCACTGCTACTGATGGCATTACTTCACCTCTCAAAGCTGGTCCAAAGTTCACTGACATATCTAGCTTCAAAATCATGGGGAAATCCAGAATTCCTATGAAGGATGTTTCTTACCTTGAAAGCTCAGGTGGATCCAAACTTGAAGTGGTCTACCAAAGGAAAACTAAAAGCCACACTTCCTCTACCACCAAACAGCAGAACCAAATCTTCAAGAGGCTCTCCTTTGAAAACATGGGTTCCACTGCTCCAGGTGATGGCATATCTGCCATTTTTGGTCACTGCCCTCCTGAGGAGCTTGCGACTAACATGGTTGCTACTTCTTCTTCATCCCAAGACTCTGCCACCTTTGTTGAAAAGACTTTTGCTGATAACAGCAAGCTGACAGCTGATGACAACCTACCTTCTCATGATGGGGAGGATCTTGTTAAGATTAATTCTATCGATGTTTTGGCTTTATGTGAACCTCGTGTGCAGTTCCATAAAGCTAGGGACTCTCTTAGAAAACTGGGATTCTATGATTTTAGAGTTGTTGAGGCTGCTGGGTTCTCTGTTACCCTTCCTGGAAATTCTCCTTGGATGCTTACTGTGATCTATGCTAGTCCTAACCACACCTCAAGAGCTTCCCTCTGGAGTTATTTGGATAACCTTAAAGATTCTACTAATCTTCCTGCTTTGTTTATTGGTGATTTTAATGAGCTTGTTTCGGATGCTGACAAAAGTAGTGGCTCTCTAAATGGACGATTTGGTGGTCTTAGGAGTTGGATTAATCGGAATGCTCTAATTGACATGGGGTTCAAGGGCTCATGTTACACTTGGAGTAATAATTCTGTAAAGGAAAGACTTGATAGGGGCTTCTGTTGCTGTGAGTGGAGATCCATGTTTGCTGAAGCTTTTATTCAACACTTGCCCAAGACAAGATCGGATCATTGTCCCATTCTTATGCAGTCATTTTCCAACATTCGCATTAGTAGAAAAGCTATGCCCTTCAGATTTCAGGCCATGTGGTTTTCTCACCCTAATTATTCCGAATTTGTATCCTCTACTTGGAATACTTTATCTGGTGATTTTTCCTCTAAAACTAATGCTCTCTCTGTTGCTCTAGCTCATTGGAACAAAGATGTTTTTGGCCATCTCTTCCAAAGGAAAAGAAGGTTACTGGCTAGGATTGGTGGTATTCAAAAGGCAAGAGACAGGTATGAGAATCCTTTTCTCATTAATCTGGAGGCTGAACTCATTCAAGATTATGAAAATATTAGAGATCAAGAGAATCTTTTTTGGAGGCAAAAGTCTAGAGACAAGTGGCTGCTTGATGGTGACAGGAATACCAGGTTCTTTCATTTGACCACCCTCATTAGAAGAAAGAAAAATAAGATTGAAGGTCTTTTTGATTCTCATGGTGCCTGGTTCACTGATTCTGAGAGCATGAAGAACATCTCTGTTGATTTTTTCACTGATCTATTTTCTTTGCAAAATCCTGAAGATATTAGATTCTTAATTCCCTGGCTCTTCCCTACACTTGATCAGAACAGGCTGGTGAGTTTATGCCGACCTGTTTCCCTCTTAGAAGTTAAAGATGCTTTGTTTGCTATTGGTGGCCTCAAAGCCCCTGGTCATGATGGCTTTCCTGCTATTTTTTTTCAAAACCACTGGCAAACTTGCTCTAATGACATTTTTAAGGTTGTCCAGGAGGCTTTCTGCGCTTGCAAAATTCCTGCTGGGCTTAATCATACCATCATATCTCTCATTCCTAAAGTTGATGGACCTCAACATATGGTCAATTTCAGACCCATTAGCCTTTGTACCACCATTTATAAAGTGATTTCTAAAATTATTGTGGCTAGGATCAGACCCTTGATGAAGATCCTCATTAGCCCTAATCAGGTGAGCTATGTTCCTGGCAGGCACATCTCTGACAATGTCATGATTGCTCAAGAGATGTTGTTTAAGTTCAAAAAGTCTTGTGGCCATAAAGGGTTCTTTGCTTGGAAGGTTGATTTGTCTAAAGCCTATGATAGACTAAGATGGGACTTTATTGAGAGTGTGCTTTGGGAAGTTCAATTTCCTGAGCCTATTGTGAAATTAATCATGCACTGCATTACTTCCACCAGTTTCCAGATTTGCCTTAATGGTGAACTCACTAATTCTTTTAAAGCTCAGAGAGGGATTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009642 GO:0009645 GO:0009692 GO:0009693 GO:0009704 GO:0009791 GO:0009889 GO:0009966 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0010244 GO:0010468 GO:0010556 GO:0010600 GO:0010646 GO:0010817 GO:0010928 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043449 GO:0043450 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0046885 GO:0048583 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0080090 GO:0090354 GO:0097159 GO:0104004 GO:0140110 GO:1900673 GO:1900674 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

HLH

Protein Analysis

1037

Amino Acids

117.4

Weight (kDa)

9.08

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	13 - 75	3.7e-12	Domain of unknown function (DUF4283)
RVT_1	PF00078	896 - 1031	1.1e-12	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43010 AT2G43010 AT2G43010 AT2G43010 AT2G43010 AT3G59060 AT3G59060 AT3G59060 AT3G59060
fragaria_vesca	FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940
malus_domestica	MD09G1146000.v1.1 MD17G1132600.v1.1
prunus_persica	Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1
pyrus_communis	pycom09g06630 pycom17g12610
rosa_chinensis	RchiOBHm_Chr2g0152511
rosa_laevigata	RLG00000020642
rosa_multiflora	Rmu_sc0005366.1_g000001 Rmu_sc0027733.1_g000001 Rmu_sc0027737.1_g000001 Rmu_sc0034754.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095640
rosa_rugosa	Rorug02G0434000 Rorug02G0434100 Rorug02G0434200
rosa_samantha	Rh2AG495400 Rh2BG507300 Rh2CG481500 Rh2CG481600 Rh2DG518600
rosa_wichuraiana	Rw2G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2754
Acc36I	ACCTGC	1 cut(s)	55
AccB1I	GGYRCC	2 cut(s)	504, 2339
AccB7I	CCANNNNNTGG	1 cut(s)	1196
AccI	GTMKAC	1 cut(s)	1092
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	9 cut(s)	212, 644, 1068, 1081, 1368, 1809, 1872, 2792, 2797
AcoI	YGGCCR	2 cut(s)	2068, 2905
AcsI	RAATTY	7 cut(s)	13, 119, 261, 1032, 1507, 1970, 2649
AcuI	CTGAAG	3 cut(s)	1848, 1912, 2439
AfaI	GTAC	1 cut(s)	2743
AfiI	CCNNNNNNNGG	4 cut(s)	1196, 1231, 1986, 2821
AjnI	CCWGG	8 cut(s)	1189, 1501, 2267, 2342, 2441, 2548, 2625, 2836
AjuI	GAANNNNNNNTTGG	4 cut(s)	92, 124, 1498, 1530
Alw21I	GWGCWC	1 cut(s)	947
Alw26I	GTCTC	4 cut(s)	199, 847, 2124, 2229
AlwI	GGATC	9 cut(s)	212, 644, 1068, 1081, 1368, 1809, 1872, 2792, 2797
AoxI	GGCC	8 cut(s)	178, 246, 419, 679, 1938, 2068, 2536, 2905
ApaI	GGGCCC	1 cut(s)	683
ApeKI	GCWGC	4 cut(s)	735, 775, 1478, 2245
ApoI	RAATTY	7 cut(s)	13, 119, 261, 1032, 1507, 1970, 2649
AseI	ATTAAT	5 cut(s)	86, 1374, 1707, 2157, 3023
Asp700I	GAANNNNTTC	2 cut(s)	284, 2175
AspLEI	GCGC	1 cut(s)	2642
AspS9I	GGNCC	6 cut(s)	161, 178, 679, 680, 983, 2702
AsuHPI	GGTGA	9 cut(s)	960, 1205, 1637, 1946, 2015, 2267, 2488, 2836, 3083
AsuII	TTCGAA	1 cut(s)	259
AsuNHI	GCTAGC	1 cut(s)	917
AvaII	GGWCC	3 cut(s)	161, 983, 2702
AxyI	CCTNAGG	1 cut(s)	1230
BaeGI	GKGCMC	2 cut(s)	507, 683
BalI	TGGCCA	2 cut(s)	2070, 2907
BamHI	GGATCC	1 cut(s)	1073
BanI	GGYRCC	2 cut(s)	504, 2339
BanII	GRGCYC	2 cut(s)	683, 1745
BauI	CACGAG	1 cut(s)	1407
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	947
BbvI	GCAGC	4 cut(s)	747, 762, 1465, 2232
BccI	CCATC	9 cut(s)	950, 1190, 1346, 2079, 2246, 2552, 2681, 2693, 2958
BciT130I	CCWGG	8 cut(s)	1191, 1503, 2269, 2344, 2443, 2550, 2627, 2838
BciVI	GTATCC	1 cut(s)	1987
BclI	TGATCA	1 cut(s)	2461
BcoDI	GTCTC	4 cut(s)	199, 847, 2124, 2229
BfuAI	ACCTGC	1 cut(s)	55
BfuI	GTATCC	1 cut(s)	1987
BisI	GCNGC	4 cut(s)	736, 776, 1479, 2246
BlpI	GCTNAGC	1 cut(s)	840
BlsI	GCNGC	4 cut(s)	737, 777, 1480, 2247
Bme1390I	CCNGG	8 cut(s)	1191, 1503, 2269, 2344, 2443, 2550, 2627, 2838
Bme18I	GGWCC	3 cut(s)	161, 983, 2702
BmgT120I	GGNCC	6 cut(s)	161, 178, 679, 680, 983, 2702
BmiI	GGNNCC	5 cut(s)	506, 681, 1075, 1180, 2341
BmrFI	CCNGG	8 cut(s)	1191, 1503, 2269, 2344, 2443, 2550, 2627, 2838
BmrI	ACTGGG	1 cut(s)	1457
BmsI	GCATC	6 cut(s)	529, 646, 678, 1509, 1639, 2506
BmtI	GCTAGC	1 cut(s)	921
BmuI	ACTGGG	1 cut(s)	1457
BoxI	GACNNNNGTC	1 cut(s)	519
BpiI	GAAGAC	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	1551, 1583
BpmI	CTGGAG	3 cut(s)	1173, 1591, 2183
Bpu10I	CCTNAGC	2 cut(s)	1066, 3006
Bpu1102I	GCTNAGC	1 cut(s)	840
Bpu14I	TTCGAA	1 cut(s)	259
BpuEI	CTTGAG	3 cut(s)	149, 1540, 2856
Bsa29I	ATCGAT	1 cut(s)	1383
BsaBI	GATNNNNATC	2 cut(s)	216, 2801
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	6 cut(s)	164, 322, 683, 1514, 2441, 2548
BsaXI	ACNNNNNCTCC	6 cut(s)	318, 348, 559, 565, 589, 595
Bsc4I	CCNNNNNNNGG	4 cut(s)	1196, 1231, 1986, 2821
Bse1I	ACTGG	4 cut(s)	1452, 2103, 2594, 3048
Bse21I	CCTNAGG	1 cut(s)	1230
Bse3DI	GCAATG	1 cut(s)	727
Bse8I	GATNNNNATC	2 cut(s)	216, 2801
BseBI	CCWGG	8 cut(s)	1191, 1503, 2269, 2344, 2443, 2550, 2627, 2838
BseCI	ATCGAT	1 cut(s)	1383
BseDI	CCNNGG	6 cut(s)	164, 322, 683, 1514, 2441, 2548
BseGI	GGATG	5 cut(s)	693, 1051, 1268, 1524, 1654
BseJI	GATNNNNATC	2 cut(s)	216, 2801
BseLI	CCNNNNNNNGG	4 cut(s)	1196, 1231, 1986, 2821
BseMI	GCAATG	1 cut(s)	727
BseMII	CTCAG	7 cut(s)	418, 854, 1080, 1221, 2349, 2997, 3110
BseNI	ACTGG	4 cut(s)	1452, 2103, 2594, 3048
BseRI	GAGGAG	1 cut(s)	1247
BseSI	GKGCMC	2 cut(s)	507, 683
BseXI	GCAGC	4 cut(s)	747, 762, 1465, 2232
BseYI	CCCAGC	2 cut(s)	1481, 2657
BsgI	GTGCAG	1 cut(s)	1433
BshFI	GGCC	8 cut(s)	180, 248, 421, 681, 1940, 2070, 2538, 2907
BshNI	GGYRCC	2 cut(s)	504, 2339
BshVI	ATCGAT	1 cut(s)	1383
BsiHKAI	GWGCWC	1 cut(s)	947
BslFI	GGGAC	3 cut(s)	1445, 1857, 2981
BslI	CCNNNNNNNGG	4 cut(s)	1196, 1231, 1986, 2821
BsmAI	GTCTC	4 cut(s)	199, 847, 2124, 2229
BsmFI	GGGAC	3 cut(s)	1445, 1857, 2981
BsmI	GAATGC	1 cut(s)	1720
BsnI	GGCC	8 cut(s)	180, 248, 421, 681, 1940, 2070, 2538, 2907
Bso31I	GGTCTC	1 cut(s)	199
Bsp119I	TTCGAA	1 cut(s)	259
Bsp120I	GGGCCC	1 cut(s)	679
Bsp1286I	GDGCHC	4 cut(s)	507, 683, 947, 1745
Bsp1720I	GCTNAGC	1 cut(s)	840
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	8 cut(s)	180, 248, 421, 681, 1940, 2070, 2538, 2907
BspCNI	CTCAG	7 cut(s)	417, 853, 1079, 1222, 2350, 2998, 3109
BspDI	ATCGAT	1 cut(s)	1383
BspHI	TCATGA	4 cut(s)	693, 1348, 2554, 2862
BspLI	GGNNCC	5 cut(s)	506, 681, 1075, 1180, 2341
BspMI	ACCTGC	1 cut(s)	55
BspOI	GCTAGC	1 cut(s)	921
BspPI	GGATC	9 cut(s)	212, 644, 1068, 1081, 1368, 1809, 1872, 2792, 2797
BspQI	GCTCTTC	3 cut(s)	710, 935, 2453
BspT104I	TTCGAA	1 cut(s)	259
BspT107I	GGYRCC	2 cut(s)	504, 2339
BspTNI	GGTCTC	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	727
BsrI	ACTGG	4 cut(s)	1452, 2103, 2594, 3048
BssECI	CCNNGG	6 cut(s)	164, 322, 683, 1514, 2441, 2548
BssSI	CACGAG	1 cut(s)	1407
BssT1I	CCWWGG	3 cut(s)	164, 322, 1514
Bst2BI	CACGAG	1 cut(s)	1407
Bst2UI	CCWGG	8 cut(s)	1191, 1503, 2269, 2344, 2443, 2550, 2627, 2838
Bst4CI	ACNGT	4 cut(s)	301, 355, 414, 1528
Bst6I	CTCTTC	4 cut(s)	710, 935, 2081, 2453
BstBI	TTCGAA	1 cut(s)	259
BstC8I	GCNNGC	7 cut(s)	80, 178, 919, 1239, 1319, 2644, 2843
BstDSI	CCRYGG	1 cut(s)	683
BstF5I	GGATG	5 cut(s)	693, 1051, 1268, 1524, 1654
BstHHI	GCGC	1 cut(s)	2642
BstMAI	GTCTC	4 cut(s)	199, 847, 2124, 2229
BstMWI	GCNNNNNNNGC	6 cut(s)	744, 799, 914, 1800, 2525, 2639
BstNI	CCWGG	8 cut(s)	1191, 1503, 2269, 2344, 2443, 2550, 2627, 2838
BstPAI	GACNNNNGTC	1 cut(s)	519
BstSCI	CCNGG	8 cut(s)	1189, 1501, 2267, 2342, 2441, 2548, 2625, 2836
BstSLI	GKGCMC	2 cut(s)	507, 683
BstV1I	GCAGC	4 cut(s)	747, 762, 1465, 2232
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	4 cut(s)	1073, 1360, 1814, 2802
BstYI	RGATCY	4 cut(s)	1073, 1360, 1814, 2802
Bsu15I	ATCGAT	1 cut(s)	1383
Bsu36I	CCTNAGG	1 cut(s)	1230
BsuI	GTATCC	1 cut(s)	1987
BsuRI	GGCC	8 cut(s)	180, 248, 421, 681, 1940, 2070, 2538, 2907
BsuTUI	ATCGAT	1 cut(s)	1383
BtgI	CCRYGG	1 cut(s)	683
BtsCI	GGATG	5 cut(s)	693, 1051, 1268, 1524, 1654
BtsI	GCAGTG	4 cut(s)	945, 1182, 1219, 3031
BtsIMutI	CAGTG	8 cut(s)	945, 993, 1182, 1219, 2349, 2391, 2587, 3031
BveI	ACCTGC	1 cut(s)	55
Cac8I	GCNNGC	7 cut(s)	80, 178, 919, 1239, 1319, 2644, 2843
CciI	TCATGA	4 cut(s)	693, 1348, 2554, 2862
CfoI	GCGC	1 cut(s)	2642
Cfr13I	GGNCC	6 cut(s)	161, 178, 679, 680, 983, 2702
ClaI	ATCGAT	1 cut(s)	1383
CsiI	ACCWGGT	1 cut(s)	2267
Csp6I	GTAC	1 cut(s)	2742
CspCI	CAANNNNNGTGG	4 cut(s)	1273, 1308, 1645, 1680
CviQI	GTAC	1 cut(s)	2742
DraI	TTTAAA	1 cut(s)	3091
EaeI	YGGCCR	2 cut(s)	2068, 2905
Eam1104I	CTCTTC	4 cut(s)	710, 935, 2081, 2453
EarI	CTCTTC	4 cut(s)	710, 935, 2081, 2453
Eco130I	CCWWGG	3 cut(s)	164, 322, 1514
Eco147I	AGGCCT	1 cut(s)	421
Eco24I	GRGCYC	2 cut(s)	683, 1745
Eco31I	GGTCTC	1 cut(s)	199
Eco47I	GGWCC	3 cut(s)	161, 983, 2702
Eco57I	CTGAAG	3 cut(s)	1848, 1912, 2439
Eco81I	CCTNAGG	1 cut(s)	1230
EcoRI	GAATTC	1 cut(s)	1032
EcoRII	CCWGG	8 cut(s)	1189, 1501, 2267, 2342, 2441, 2548, 2625, 2836
EcoT14I	CCWWGG	3 cut(s)	164, 322, 1514
EcoT38I	GRGCYC	2 cut(s)	683, 1745
ErhI	CCWWGG	3 cut(s)	164, 322, 1514
FalI	AAGNNNNNCTT	4 cut(s)	1102, 1134, 2196, 2228
FaqI	GGGAC	3 cut(s)	1445, 1857, 2981
FauI	CCCGC	1 cut(s)	169
FauNDI	CATATG	1 cut(s)	2712
FbaI	TGATCA	1 cut(s)	2461
FblI	GTMKAC	1 cut(s)	1092
Fnu4HI	GCNGC	4 cut(s)	736, 776, 1479, 2246
FokI	GGATG	5 cut(s)	700, 1058, 1255, 1531, 1661
FriOI	GRGCYC	2 cut(s)	683, 1745
Fsp4HI	GCNGC	4 cut(s)	736, 776, 1479, 2246
GlaI	GCGC	1 cut(s)	2641
GluI	GCNGC	4 cut(s)	736, 776, 1479, 2246
GsaI	CCCAGC	2 cut(s)	1485, 2661
GsuI	CTGGAG	3 cut(s)	1173, 1591, 2183
HaeIII	GGCC	8 cut(s)	180, 248, 421, 681, 1940, 2070, 2538, 2907
HhaI	GCGC	1 cut(s)	2642
Hin6I	GCGC	1 cut(s)	2640
HinP1I	GCGC	1 cut(s)	2640
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HindIII	AAGCTT	3 cut(s)	347, 865, 1830
HphI	GGTGA	9 cut(s)	960, 1205, 1637, 1946, 2015, 2267, 2488, 2836, 3083
Hpy166II	GTNNAC	9 cut(s)	297, 400, 410, 900, 993, 1093, 1403, 2349, 3074
Hpy8I	GTNNAC	9 cut(s)	297, 400, 410, 900, 993, 1093, 1403, 2349, 3074
HpyAV	CCTTC	9 cut(s)	104, 458, 1036, 1353, 1508, 1936, 2085, 2312, 2923
HpyCH4III	ACNGT	4 cut(s)	301, 355, 414, 1528
HpyCH4V	TGCA	8 cut(s)	305, 778, 1414, 1885, 2410, 2646, 3031, 3036
HpyF10VI	GCNNNNNNNGC	6 cut(s)	744, 799, 914, 1800, 2525, 2639
HspAI	GCGC	1 cut(s)	2640
Ksp22I	TGATCA	1 cut(s)	2461
LguI	GCTCTTC	3 cut(s)	710, 935, 2453
LmnI	GCTCC	3 cut(s)	586, 1192, 1234
Lsp1109I	GCAGC	4 cut(s)	747, 762, 1465, 2232
LweI	GCATC	6 cut(s)	529, 646, 678, 1509, 1639, 2506
MabI	ACCWGGT	1 cut(s)	2267
MaeIII	GTNAC	7 cut(s)	698, 749, 1217, 1492, 1748, 2094, 2255
MflI	RGATCY	4 cut(s)	1073, 1360, 1814, 2802
MhlI	GDGCHC	4 cut(s)	507, 683, 947, 1745
MlsI	TGGCCA	2 cut(s)	2070, 2907
MluNI	TGGCCA	2 cut(s)	2070, 2907
MlyI	GAGTC	3 cut(s)	568, 1271, 1427
MmeI	TCCRAC	2 cut(s)	1682, 1920
Mox20I	TGGCCA	2 cut(s)	2070, 2907
MroXI	GAANNNNTTC	2 cut(s)	284, 2175
MscI	TGGCCA	2 cut(s)	2070, 2907
MslI	CAYNNNNRTG	1 cut(s)	1880
Msp20I	TGGCCA	2 cut(s)	2070, 2907
MspA1I	CMGCKG	1 cut(s)	1328
MspR9I	CCNGG	8 cut(s)	1191, 1503, 2269, 2344, 2443, 2550, 2627, 2838
Mva1269I	GAATGC	1 cut(s)	1720
MvaI	CCWGG	8 cut(s)	1191, 1503, 2269, 2344, 2443, 2550, 2627, 2838
MwoI	GCNNNNNNNGC	6 cut(s)	744, 799, 914, 1800, 2525, 2639
NdeI	CATATG	1 cut(s)	2712
NheI	GCTAGC	1 cut(s)	917
NlaIV	GGNNCC	5 cut(s)	506, 681, 1075, 1180, 2341
NmuCI	GTSAC	2 cut(s)	1217, 2255
NspV	TTCGAA	1 cut(s)	259
PagI	TCATGA	4 cut(s)	693, 1348, 2554, 2862
PceI	AGGCCT	1 cut(s)	421
PciSI	GCTCTTC	3 cut(s)	710, 935, 2453
PctI	GAATGC	1 cut(s)	1720
PdmI	GAANNNNTTC	2 cut(s)	284, 2175
PflFI	GACNNNGTC	1 cut(s)	2858
PflMI	CCANNNNNTGG	1 cut(s)	1196
PfoI	TCCNGGA	2 cut(s)	1501, 2625
PkrI	GCNGC	4 cut(s)	737, 777, 1480, 2247
PleI	GAGTC	3 cut(s)	568, 1271, 1427
PpsI	GAGTC	3 cut(s)	568, 1271, 1427
PshAI	GACNNNNGTC	1 cut(s)	519
PshBI	ATTAAT	5 cut(s)	86, 1374, 1707, 2157, 3023
PsiI	TTATAA	1 cut(s)	2754
Psp6I	CCWGG	8 cut(s)	1189, 1501, 2267, 2342, 2441, 2548, 2625, 2836
PspFI	CCCAGC	2 cut(s)	1481, 2657
PspGI	CCWGG	8 cut(s)	1189, 1501, 2267, 2342, 2441, 2548, 2625, 2836
PspN4I	GGNNCC	5 cut(s)	506, 681, 1075, 1180, 2341
PspOMI	GGGCCC	1 cut(s)	679
PspPI	GGNCC	6 cut(s)	161, 178, 679, 680, 983, 2702
PsuI	RGATCY	4 cut(s)	1073, 1360, 1814, 2802
PsyI	GACNNNGTC	1 cut(s)	2858
PvuII	CAGCTG	1 cut(s)	1328
RsaI	GTAC	1 cut(s)	2743
RsaNI	GTAC	1 cut(s)	2742
RseI	CAYNNNNRTG	1 cut(s)	1880
SapI	GCTCTTC	3 cut(s)	710, 935, 2453
SatI	GCNGC	4 cut(s)	736, 776, 1479, 2246
Sau96I	GGNCC	6 cut(s)	161, 178, 679, 680, 983, 2702
SchI	GAGTC	3 cut(s)	568, 1271, 1427
ScrFI	CCNGG	8 cut(s)	1191, 1503, 2269, 2344, 2443, 2550, 2627, 2838
SduI	GDGCHC	4 cut(s)	507, 683, 947, 1745
SexAI	ACCWGGT	1 cut(s)	2267
SfaNI	GCATC	6 cut(s)	529, 646, 678, 1509, 1639, 2506
SfuI	TTCGAA	1 cut(s)	259
SinI	GGWCC	3 cut(s)	161, 983, 2702
SmiMI	CAYNNNNRTG	1 cut(s)	1880
SmlI	CTYRAG	3 cut(s)	128, 1555, 2871
SmoI	CTYRAG	3 cut(s)	128, 1555, 2871
SseBI	AGGCCT	1 cut(s)	421
SsiI	CCGC	1 cut(s)	176
SspI	AATATT	2 cut(s)	284, 2194
StuI	AGGCCT	1 cut(s)	421
StyD4I	CCNGG	8 cut(s)	1189, 1501, 2267, 2342, 2441, 2548, 2625, 2836
StyI	CCWWGG	3 cut(s)	164, 322, 1514
TaaI	ACNGT	4 cut(s)	301, 355, 414, 1528
TaqI	TCGA	2 cut(s)	259, 1383
TscAI	CASTG	8 cut(s)	952, 1000, 1189, 1226, 2356, 2398, 2594, 3038
TseFI	GTSAC	2 cut(s)	1217, 2255
TseI	GCWGC	4 cut(s)	735, 775, 1478, 2245
Tsp45I	GTSAC	2 cut(s)	1217, 2255
TspRI	CASTG	8 cut(s)	952, 1000, 1189, 1226, 2356, 2398, 2594, 3038
Tth111I	GACNNNGTC	1 cut(s)	2858
Van91I	CCANNNNNTGG	1 cut(s)	1196
VpaK11BI	GGWCC	3 cut(s)	161, 983, 2702
VspI	ATTAAT	5 cut(s)	86, 1374, 1707, 2157, 3023
XapI	RAATTY	7 cut(s)	13, 119, 261, 1032, 1507, 1970, 2649
XbaI	TCTAGA	2 cut(s)	761, 2231
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1084
XmiI	GTMKAC	1 cut(s)	1092
XmnI	GAANNNNTTC	2 cut(s)	284, 2175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.