Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001667

Physical Location & Seq

Genomic Coordinates Forward (+)

55525599 .. 55529693

Gene Structure 4095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0434200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGTTTGGCTTTTGTTGTAGAAGATTGCAATTACTAGTTCCAAGCTGTAGCAGCATTTCTCTTGATTCTTCAGTGACCCATTTTCAAAAGGCATCACCTTTTAGCAGATCATATGCATCATTATTAGGATCTGCAATAGATGATAAACCCCAAGGTCACTCCTTTACAGTTTCATACCTTATAAACTCATGTGGGTTATCCCCAGAAGTGGCTCTCTCTCTGTCCAAGAAGCAGAAGAGGGTACAGTTTGAATCCCCAGAAAAACCAGACTCGGTTATTAAGCTTCTAAAACACTATGGACTTAGTGATACCCATGTCTCCAATATTGTTAAGAAACGCCCAGACCTGCTCTTAGCCAATGCTGAAAAGATCCTTTTGCCCAAACTTGAGTTTTTCGCTTCTATTGGCCTTTCGGGCACTGACCTTGCTCAGGTTGTCTCCGGCAACCCAAATGTTTTGAACTTGAGCTTAGAGAGAAATCTGAGACCCTGTTATGATATGATCAAGAGTCTACCTATCCCGGACAAAATGGTGGGTCGTGTCTTTTCGAAATTGTATCAGGGATTCATGGTCAGCGCAAATGTACTAAGCAATATTGCCCCCAATATTGCATTTCTGAAGGAAGTTCAAGTGCCAGAATCCTCGGTCAATCTGTGTCTGAGCAATACCCTTTTTGCAGTGTCACGGGAAAACCAAAAGTTTAAGGAAAACGTGGAGAAAGTCATCAGTATGGGAATAAGCCCGTCTTCTGCAACCTTTTTGAAAGCCTTGTATGTGATTTCTGTGATGGATCACTCGAAATGGGTACAAAGGATGGAATCATATAAGACGACATTCGGTTGGACTGAAGATGTTTTCTTGTTGGCATTTAGAAAAAATCCATTGTTTATGGCATTGTTAGAGAAGAAAGTTTTAAGTAAAGTTGATTTTCTTGTCAAGAGAATGGGTTGGCAGCCTGCATTTGTAGCTAAATATCCTAGTGTTCTAACATTTAGTTTGGAGAAGTGGATTATACCTAGGTGCAAAGTTATTAGAGTGCTTCTCTTGAAGGGCTTAATAATAAGGGGAGAAGATTCTTTGATTGGTACTGCCCTGTTGGCTGGTAAGAATTACTTCTTGGATAGGTTTGTGATCAGATATCAGAAGCAAGTACCTGAGTTATTGAATATCTTTCAAGGGAAAATGAGTCTTGCGGACGTTGGCTTAGGGTTTGAGGAAACAGAACTTGCTCTCTCTCTGTCCAAGAAGCTGTGGGTACAGTTTGAATCCCCAGAAAAACCAGACTCTGTTATTAAGCTTCTGAAACACTATGGACTCAATGGTACCCATGTCTCTGAAATCGCTAAGAAACGCCCAACCCTGTTTTTATTCAAAGCTGAGAAGACCCTTCTGCCCAAGCTTGAGTTTTTCAGTTCTATTGGCATATCAGGCACTGCCCTTGCTAGGCTCCTTTGTATGAACCCAAGAATCTTGACAGTAAGCTTAGAGAGAAGTCTCAGACCTTGTTATGATCTCACCAAAACTCTACGTATCCCTGATGAAAAGCTCGCTTATTTCTTTAGTGACTTCAGGCGGATTACTTTCACAAGATTGTGCTTTGTTGCTCGCAATGTTCAAGTTCTGAGAGCACATGGTGTGCCAGAATCCTCATTTCCTCTGTGGGTGCCCGTTAATTTTAATGCACTGTCCTTTGACTCTGAGAAGGTCAGAGAAAATATTGACAAGGTCATCAGCATGGGATTCCGCCCTTCATCTGCCACATTCATGAGAGCACTGTTTGTGATATCAGTGATGGATGCATCAAAATGGGAACAGAGGATGGAATTTTATAGAAAGTGGGGTCTGACTGAAGATGATGTGTTGTTGGCATTTAGAAAGAGTCCCTTGTTTATGTCCTTCAGTGAGAAGATTATATCCAGTAAAATGAATTTTTATGTGAAGACAATGGGTTGGCAGCCCTCAGATGTGGCTGGATGTCCTGATGTTCTAACTTATAGTTTGGAGAAGCGAATCATACCTAGGTGTTCGGTTATCAGACTTCTCCAGTTAGAGGGCTTAATCGCAAAGGAAGATGTATCTATAAGTACTATTCTGAAGACAAGCGAGAAGTGGTTCTTGGAAAGGTTTGTGATCAAATATCAAGAGCAAGTACCTGAACTGCTGACATCTTACAAGGAAAAATCAGTCTTGCAAAATTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009642 GO:0009645 GO:0009692 GO:0009693 GO:0009704 GO:0009791 GO:0009889 GO:0009966 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0010244 GO:0010468 GO:0010556 GO:0010600 GO:0010646 GO:0010817 GO:0010928 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043449 GO:0043450 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0046885 GO:0048583 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0080090 GO:0090354 GO:0097159 GO:0104004 GO:0140110 GO:1900673 GO:1900674 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

HLH

Protein Analysis

734

Amino Acids

83.36

Weight (kDa)

9.52

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	93 - 170	6.4e-12	mTERF
mTERF	PF02536	158 - 353	1.2e-17	mTERF
mTERF	PF02536	431 - 549	3.7e-12	mTERF
mTERF	PF02536	564 - 705	1.2e-19	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43010 AT2G43010 AT2G43010 AT2G43010 AT2G43010 AT3G59060 AT3G59060 AT3G59060 AT3G59060
fragaria_vesca	FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940
malus_domestica	MD09G1146000.v1.1 MD17G1132600.v1.1
prunus_persica	Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1
pyrus_communis	pycom09g06630 pycom17g12610
rosa_chinensis	RchiOBHm_Chr2g0152511
rosa_laevigata	RLG00000020642
rosa_multiflora	Rmu_sc0005366.1_g000001 Rmu_sc0027733.1_g000001 Rmu_sc0027737.1_g000001 Rmu_sc0034754.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095640
rosa_rugosa	Rorug02G0434000 Rorug02G0434100 Rorug02G0434200
rosa_samantha	Rh2AG495400 Rh2BG507300 Rh2CG481500 Rh2CG481600 Rh2DG518600
rosa_wichuraiana	Rw2G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	182
Acc36I	ACCTGC	1 cut(s)	354
Acc65I	GGTACC	1 cut(s)	1322
AccB1I	GGYRCC	2 cut(s)	1322, 1663
AccI	GTMKAC	1 cut(s)	511
AciI	CCGC	3 cut(s)	1193, 1573, 1744
AclWI	GGATC	3 cut(s)	136, 364, 798
AcsI	RAATTY	3 cut(s)	1823, 1927, 2194
AcuI	CTGAAG	7 cut(s)	54, 638, 867, 1552, 1869, 1882, 2114
AdeI	CACNNNGTG	1 cut(s)	1634
AfaI	GTAC	9 cut(s)	243, 585, 807, 1087, 1152, 1257, 1324, 2086, 2151
AfiI	CCNNNNNNNGG	4 cut(s)	208, 430, 1443, 2050
AhlI	ACTAGT	1 cut(s)	34
AjuI	GAANNNNNNNTTGG	4 cut(s)	1100, 1132, 2099, 2131
Alw21I	GWGCWC	2 cut(s)	1630, 1774
Alw26I	GTCTC	5 cut(s)	322, 442, 478, 1336, 1499
AlwI	GGATC	3 cut(s)	136, 364, 798
AlwNI	CAGNNNCTG	2 cut(s)	1286, 1433
AoxI	GGCC	1 cut(s)	406
ApeKI	GCWGC	3 cut(s)	51, 952, 1954
ApoI	RAATTY	3 cut(s)	1823, 1927, 2194
Asp700I	GAANNNNTTC	2 cut(s)	1112, 2111
Asp718I	GGTACC	1 cut(s)	1322
AspA2I	CCTAGG	2 cut(s)	1016, 2018
AspLEI	GCGC	1 cut(s)	578
AsuC2I	CCSGG	1 cut(s)	521
AsuHPI	GGTGA	2 cut(s)	87, 1507
AsuII	TTCGAA	1 cut(s)	548
AvrII	CCTAGG	2 cut(s)	1016, 2018
BaeGI	GKGCMC	2 cut(s)	419, 1668
BaeI	ACNNNNGTAYC	4 cut(s)	300, 333, 1314, 1347
BanI	GGYRCC	2 cut(s)	1322, 1663
BbsI	GAAGAC	4 cut(s)	738, 1388, 1946, 2102
Bbv12I	GWGCWC	2 cut(s)	1630, 1774
BbvI	GCAGC	3 cut(s)	63, 964, 1966
BccI	CCATC	4 cut(s)	781, 808, 1786, 1813
BciVI	GTATCC	1 cut(s)	1541
BclI	TGATCA	3 cut(s)	501, 1131, 2130
BcnI	CCSGG	1 cut(s)	521
BcoDI	GTCTC	5 cut(s)	322, 442, 478, 1336, 1499
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	5 cut(s)	35, 978, 1017, 1443, 2019
BfmI	CTRYAG	1 cut(s)	46
BfuAI	ACCTGC	1 cut(s)	354
BfuI	GTATCC	1 cut(s)	1541
BglI	GCCNNNNNGGC	2 cut(s)	414, 1097
BisI	GCNGC	3 cut(s)	52, 953, 1955
BlnI	CCTAGG	2 cut(s)	1016, 2018
BlsI	GCNGC	3 cut(s)	53, 954, 1956
BmcAI	AGTACT	1 cut(s)	2086
Bme1390I	CCNGG	1 cut(s)	521
BmiI	GGNNCC	3 cut(s)	1324, 1448, 1665
BmrFI	CCNGG	1 cut(s)	521
BmsI	GCATC	4 cut(s)	101, 125, 1786, 1808
BpiI	GAAGAC	4 cut(s)	738, 1388, 1946, 2102
BplI	GAGNNNNNCTC	2 cut(s)	1026, 1058
BpmI	CTGGAG	1 cut(s)	2027
Bpu10I	CCTNAGC	2 cut(s)	429, 1204
Bpu14I	TTCGAA	1 cut(s)	548
BpuEI	CTTGAG	3 cut(s)	407, 484, 1421
BpuMI	CCSGG	1 cut(s)	521
BsaAI	YACGTR	1 cut(s)	1529
BsaI	GGTCTC	1 cut(s)	478
BsaJI	CCNNGG	4 cut(s)	151, 642, 1016, 2018
Bsc4I	CCNNNNNNNGG	4 cut(s)	208, 430, 1443, 2050
Bse1I	ACTGG	2 cut(s)	1917, 2044
Bse3DI	GCAATG	1 cut(s)	1615
BseDI	CCNNGG	4 cut(s)	151, 642, 1016, 2018
BseGI	GGATG	4 cut(s)	819, 1801, 1824, 1979
BseLI	CCNNNNNNNGG	4 cut(s)	208, 430, 1443, 2050
BseMI	GCAATG	1 cut(s)	1615
BseMII	CTCAG	9 cut(s)	443, 473, 650, 1146, 1368, 1510, 1613, 1689, 1974
BseNI	ACTGG	2 cut(s)	1917, 2044
BseSI	GKGCMC	2 cut(s)	419, 1668
BseXI	GCAGC	3 cut(s)	63, 964, 1966
BshFI	GGCC	1 cut(s)	408
BshNI	GGYRCC	2 cut(s)	1322, 1663
BsiHKAI	GWGCWC	2 cut(s)	1630, 1774
BsiSI	CCGG	2 cut(s)	441, 521
BslFI	GGGAC	1 cut(s)	1866
BslI	CCNNNNNNNGG	4 cut(s)	208, 430, 1443, 2050
BsmAI	GTCTC	5 cut(s)	322, 442, 478, 1336, 1499
BsmFI	GGGAC	1 cut(s)	1866
BsnI	GGCC	1 cut(s)	408
Bso31I	GGTCTC	1 cut(s)	478
Bsp119I	TTCGAA	1 cut(s)	548
Bsp1286I	GDGCHC	4 cut(s)	419, 1630, 1668, 1774
Bsp143I	GATC	8 cut(s)	107, 128, 369, 501, 790, 1131, 1510, 2130
BspACI	CCGC	3 cut(s)	1193, 1573, 1744
BspANI	GGCC	1 cut(s)	408
BspCNI	CTCAG	9 cut(s)	442, 474, 651, 1147, 1369, 1509, 1614, 1690, 1973
BspHI	TCATGA	1 cut(s)	1764
BspLI	GGNNCC	3 cut(s)	1324, 1448, 1665
BspMI	ACCTGC	1 cut(s)	354
BspPI	GGATC	3 cut(s)	136, 364, 798
BspT104I	TTCGAA	1 cut(s)	548
BspT107I	GGYRCC	2 cut(s)	1322, 1663
BspTNI	GGTCTC	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	1615
BsrI	ACTGG	2 cut(s)	1917, 2044
BssECI	CCNNGG	4 cut(s)	151, 642, 1016, 2018
BssMI	GATC	8 cut(s)	107, 128, 369, 501, 790, 1131, 1510, 2130
BssT1I	CCWWGG	3 cut(s)	151, 1016, 2018
Bst4CI	ACNGT	6 cut(s)	169, 246, 1260, 1477, 1686, 1776
Bst6I	CTCTTC	1 cut(s)	230
BstBAI	YACGTR	1 cut(s)	1529
BstBI	TTCGAA	1 cut(s)	548
BstC8I	GCNNGC	3 cut(s)	957, 1548, 1606
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	4 cut(s)	819, 1801, 1824, 1979
BstHHI	GCGC	1 cut(s)	578
BstKTI	GATC	8 cut(s)	110, 131, 372, 504, 793, 1134, 1513, 2133
BstMAI	GTCTC	5 cut(s)	322, 442, 478, 1336, 1499
BstMBI	GATC	8 cut(s)	107, 128, 369, 501, 790, 1131, 1510, 2130
BstMWI	GCNNNNNNNGC	5 cut(s)	51, 414, 965, 1097, 1428
BstSCI	CCNGG	1 cut(s)	519
BstSFI	CTRYAG	1 cut(s)	46
BstSLI	GKGCMC	2 cut(s)	419, 1668
BstSNI	TACGTA	1 cut(s)	1529
BstV1I	GCAGC	3 cut(s)	63, 964, 1966
BstV2I	GAAGAC	4 cut(s)	738, 1388, 1946, 2102
BstX2I	RGATCY	2 cut(s)	128, 369
BstYI	RGATCY	2 cut(s)	128, 369
BsuI	GTATCC	1 cut(s)	1541
BsuRI	GGCC	1 cut(s)	408
BtsCI	GGATG	4 cut(s)	819, 1801, 1824, 1979
BtsI	GCAGTG	2 cut(s)	684, 1431
BtsIMutI	CAGTG	8 cut(s)	78, 417, 684, 1431, 1682, 1772, 1794, 1906
BveI	ACCTGC	1 cut(s)	354
Cac8I	GCNNGC	3 cut(s)	957, 1548, 1606
CaiI	CAGNNNCTG	2 cut(s)	1286, 1433
CciI	TCATGA	1 cut(s)	1764
CfoI	GCGC	1 cut(s)	578
Csp6I	GTAC	9 cut(s)	242, 584, 806, 1086, 1151, 1256, 1323, 2085, 2150
CviAII	CATG	7 cut(s)	189, 314, 568, 1328, 1631, 1735, 1765
CviQI	GTAC	9 cut(s)	242, 584, 806, 1086, 1151, 1256, 1323, 2085, 2150
DpnI	GATC	8 cut(s)	109, 130, 371, 503, 792, 1133, 1512, 2132
DpnII	GATC	8 cut(s)	107, 128, 369, 501, 790, 1131, 1510, 2130
DraIII	CACNNNGTG	1 cut(s)	1634
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
EciI	GGCGGA	2 cut(s)	1588, 1733
Eco105I	TACGTA	1 cut(s)	1529
Eco130I	CCWWGG	3 cut(s)	151, 1016, 2018
Eco31I	GGTCTC	1 cut(s)	478
Eco32I	GATATC	2 cut(s)	1139, 1785
Eco57I	CTGAAG	7 cut(s)	54, 638, 867, 1552, 1869, 1882, 2114
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoRV	GATATC	2 cut(s)	1139, 1785
EcoT14I	CCWWGG	3 cut(s)	151, 1016, 2018
EcoT22I	ATGCAT	2 cut(s)	118, 1801
ErhI	CCWWGG	3 cut(s)	151, 1016, 2018
FaeI	CATG	7 cut(s)	192, 317, 571, 1331, 1634, 1738, 1768
FalI	AAGNNNNNCTT	8 cut(s)	730, 762, 1097, 1129, 1868, 1900, 2099, 2131
FaqI	GGGAC	1 cut(s)	1866
FatI	CATG	7 cut(s)	188, 313, 567, 1327, 1630, 1734, 1764
FauNDI	CATATG	1 cut(s)	112
FbaI	TGATCA	3 cut(s)	501, 1131, 2130
FblI	GTMKAC	1 cut(s)	511
Fnu4HI	GCNGC	3 cut(s)	52, 953, 1955
FokI	GGATG	4 cut(s)	826, 1808, 1831, 1986
Fsp4HI	GCNGC	3 cut(s)	52, 953, 1955
FspBI	CTAG	5 cut(s)	35, 978, 1017, 1443, 2019
GlaI	GCGC	1 cut(s)	577
GluI	GCNGC	3 cut(s)	52, 953, 1955
GsuI	CTGGAG	1 cut(s)	2027
HaeIII	GGCC	1 cut(s)	408
HapII	CCGG	2 cut(s)	441, 521
HhaI	GCGC	1 cut(s)	578
Hin1II	CATG	7 cut(s)	192, 317, 571, 1331, 1634, 1738, 1768
Hin6I	GCGC	1 cut(s)	576
HinP1I	GCGC	1 cut(s)	576
HindIII	AAGCTT	4 cut(s)	281, 1295, 1397, 1480
HpaII	CCGG	2 cut(s)	441, 521
HphI	GGTGA	2 cut(s)	87, 1507
Hpy166II	GTNNAC	1 cut(s)	512
Hpy188III	TCNNGA	8 cut(s)	62, 505, 937, 1045, 1471, 1765, 1979, 2141
Hpy8I	GTNNAC	1 cut(s)	512
HpyAV	CCTTC	6 cut(s)	613, 1042, 1397, 1696, 1758, 1906
HpyCH4III	ACNGT	6 cut(s)	169, 246, 1260, 1477, 1686, 1776
HpyCH4IV	ACGT	3 cut(s)	711, 1197, 1528
HpyF10VI	GCNNNNNNNGC	5 cut(s)	51, 414, 965, 1097, 1428
HpySE526I	ACGT	3 cut(s)	711, 1197, 1528
Hsp92II	CATG	7 cut(s)	192, 317, 571, 1331, 1634, 1738, 1768
HspAI	GCGC	1 cut(s)	576
KpnI	GGTACC	1 cut(s)	1326
Ksp22I	TGATCA	3 cut(s)	501, 1131, 2130
Kzo9I	GATC	8 cut(s)	107, 128, 369, 501, 790, 1131, 1510, 2130
LmnI	GCTCC	1 cut(s)	1452
Lsp1109I	GCAGC	3 cut(s)	63, 964, 1966
LweI	GCATC	4 cut(s)	101, 125, 1786, 1808
MaeI	CTAG	5 cut(s)	35, 978, 1017, 1443, 2019
MaeII	ACGT	3 cut(s)	711, 1197, 1528
MaeIII	GTNAC	4 cut(s)	73, 155, 681, 1562
MalI	GATC	8 cut(s)	109, 130, 371, 503, 792, 1133, 1512, 2132
MboI	GATC	8 cut(s)	107, 128, 369, 501, 790, 1131, 1510, 2130
MflI	RGATCY	2 cut(s)	128, 369
MhlI	GDGCHC	4 cut(s)	419, 1630, 1668, 1774
MluCI	AATT	7 cut(s)	29, 551, 1108, 1672, 1823, 1927, 2194
MlyI	GAGTC	7 cut(s)	263, 517, 1195, 1277, 1308, 1688, 1888
MmeI	TCCRAC	1 cut(s)	821
MnlI	CCTC	8 cut(s)	231, 652, 1207, 1657, 1665, 1809, 1969, 2044
Mph1103I	ATGCAT	2 cut(s)	118, 1801
MroXI	GAANNNNTTC	2 cut(s)	1112, 2111
MseI	TTAA	9 cut(s)	279, 330, 702, 914, 1055, 1293, 1671, 1677, 2057
MslI	CAYNNNNRTG	4 cut(s)	728, 1733, 1763, 1804
MspI	CCGG	2 cut(s)	441, 521
MspR9I	CCNGG	1 cut(s)	521
MwoI	GCNNNNNNNGC	5 cut(s)	51, 414, 965, 1097, 1428
NciI	CCSGG	1 cut(s)	521
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	8 cut(s)	107, 128, 369, 501, 790, 1131, 1510, 2130
NlaIII	CATG	7 cut(s)	192, 317, 571, 1331, 1634, 1738, 1768
NlaIV	GGNNCC	3 cut(s)	1324, 1448, 1665
NmuCI	GTSAC	4 cut(s)	73, 155, 681, 1562
NsiI	ATGCAT	2 cut(s)	118, 1801
NspV	TTCGAA	1 cut(s)	548
PagI	TCATGA	1 cut(s)	1764
PdmI	GAANNNNTTC	2 cut(s)	1112, 2111
PflFI	GACNNNGTC	1 cut(s)	1724
PfoI	TCCNGGA	1 cut(s)	519
PkrI	GCNGC	3 cut(s)	53, 954, 1956
PleI	GAGTC	7 cut(s)	263, 516, 1194, 1277, 1308, 1688, 1887
PpsI	GAGTC	7 cut(s)	263, 516, 1194, 1277, 1308, 1688, 1887
Ppu21I	YACGTR	1 cut(s)	1529
PsiI	TTATAA	1 cut(s)	182
PspN4I	GGNNCC	3 cut(s)	1324, 1448, 1665
PstNI	CAGNNNCTG	2 cut(s)	1286, 1433
PsuI	RGATCY	2 cut(s)	128, 369
PsyI	GACNNNGTC	1 cut(s)	1724
RsaI	GTAC	9 cut(s)	243, 585, 807, 1087, 1152, 1257, 1324, 2086, 2151
RsaNI	GTAC	9 cut(s)	242, 584, 806, 1086, 1151, 1256, 1323, 2085, 2150
RseI	CAYNNNNRTG	4 cut(s)	728, 1733, 1763, 1804
SaqAI	TTAA	9 cut(s)	279, 330, 702, 914, 1055, 1293, 1671, 1677, 2057
SatI	GCNGC	3 cut(s)	52, 953, 1955
Sau3AI	GATC	8 cut(s)	107, 128, 369, 501, 790, 1131, 1510, 2130
ScaI	AGTACT	1 cut(s)	2086
SchI	GAGTC	7 cut(s)	263, 517, 1195, 1277, 1308, 1688, 1888
ScrFI	CCNGG	1 cut(s)	521
SduI	GDGCHC	4 cut(s)	419, 1630, 1668, 1774
SfaNI	GCATC	4 cut(s)	101, 125, 1786, 1808
SfcI	CTRYAG	1 cut(s)	46
SfuI	TTCGAA	1 cut(s)	548
SmiMI	CAYNNNNRTG	4 cut(s)	728, 1733, 1763, 1804
SmlI	CTYRAG	3 cut(s)	386, 463, 1400
SmoI	CTYRAG	3 cut(s)	386, 463, 1400
SnaBI	TACGTA	1 cut(s)	1529
SpeI	ACTAGT	1 cut(s)	34
Sse9I	AATT	7 cut(s)	29, 551, 1108, 1672, 1823, 1927, 2194
SsiI	CCGC	3 cut(s)	1193, 1573, 1744
SspI	AATATT	4 cut(s)	325, 595, 607, 1717
SspMI	CTAG	5 cut(s)	35, 978, 1017, 1443, 2019
StyD4I	CCNGG	1 cut(s)	519
StyI	CCWWGG	3 cut(s)	151, 1016, 2018
TaaI	ACNGT	6 cut(s)	169, 246, 1260, 1477, 1686, 1776
TaiI	ACGT	3 cut(s)	714, 1200, 1531
TaqI	TCGA	2 cut(s)	548, 797
TaqII	GACCGA	1 cut(s)	634
TasI	AATT	7 cut(s)	29, 551, 1108, 1672, 1823, 1927, 2194
TatI	WGTACW	2 cut(s)	583, 2084
Tru1I	TTAA	9 cut(s)	279, 330, 702, 914, 1055, 1293, 1671, 1677, 2057
Tru9I	TTAA	9 cut(s)	279, 330, 702, 914, 1055, 1293, 1671, 1677, 2057
TscAI	CASTG	8 cut(s)	78, 424, 684, 1438, 1689, 1779, 1794, 1906
TseFI	GTSAC	4 cut(s)	73, 155, 681, 1562
TseI	GCWGC	3 cut(s)	51, 952, 1954
Tsp45I	GTSAC	4 cut(s)	73, 155, 681, 1562
TspDTI	ATGAA	7 cut(s)	162, 556, 1472, 1554, 1740, 1753, 1940
TspRI	CASTG	8 cut(s)	78, 424, 684, 1438, 1689, 1779, 1794, 1906
Tth111I	GACNNNGTC	1 cut(s)	1724
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	3 cut(s)	1823, 1927, 2194
XmaJI	CCTAGG	2 cut(s)	1016, 2018
XmiI	GTMKAC	1 cut(s)	511
XmnI	GAANNNNTTC	2 cut(s)	1112, 2111
XspI	CTAG	5 cut(s)	35, 978, 1017, 1443, 2019
ZrmI	AGTACT	1 cut(s)	2086
Zsp2I	ATGCAT	2 cut(s)	118, 1801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.