Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027733.1

Orthogroup ID

OG0001667

Physical Location & Seq

Genomic Coordinates Reverse (-)

1156 .. 2668

Gene Structure 1513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027733.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atgatgactgttggatcgagttactcaggtagcaaccaagttcctaatgactttgatgtgagtcgggcttcaagcaatggtgatgggactactggtttttctactggacccttgtacaacaatgttcaaaagatgatgcctctgagtgagggagggatgacagaaacccttgatccaactcttacttcatcttcgggtggttctggcagtagttttggcagaggagggaagcagtctaatgttgtcaatagcaacaaaagaaagggtagagatgcagaggactcagagtgccaaagtgaggcagctgaaattgaatcagctgcgggaaacaagccagcgcaacgatcaggatcatcgaggaggacacgtgctgctgaagtccataatctctcagaaaggagacgaagagatcggatcaatgagaaaatgaaggcactgcaagagctcatacctcattctaacaagacagacaaagcatcaatgttagatgaggcaattgaatacttgaagtctcttcagctgcaacttcaggtaatgtggatgggaggtgggatggcaccgatgatgtttccaggagtacagcactatatgtcccgaatgggaatgggaatgggaccgcctgccatgccttctatgcacaatctaatgcaattacctcgggtccctctagttgatcagtgcatgactgtgactccaccaacaaaccaggcagtaatgtgccaaacacctgttctgaatcctgttgattaccataaccagatgcaaaatccctctattcaggagcaatacgcacgtctcatgggattccatcatatgcagaccatgtctcagcctatgaatatgttcagattcggctctcagcctcttccgcaaagtcaaatgatggcaccaactggcatgaacactggacctttaagtggtggagctgcaactaatgatgctttgagtggcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009642 GO:0009645 GO:0009692 GO:0009693 GO:0009704 GO:0009791 GO:0009889 GO:0009966 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0010244 GO:0010468 GO:0010556 GO:0010600 GO:0010646 GO:0010817 GO:0010928 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043449 GO:0043450 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0046885 GO:0048583 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0080090 GO:0090354 GO:0097159 GO:0104004 GO:0140110 GO:1900673 GO:1900674 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

HLH

Protein Analysis

318

Amino Acids

34.51

Weight (kDa)

8.42

Isoelectric Point (pI)

69.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43010 AT2G43010 AT2G43010 AT2G43010 AT2G43010 AT3G59060 AT3G59060 AT3G59060 AT3G59060
fragaria_vesca	FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940
malus_domestica	MD09G1146000.v1.1 MD17G1132600.v1.1
prunus_persica	Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1
pyrus_communis	pycom09g06630 pycom17g12610
rosa_chinensis	RchiOBHm_Chr2g0152511
rosa_laevigata	RLG00000020642
rosa_multiflora	Rmu_sc0005366.1_g000001 Rmu_sc0027733.1_g000001 Rmu_sc0027737.1_g000001 Rmu_sc0034754.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095640
rosa_rugosa	Rorug02G0434000 Rorug02G0434100 Rorug02G0434200
rosa_samantha	Rh2AG495400 Rh2BG507300 Rh2CG481500 Rh2CG481600 Rh2DG518600
rosa_wichuraiana	Rw2G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	556, 886
AciI	CCGC	3 cut(s)	323, 617, 869
AclWI	GGATC	4 cut(s)	22, 167, 358, 422
AcuI	CTGAAG	3 cut(s)	396, 500, 512
AcvI	CACGTG	1 cut(s)	368
AfaI	GTAC	2 cut(s)	116, 579
AfiI	CCNNNNNNNGG	2 cut(s)	298, 917
AflIII	ACRYGT	1 cut(s)	365
AgsI	TTSAA	5 cut(s)	72, 128, 314, 500, 508
AjiI	CACGTC	1 cut(s)	794
AjnI	CCWGG	2 cut(s)	571, 705
AjuI	GAANNNNNNNTTGG	4 cut(s)	169, 201, 714, 746
AluBI	AGCT	5 cut(s)	305, 320, 445, 520, 926
AluI	AGCT	5 cut(s)	305, 320, 445, 520, 926
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	4 cut(s)	394, 516, 800, 831
AlwI	GGATC	4 cut(s)	22, 167, 358, 422
Ama87I	CYCGRG	1 cut(s)	657
ApeKI	GCWGC	5 cut(s)	302, 320, 371, 520, 926
Asp700I	GAANNNNTTC	1 cut(s)	842
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	4 cut(s)	107, 614, 661, 908
AsuHPI	GGTGA	1 cut(s)	92
AvaI	CYCGRG	1 cut(s)	657
AvaII	GGWCC	4 cut(s)	107, 614, 661, 908
BanI	GGYRCC	2 cut(s)	556, 886
BanII	GRGCYC	1 cut(s)	447
BbrPI	CACGTG	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	447
BbvI	GCAGC	5 cut(s)	307, 314, 358, 507, 913
BccI	CCATC	5 cut(s)	77, 535, 547, 816, 877
BcgI	CGANNNNNNTGC	2 cut(s)	638, 672
BciT130I	CCWGG	2 cut(s)	573, 707
BclI	TGATCA	1 cut(s)	673
BcoDI	GTCTC	4 cut(s)	394, 516, 800, 831
BfaI	CTAG	1 cut(s)	668
BisI	GCNGC	5 cut(s)	303, 321, 372, 521, 927
BlsI	GCNGC	5 cut(s)	304, 322, 373, 522, 928
Bme1390I	CCNGG	2 cut(s)	573, 707
Bme18I	GGWCC	4 cut(s)	107, 614, 661, 908
BmeT110I	CYCGRG	1 cut(s)	657
BmgBI	CACGTC	1 cut(s)	794
BmgT120I	GGNCC	4 cut(s)	107, 614, 661, 908
BmiI	GGNNCC	6 cut(s)	109, 558, 615, 662, 663, 888
BmrFI	CCNGG	2 cut(s)	573, 707
BmsI	GCATC	5 cut(s)	126, 262, 485, 750, 928
BsaAI	YACGTR	1 cut(s)	368
BsaBI	GATNNNNATC	1 cut(s)	349
BsaJI	CCNNGG	1 cut(s)	656
BsaXI	ACNNNNNCTCC	4 cut(s)	352, 382, 676, 706
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 917
Bse1I	ACTGG	4 cut(s)	97, 109, 898, 910
Bse3DI	GCAATG	1 cut(s)	82
Bse8I	GATNNNNATC	1 cut(s)	349
BseBI	CCWGG	2 cut(s)	573, 707
BseDI	CCNNGG	1 cut(s)	656
BseGI	GGATG	3 cut(s)	162, 546, 558
BseJI	GATNNNNATC	1 cut(s)	349
BseLI	CCNNNNNNNGG	2 cut(s)	298, 917
BseMI	GCAATG	1 cut(s)	82
BseMII	CTCAG	6 cut(s)	39, 134, 297, 405, 842, 872
BseNI	ACTGG	4 cut(s)	97, 109, 898, 910
BseRI	GAGGAG	2 cut(s)	237, 373
BseXI	GCAGC	5 cut(s)	307, 314, 358, 507, 913
BshNI	GGYRCC	2 cut(s)	556, 886
BsiHKAI	GWGCWC	1 cut(s)	447
BsiHKCI	CYCGRG	1 cut(s)	657
BslFI	GGGAC	4 cut(s)	100, 577, 627, 647
BslI	CCNNNNNNNGG	2 cut(s)	298, 917
BsmAI	GTCTC	4 cut(s)	394, 516, 800, 831
BsmBI	CGTCTC	2 cut(s)	394, 800
BsmFI	GGGAC	4 cut(s)	100, 577, 627, 647
BsoBI	CYCGRG	1 cut(s)	657
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp1407I	TGTACA	1 cut(s)	114
Bsp143I	GATC	7 cut(s)	14, 172, 344, 350, 409, 414, 673
BspACI	CCGC	3 cut(s)	323, 617, 869
BspCNI	CTCAG	6 cut(s)	38, 135, 296, 404, 841, 871
BspLI	GGNNCC	6 cut(s)	109, 558, 615, 662, 663, 888
BspPI	GGATC	4 cut(s)	22, 167, 358, 422
BspT107I	GGYRCC	2 cut(s)	556, 886
BsrDI	GCAATG	1 cut(s)	82
BsrGI	TGTACA	1 cut(s)	114
BsrI	ACTGG	4 cut(s)	97, 109, 898, 910
BssECI	CCNNGG	1 cut(s)	656
BssMI	GATC	7 cut(s)	14, 172, 344, 350, 409, 414, 673
Bst2UI	CCWGG	2 cut(s)	573, 707
Bst4CI	ACNGT	2 cut(s)	10, 688
Bst6I	CTCTTC	3 cut(s)	400, 519, 870
BstAUI	TGTACA	1 cut(s)	114
BstBAI	YACGTR	1 cut(s)	368
BstC8I	GCNNGC	2 cut(s)	336, 621
BstDEI	CTNAG	6 cut(s)	25, 143, 283, 391, 828, 858
BstF5I	GGATG	3 cut(s)	162, 546, 558
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	7 cut(s)	17, 175, 347, 353, 412, 417, 676
BstMAI	GTCTC	4 cut(s)	394, 516, 800, 831
BstMBI	GATC	7 cut(s)	14, 172, 344, 350, 409, 414, 673
BstMWI	GCNNNNNNNGC	3 cut(s)	625, 634, 868
BstNI	CCWGG	2 cut(s)	573, 707
BstSCI	CCNGG	2 cut(s)	571, 705
BstV1I	GCAGC	5 cut(s)	307, 314, 358, 507, 913
BtrI	CACGTC	1 cut(s)	794
BtsCI	GGATG	3 cut(s)	162, 546, 558
BtsI	GCAGTG	1 cut(s)	434
BtsIMutI	CAGTG	3 cut(s)	434, 683, 903
Cac8I	GCNNGC	2 cut(s)	336, 621
CfoI	GCGC	1 cut(s)	340
Cfr13I	GGNCC	4 cut(s)	107, 614, 661, 908
Csp6I	GTAC	2 cut(s)	115, 578
CviAII	CATG	5 cut(s)	625, 682, 799, 823, 898
CviQI	GTAC	2 cut(s)	115, 578
DdeI	CTNAG	6 cut(s)	25, 143, 283, 391, 828, 858
DpnI	GATC	7 cut(s)	16, 174, 346, 352, 411, 416, 675
DpnII	GATC	7 cut(s)	14, 172, 344, 350, 409, 414, 673
Eam1104I	CTCTTC	3 cut(s)	400, 519, 870
EarI	CTCTTC	3 cut(s)	400, 519, 870
Ecl136II	GAGCTC	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	447
Eco47I	GGWCC	4 cut(s)	107, 614, 661, 908
Eco53kI	GAGCTC	1 cut(s)	445
Eco57I	CTGAAG	3 cut(s)	396, 500, 512
Eco72I	CACGTG	1 cut(s)	368
Eco88I	CYCGRG	1 cut(s)	657
EcoICRI	GAGCTC	1 cut(s)	445
EcoO109I	RGGNCCY	1 cut(s)	661
EcoRII	CCWGG	2 cut(s)	571, 705
EcoT38I	GRGCYC	1 cut(s)	447
Esp3I	CGTCTC	2 cut(s)	394, 800
FaeI	CATG	5 cut(s)	628, 685, 802, 826, 901
FaqI	GGGAC	4 cut(s)	100, 577, 627, 647
FatI	CATG	5 cut(s)	624, 681, 798, 822, 897
FauI	CCCGC	1 cut(s)	316
FauNDI	CATATG	1 cut(s)	813
FbaI	TGATCA	1 cut(s)	673
Fnu4HI	GCNGC	5 cut(s)	303, 321, 372, 521, 927
FokI	GGATG	3 cut(s)	169, 553, 565
FriOI	GRGCYC	1 cut(s)	447
Fsp4HI	GCNGC	5 cut(s)	303, 321, 372, 521, 927
FspBI	CTAG	1 cut(s)	668
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	5 cut(s)	303, 321, 372, 521, 927
HhaI	GCGC	1 cut(s)	340
Hin1II	CATG	5 cut(s)	628, 685, 802, 826, 901
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HinfI	GANTC	7 cut(s)	61, 281, 314, 691, 736, 804, 849
HphI	GGTGA	1 cut(s)	92
Hpy188I	TCNGA	6 cut(s)	144, 286, 394, 414, 735, 848
Hpy188III	TCNNGA	3 cut(s)	348, 594, 779
HpyAV	CCTTC	2 cut(s)	424, 639
HpyCH4III	ACNGT	2 cut(s)	10, 688
HpyCH4IV	ACGT	2 cut(s)	367, 793
HpyCH4V	TGCA	9 cut(s)	275, 439, 523, 637, 649, 681, 763, 817, 929
HpyF10VI	GCNNNNNNNGC	3 cut(s)	625, 634, 868
HpyF3I	CTNAG	6 cut(s)	25, 143, 283, 391, 828, 858
HpySE526I	ACGT	2 cut(s)	367, 793
Hsp92II	CATG	5 cut(s)	628, 685, 802, 826, 901
HspAI	GCGC	1 cut(s)	338
KflI	GGGWCCC	1 cut(s)	661
Ksp22I	TGATCA	1 cut(s)	673
Kzo9I	GATC	7 cut(s)	14, 172, 344, 350, 409, 414, 673
LmnI	GCTCC	2 cut(s)	781, 923
Lsp1109I	GCAGC	5 cut(s)	307, 314, 358, 507, 913
LweI	GCATC	5 cut(s)	126, 262, 485, 750, 928
MaeI	CTAG	1 cut(s)	668
MaeII	ACGT	2 cut(s)	367, 793
MaeIII	GTNAC	2 cut(s)	20, 688
MalI	GATC	7 cut(s)	16, 174, 346, 352, 411, 416, 675
MboI	GATC	7 cut(s)	14, 172, 344, 350, 409, 414, 673
MboII	GAAGA	4 cut(s)	183, 417, 506, 857
MfeI	CAATTG	1 cut(s)	495
MhlI	GDGCHC	1 cut(s)	447
MluCI	AATT	3 cut(s)	309, 495, 650
MlyI	GAGTC	3 cut(s)	70, 275, 685
MmeI	TCCRAC	1 cut(s)	200
MroXI	GAANNNNTTC	1 cut(s)	842
MseI	TTAA	1 cut(s)	914
MslI	CAYNNNNRTG	1 cut(s)	686
MspA1I	CMGCKG	3 cut(s)	305, 320, 520
MspR9I	CCNGG	2 cut(s)	573, 707
MunI	CAATTG	1 cut(s)	495
MvaI	CCWGG	2 cut(s)	573, 707
MwoI	GCNNNNNNNGC	3 cut(s)	625, 634, 868
NdeI	CATATG	1 cut(s)	813
NdeII	GATC	7 cut(s)	14, 172, 344, 350, 409, 414, 673
NlaIII	CATG	5 cut(s)	628, 685, 802, 826, 901
NlaIV	GGNNCC	6 cut(s)	109, 558, 615, 662, 663, 888
NmuCI	GTSAC	1 cut(s)	688
PdmI	GAANNNNTTC	1 cut(s)	842
PfeI	GAWTC	4 cut(s)	314, 736, 804, 849
PflFI	GACNNNGTC	1 cut(s)	823
PfoI	TCCNGGA	1 cut(s)	571
PkrI	GCNGC	5 cut(s)	304, 322, 373, 522, 928
PleI	GAGTC	3 cut(s)	69, 275, 685
PmaCI	CACGTG	1 cut(s)	368
PmlI	CACGTG	1 cut(s)	368
PpsI	GAGTC	3 cut(s)	69, 275, 685
Ppu21I	YACGTR	1 cut(s)	368
PpuMI	RGGWCCY	1 cut(s)	661
Psp124BI	GAGCTC	1 cut(s)	447
Psp5II	RGGWCCY	1 cut(s)	661
Psp6I	CCWGG	2 cut(s)	571, 705
PspCI	CACGTG	1 cut(s)	368
PspGI	CCWGG	2 cut(s)	571, 705
PspN4I	GGNNCC	6 cut(s)	109, 558, 615, 662, 663, 888
PspPI	GGNCC	4 cut(s)	107, 614, 661, 908
PspPPI	RGGWCCY	1 cut(s)	661
PsyI	GACNNNGTC	1 cut(s)	823
PvuII	CAGCTG	3 cut(s)	305, 320, 520
RsaI	GTAC	2 cut(s)	116, 579
RsaNI	GTAC	2 cut(s)	115, 578
RseI	CAYNNNNRTG	1 cut(s)	686
SacI	GAGCTC	1 cut(s)	447
SaqAI	TTAA	1 cut(s)	914
SatI	GCNGC	5 cut(s)	303, 321, 372, 521, 927
Sau3AI	GATC	7 cut(s)	14, 172, 344, 350, 409, 414, 673
Sau96I	GGNCC	4 cut(s)	107, 614, 661, 908
SchI	GAGTC	3 cut(s)	70, 275, 685
ScrFI	CCNGG	2 cut(s)	573, 707
SduI	GDGCHC	1 cut(s)	447
SfaNI	GCATC	5 cut(s)	126, 262, 485, 750, 928
SinI	GGWCC	4 cut(s)	107, 614, 661, 908
SmiMI	CAYNNNNRTG	1 cut(s)	686
Sse9I	AATT	3 cut(s)	309, 495, 650
SsiI	CCGC	3 cut(s)	323, 617, 869
SspMI	CTAG	1 cut(s)	668
SstI	GAGCTC	1 cut(s)	447
StyD4I	CCNGG	2 cut(s)	571, 705
TaaI	ACNGT	2 cut(s)	10, 688
TaiI	ACGT	2 cut(s)	370, 796
TaqI	TCGA	2 cut(s)	17, 356
TasI	AATT	3 cut(s)	309, 495, 650
TatI	WGTACW	2 cut(s)	114, 577
TfiI	GAWTC	4 cut(s)	314, 736, 804, 849
Tru1I	TTAA	1 cut(s)	914
Tru9I	TTAA	1 cut(s)	914
TscAI	CASTG	3 cut(s)	441, 683, 910
TseFI	GTSAC	1 cut(s)	688
TseI	GCWGC	5 cut(s)	302, 320, 371, 520, 926
Tsp45I	GTSAC	1 cut(s)	688
TspDTI	ATGAA	4 cut(s)	177, 443, 851, 914
TspRI	CASTG	3 cut(s)	441, 683, 910
Tth111I	GACNNNGTC	1 cut(s)	823
VpaK11BI	GGWCC	4 cut(s)	107, 614, 661, 908
XmnI	GAANNNNTTC	1 cut(s)	842
XspI	CTAG	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.