Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001667

Physical Location & Seq

Genomic Coordinates Reverse (-)

55520336 .. 55521358

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0434000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGAAAAGCTATCTCATTTGATTCAGTCTGCTGTGGAGTTTGGCCAATGGAAACCTGTTAGAGCTTCTCAATCTGGCCCCATGGTTTCTCATTTATTTTTTGCTGATGATTTAATGCTTTTTGCTGAGGCCACTGCTAATCAAGCCACTACGCTCAAAAAATGTCTTGACCTCTTTTGCTCTCTCTTTGGACAAGCTGTTAGTTATCAGAAGTCTCTTATTTTTTGCTCTCCTAACACTACCAAGATGACTGCTGCGGATATTTCTAGGACGTGTGGCTCTCCGCTTACTGAGGATCTTGGAAAATATCTTGGTATGCCTCTCATTCATTCTCGAGTTAATATGCATACTTATGCAGGTGTTTTTGACAAGATCCAGAATAGACTCTCTCGCTGGAAGAGTAAGGTGCTTAGCATGGCTGGCAGACTTACTTTAGTTCAATCTGTTACTTCTTCTATCCCTATTTATGCCATGCAAACTGCTAAACTACATGCTAGTCTTTGTGATAAAATTGATAAGTTAAATAGAGACTTTATTTGGGGGGATACTGATGGCAAAAAGAAAGTCCACCTGGTCAACTGGGATATGGTCTGCCAACCCAAACAGTTGGGTGGTTTGGGAGTTAAATTGACTGCTGAGATGAACCAGGCAATGCTTTCTAAAGCAAGTTGGAGAATCTTCCAAAATGATAGTGGTTTATGGGCTTCGATTTACAAAGCTAAGTATCTATCTAAAAATCTTCTTACTGATATGAACTATAAGCCCCCTCCTGATTGTTCTAGCACTTGGAGAAGCATCTCCTATGGTGCTGAGTTGATGAGAAAATGCTTAAAATGGAGAGTTGGTGATGGGAGAAGAATTAAGTTTTGGACTGATCATTGGCTCATGCCCAATCCCCTTATCACTTTTGCTCTTCCCTTAGCTACTATCAATATTAATGCTGTTATCAGTGATTTTTGGGATGATGTTGGTTGGAAGATTGATCTCCTCCTTACTTTGGTGCCAAGTTACATATATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009642 GO:0009645 GO:0009692 GO:0009693 GO:0009704 GO:0009791 GO:0009889 GO:0009966 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0010244 GO:0010468 GO:0010556 GO:0010600 GO:0010646 GO:0010817 GO:0010928 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043449 GO:0043450 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0046885 GO:0048583 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0080090 GO:0090354 GO:0097159 GO:0104004 GO:0140110 GO:1900673 GO:1900674 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

HLH

Protein Analysis

340

Amino Acids

38.44

Weight (kDa)

9.29

Isoelectric Point (pI)

32.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43010 AT2G43010 AT2G43010 AT2G43010 AT2G43010 AT3G59060 AT3G59060 AT3G59060 AT3G59060
fragaria_vesca	FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940
malus_domestica	MD09G1146000.v1.1 MD17G1132600.v1.1
prunus_persica	Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1
pyrus_communis	pycom09g06630 pycom17g12610
rosa_chinensis	RchiOBHm_Chr2g0152511
rosa_laevigata	RLG00000020642
rosa_multiflora	Rmu_sc0005366.1_g000001 Rmu_sc0027733.1_g000001 Rmu_sc0027737.1_g000001 Rmu_sc0034754.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095640
rosa_rugosa	Rorug02G0434000 Rorug02G0434100 Rorug02G0434200
rosa_samantha	Rh2AG495400 Rh2BG507300 Rh2CG481500 Rh2CG481600 Rh2DG518600
rosa_wichuraiana	Rw2G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	347
Acc36I	ACCTGC	1 cut(s)	347
AccB1I	GGYRCC	1 cut(s)	1000
AciI	CCGC	2 cut(s)	257, 284
AclWI	GGATC	2 cut(s)	303, 367
AcoI	YGGCCR	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	997
AflIII	ACRYGT	1 cut(s)	272
AgsI	TTSAA	1 cut(s)	440
AjiI	CACGTC	1 cut(s)	273
AjnI	CCWGG	2 cut(s)	570, 645
AjuI	GAANNNNNNNTTGG	2 cut(s)	850, 882
AluBI	AGCT	5 cut(s)	10, 65, 197, 719, 923
AluI	AGCT	5 cut(s)	10, 65, 197, 719, 923
Alw26I	GTCTC	2 cut(s)	219, 522
AlwI	GGATC	2 cut(s)	303, 367
Ama87I	CYCGRG	1 cut(s)	333
AoxI	GGCC	3 cut(s)	43, 76, 129
ApeKI	GCWGC	1 cut(s)	254
ArsI	GACNNNNNNTTYG	2 cut(s)	549, 581
AseI	ATTAAT	1 cut(s)	936
AspS9I	GGNCC	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	857
AvaI	CYCGRG	1 cut(s)	333
BalI	TGGCCA	1 cut(s)	45
BanI	GGYRCC	1 cut(s)	1000
BbvCI	CCTCAGC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	2 cut(s)	545, 842
BciT130I	CCWGG	2 cut(s)	572, 647
BciVI	GTATCC	1 cut(s)	538
BclI	TGATCA	1 cut(s)	874
BcoDI	GTCTC	2 cut(s)	219, 522
BfaI	CTAG	3 cut(s)	267, 495, 780
BfuAI	ACCTGC	1 cut(s)	347
BfuI	GTATCC	1 cut(s)	538
BisI	GCNGC	1 cut(s)	255
BlpI	GCTNAGC	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	2 cut(s)	572, 647
BmeT110I	CYCGRG	1 cut(s)	333
BmgBI	CACGTC	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	79, 1002
BmrFI	CCNGG	2 cut(s)	572, 647
BmrI	ACTGGG	1 cut(s)	589
BmsI	GCATC	1 cut(s)	804
BmuI	ACTGGG	1 cut(s)	589
Bpu10I	CCTNAGC	2 cut(s)	126, 919
Bpu1102I	GCTNAGC	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	81
BsaXI	ACNNNNNCTCC	2 cut(s)	829, 859
Bsc4I	CCNNNNNNNGG	1 cut(s)	997
Bse1I	ACTGG	1 cut(s)	584
Bse3DI	GCAATG	1 cut(s)	657
BseBI	CCWGG	2 cut(s)	572, 647
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	1 cut(s)	967
BseLI	CCNNNNNNNGG	1 cut(s)	997
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	4 cut(s)	117, 282, 627, 801
BseNI	ACTGG	1 cut(s)	584
BseRI	GAGGAG	1 cut(s)	977
BseXI	GCAGC	1 cut(s)	241
BshFI	GGCC	3 cut(s)	45, 78, 131
BshNI	GGYRCC	1 cut(s)	1000
BsiHKCI	CYCGRG	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	997
BsmAI	GTCTC	2 cut(s)	219, 522
BsnI	GGCC	3 cut(s)	45, 78, 131
BsoBI	CYCGRG	1 cut(s)	333
Bsp143I	GATC	4 cut(s)	295, 372, 874, 982
Bsp1720I	GCTNAGC	1 cut(s)	410
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	2 cut(s)	257, 284
BspANI	GGCC	3 cut(s)	45, 78, 131
BspCNI	CTCAG	4 cut(s)	118, 283, 628, 802
BspLI	GGNNCC	2 cut(s)	79, 1002
BspMI	ACCTGC	1 cut(s)	347
BspPI	GGATC	2 cut(s)	303, 367
BspQI	GCTCTTC	1 cut(s)	918
BspT107I	GGYRCC	1 cut(s)	1000
BsrDI	GCAATG	1 cut(s)	657
BsrI	ACTGG	1 cut(s)	584
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	4 cut(s)	295, 372, 874, 982
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	572, 647
Bst4CI	ACNGT	1 cut(s)	606
Bst6I	CTCTTC	2 cut(s)	392, 918
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	7 cut(s)	126, 291, 410, 636, 720, 810, 919
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	967
BstKTI	GATC	4 cut(s)	298, 375, 877, 985
BstMAI	GTCTC	2 cut(s)	219, 522
BstMBI	GATC	4 cut(s)	295, 372, 874, 982
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 420
BstNI	CCWGG	2 cut(s)	572, 647
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	2 cut(s)	570, 645
BstV1I	GCAGC	1 cut(s)	241
BstX2I	RGATCY	2 cut(s)	295, 372
BstXI	CCANNNNNNTGG	1 cut(s)	607
BstYI	RGATCY	2 cut(s)	295, 372
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	3 cut(s)	45, 78, 131
BtgI	CCRYGG	1 cut(s)	81
BtrI	CACGTC	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	967
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	2 cut(s)	132, 955
BveI	ACCTGC	1 cut(s)	347
Cac8I	GCNNGC	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	77
CsiI	ACCWGGT	1 cut(s)	570
CviAII	CATG	5 cut(s)	82, 415, 472, 491, 886
DdeI	CTNAG	7 cut(s)	126, 291, 410, 636, 720, 810, 919
DpnI	GATC	4 cut(s)	297, 374, 876, 984
DpnII	GATC	4 cut(s)	295, 372, 874, 982
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	2 cut(s)	392, 918
EarI	CTCTTC	2 cut(s)	392, 918
Eco130I	CCWWGG	1 cut(s)	81
Eco88I	CYCGRG	1 cut(s)	333
EcoRII	CCWGG	2 cut(s)	570, 645
EcoT14I	CCWWGG	1 cut(s)	81
EcoT22I	ATGCAT	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	5 cut(s)	85, 418, 475, 494, 889
FatI	CATG	5 cut(s)	81, 414, 471, 490, 885
FbaI	TGATCA	1 cut(s)	874
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	1 cut(s)	974
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	3 cut(s)	267, 495, 780
GluI	GCNGC	1 cut(s)	255
HaeIII	GGCC	3 cut(s)	45, 78, 131
Hin1II	CATG	5 cut(s)	85, 418, 475, 494, 889
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HinfI	GANTC	3 cut(s)	22, 384, 675
HphI	GGTGA	1 cut(s)	857
Hpy166II	GTNNAC	2 cut(s)	568, 577
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	4 cut(s)	167, 333, 376, 770
Hpy8I	GTNNAC	2 cut(s)	568, 577
HpyCH4III	ACNGT	1 cut(s)	606
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	3 cut(s)	346, 356, 475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 420
HpyF3I	CTNAG	7 cut(s)	126, 291, 410, 636, 720, 810, 919
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	5 cut(s)	85, 418, 475, 494, 889
Ksp22I	TGATCA	1 cut(s)	874
Kzo9I	GATC	4 cut(s)	295, 372, 874, 982
LguI	GCTCTTC	1 cut(s)	918
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	1 cut(s)	804
MabI	ACCWGGT	1 cut(s)	570
MaeI	CTAG	3 cut(s)	267, 495, 780
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	2 cut(s)	445, 1007
MalI	GATC	4 cut(s)	297, 374, 876, 984
MboI	GATC	4 cut(s)	295, 372, 874, 982
MboII	GAAGA	7 cut(s)	409, 444, 670, 731, 867, 905, 988
MflI	RGATCY	2 cut(s)	295, 372
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	3 cut(s)	510, 626, 858
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	378
MmeI	TCCRAC	2 cut(s)	650, 953
MnlI	CCTC	6 cut(s)	121, 182, 286, 330, 777, 998
Mox20I	TGGCCA	1 cut(s)	45
Mph1103I	ATGCAT	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	7 cut(s)	113, 339, 521, 624, 830, 861, 936
MslI	CAYNNNNRTG	1 cut(s)	351
Msp20I	TGGCCA	1 cut(s)	45
MspR9I	CCNGG	2 cut(s)	572, 647
MvaI	CCWGG	2 cut(s)	572, 647
MwoI	GCNNNNNNNGC	2 cut(s)	143, 420
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	4 cut(s)	295, 372, 874, 982
NlaIII	CATG	5 cut(s)	85, 418, 475, 494, 889
NlaIV	GGNNCC	2 cut(s)	79, 1002
NsiI	ATGCAT	1 cut(s)	348
NspI	RCATGY	1 cut(s)	494
PaeR7I	CTCGAG	1 cut(s)	333
PaqCI	CACCTGC	1 cut(s)	347
PciSI	GCTCTTC	1 cut(s)	918
PfeI	GAWTC	2 cut(s)	22, 675
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	1 cut(s)	378
PpsI	GAGTC	1 cut(s)	378
PshBI	ATTAAT	1 cut(s)	936
Psp6I	CCWGG	2 cut(s)	570, 645
PspGI	CCWGG	2 cut(s)	570, 645
PspN4I	GGNNCC	2 cut(s)	79, 1002
PspPI	GGNCC	1 cut(s)	77
PsuI	RGATCY	2 cut(s)	295, 372
RseI	CAYNNNNRTG	1 cut(s)	351
SapI	GCTCTTC	1 cut(s)	918
SaqAI	TTAA	7 cut(s)	113, 339, 521, 624, 830, 861, 936
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	4 cut(s)	295, 372, 874, 982
Sau96I	GGNCC	1 cut(s)	77
SchI	GAGTC	1 cut(s)	378
ScrFI	CCNGG	2 cut(s)	572, 647
SexAI	ACCWGGT	1 cut(s)	570
SfaNI	GCATC	1 cut(s)	804
Sfr274I	CTCGAG	1 cut(s)	333
SlaI	CTCGAG	1 cut(s)	333
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse9I	AATT	3 cut(s)	510, 626, 858
SsiI	CCGC	2 cut(s)	257, 284
SspI	AATATT	1 cut(s)	934
SspMI	CTAG	3 cut(s)	267, 495, 780
StyD4I	CCNGG	2 cut(s)	570, 645
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	606
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	2 cut(s)	334, 707
TasI	AATT	3 cut(s)	510, 626, 858
TfiI	GAWTC	2 cut(s)	22, 675
Tru1I	TTAA	7 cut(s)	113, 339, 521, 624, 830, 861, 936
Tru9I	TTAA	7 cut(s)	113, 339, 521, 624, 830, 861, 936
TscAI	CASTG	2 cut(s)	139, 955
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	3 cut(s)	317, 656, 767
TspRI	CASTG	2 cut(s)	139, 955
VspI	ATTAAT	1 cut(s)	936
XceI	RCATGY	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	689
XhoI	CTCGAG	1 cut(s)	333
XspI	CTAG	3 cut(s)	267, 495, 780
Zsp2I	ATGCAT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.