Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001667

Physical Location & Seq

Genomic Coordinates Forward (+)

30793315 .. 30797723

Gene Structure 4409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38940.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGAATTCTTGCATTCCTAATTGGAACTTTGAGGGTGATCTCCCTTCAACCAACCAAAAGAAACCCTCGGGGCCAGATCATGAACTAGTAGAGCTGTTATGGAGAAATGGGCAGGTAGTTTTGCACAGCCAAACAAATCGAAAACCAGGTCTTAATCCTAATGAGTCAAGGCAAGTTCAGAAACATGATCAAATGAGGGTTGGTGGGTTCTATGGGAACTCAGGTAATTTGATTCATGATGAGGAAGCAGTCTCCATGATCCAATACCCTCTAGAAGATTCCTTTGATAAAGATTTCTGTTCCCATTTCTTTTCTGAACTGCCTTCCTGTGATCCACTTGAGATTGAGAAGCCAATCAAACAATTTGGAGAAGAGAAGTTTGTTAAGTTTGATGCTTCTAATGCCACCCATCTTGTTTCGTCTTCACCACAAACTAATGTCAAGTCCTCTACTGGTGTGGCATATCCTGAAAATCCAATGCCTCCTCCAAGATTTCAGATCAGTAATCCAACTGAGAAAAACCAAAATCTTGGAGGCTTGGGGAAAGTAGTCAATTTTTCTCAATTTTCAGCACTGGGAAGGGGTGATATAGGATCTTCCAGAAAACAAATAAGAGGGACAGAGCCTGGTAAGTTGAATCAAGCAGAGGTTAGAGAGTGTTCTATGATGACTGTTGGATCCAGTTACTCAGGTAGCAACCAAGTTCCTAATGACTTTGATGTGAGTCGGGCTTCGAGCAATGGTGATGGGACTACTGTGTTTTCTACTGGAACCTTGTACAACAATGTTCAAAAGATGATGCCTCTGAGTGAGGGAGGGATGACAGAAACCCTTGATCCAACTCTTACTTCATCTTCCGGCGGTTCTGGCAGTAGTTTTGGCAGAGGGAAGCAGTCTAATGTTGTCAATAGCAACAAAAGAAAGGGTAGAGATGCCGAGGACTCAGAGTGCCAAAGTAAGGCTGCTGAAATTGAATCGGCTGCGGGAAACAAGCCAGCACCACGATCAGGATCATCAAGGAGGACACGTGCTGCTGAAGTCCACAATCTCTCAGAAAGGAGACGAAGAGATCGGATCAATGAGAAGATGAGGGCATTGCAAGAGCTCATACCTCATTCTAACAAGACGGACAAAGCGTCAATGTTAGATGAGGCAATTGAATACTTGAAGTCTCTTCAGCTGCAACTTCAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009642 GO:0009645 GO:0009692 GO:0009693 GO:0009704 GO:0009791 GO:0009889 GO:0009966 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0010244 GO:0010468 GO:0010556 GO:0010600 GO:0010646 GO:0010817 GO:0010928 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043449 GO:0043450 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0046885 GO:0048583 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0080090 GO:0090354 GO:0097159 GO:0104004 GO:0140110 GO:1900673 GO:1900674 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

HLH

Protein Analysis

399

Amino Acids

43.73

Weight (kDa)

6.73

Isoelectric Point (pI)

54.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	346 - 393	6.4e-14	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	352 - 398	2.1e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43010 AT2G43010 AT2G43010 AT2G43010 AT2G43010 AT3G59060 AT3G59060 AT3G59060 AT3G59060
fragaria_vesca	FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940 FvH4_6g38940
malus_domestica	MD09G1146000.v1.1 MD17G1132600.v1.1
prunus_persica	Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1 Prupe.3G179800_v2.0.a1
pyrus_communis	pycom09g06630 pycom17g12610
rosa_chinensis	RchiOBHm_Chr2g0152511
rosa_laevigata	RLG00000020642
rosa_multiflora	Rmu_sc0005366.1_g000001 Rmu_sc0027733.1_g000001 Rmu_sc0027737.1_g000001 Rmu_sc0034754.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095640
rosa_rugosa	Rorug02G0434000 Rorug02G0434100 Rorug02G0434200
rosa_samantha	Rh2AG495400 Rh2BG507300 Rh2CG481500 Rh2CG481600 Rh2DG518600
rosa_wichuraiana	Rw2G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	103
AciI	CCGC	2 cut(s)	861, 983
AclWI	GGATC	8 cut(s)	253, 326, 601, 672, 685, 830, 1018, 1082
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	3 cut(s)	1056, 1160, 1172
AcvI	CACGTG	1 cut(s)	1028
AfaI	GTAC	1 cut(s)	779
AfiI	CCNNNNNNNGG	2 cut(s)	958, 1007
AflIII	ACRYGT	1 cut(s)	1025
AgsI	TTSAA	6 cut(s)	48, 637, 791, 974, 1160, 1168
AhdI	GACNNNNNGTC	1 cut(s)	1135
AhlI	ACTAGT	1 cut(s)	85
AjnI	CCWGG	2 cut(s)	145, 625
AjuI	GAANNNNNNNTTGG	2 cut(s)	832, 864
AluBI	AGCT	3 cut(s)	94, 1105, 1180
AluI	AGCT	3 cut(s)	94, 1105, 1180
Alw21I	GWGCWC	1 cut(s)	1107
Alw26I	GTCTC	3 cut(s)	256, 1054, 1176
AlwI	GGATC	8 cut(s)	253, 326, 601, 672, 685, 830, 1018, 1082
AlwNI	CAGNNNCTG	1 cut(s)	626
Ama87I	CYCGRG	1 cut(s)	67
AoxI	GGCC	1 cut(s)	71
ApeKI	GCWGC	4 cut(s)	962, 980, 1031, 1180
ApoI	RAATTY	1 cut(s)	4
ArsI	GACNNNNNNTTYG	2 cut(s)	133, 165
AspS9I	GGNCC	1 cut(s)	71
AsuHPI	GGTGA	4 cut(s)	47, 417, 596, 755
AvaI	CYCGRG	1 cut(s)	67
BamHI	GGATCC	1 cut(s)	677
BanII	GRGCYC	1 cut(s)	1107
BbrPI	CACGTG	1 cut(s)	1028
BbsI	GAAGAC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	1107
BbvI	GCAGC	4 cut(s)	949, 967, 1018, 1167
BccI	CCATC	2 cut(s)	417, 740
BciT130I	CCWGG	2 cut(s)	147, 627
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	3 cut(s)	256, 1054, 1176
BcuI	ACTAGT	1 cut(s)	85
BfaI	CTAG	2 cut(s)	86, 272
BfuAI	ACCTGC	1 cut(s)	103
BisI	GCNGC	4 cut(s)	963, 981, 1032, 1181
BlsI	GCNGC	4 cut(s)	964, 982, 1033, 1182
Bme1390I	CCNGG	2 cut(s)	147, 627
BmeRI	GACNNNNNGTC	1 cut(s)	1135
BmeT110I	CYCGRG	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	3 cut(s)	72, 679, 772
BmrFI	CCNGG	2 cut(s)	147, 627
BmrI	ACTGGG	1 cut(s)	584
BmsI	GCATC	3 cut(s)	382, 789, 922
BmuI	ACTGGG	1 cut(s)	584
BpiI	GAAGAC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	359
BsaAI	YACGTR	1 cut(s)	1028
BsaBI	GATNNNNATC	1 cut(s)	1009
BsaJI	CCNNGG	2 cut(s)	66, 936
BsaXI	ACNNNNNCTCC	2 cut(s)	1012, 1042
Bsc4I	CCNNNNNNNGG	2 cut(s)	958, 1007
Bse1I	ACTGG	4 cut(s)	457, 579, 681, 772
Bse3DI	GCAATG	2 cut(s)	745, 1094
Bse8I	GATNNNNATC	1 cut(s)	1009
BseBI	CCWGG	2 cut(s)	147, 627
BseDI	CCNNGG	2 cut(s)	66, 936
BseGI	GGATG	1 cut(s)	825
BseJI	GATNNNNATC	1 cut(s)	1009
BseLI	CCNNNNNNNGG	2 cut(s)	958, 1007
BseMI	GCAATG	2 cut(s)	745, 1094
BseMII	CTCAG	6 cut(s)	234, 504, 702, 797, 957, 1065
BseNI	ACTGG	4 cut(s)	457, 579, 681, 772
BseRI	GAGGAG	1 cut(s)	474
BseXI	GCAGC	4 cut(s)	949, 967, 1018, 1167
BshFI	GGCC	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	1107
BsiHKCI	CYCGRG	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	858
BslFI	GGGAC	2 cut(s)	631, 763
BslI	CCNNNNNNNGG	2 cut(s)	958, 1007
BsmAI	GTCTC	3 cut(s)	256, 1054, 1176
BsmBI	CGTCTC	1 cut(s)	1054
BsmFI	GGGAC	2 cut(s)	631, 763
BsmI	GAATGC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	73
BsoBI	CYCGRG	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	1107
Bsp1407I	TGTACA	1 cut(s)	777
BspACI	CCGC	2 cut(s)	861, 983
BspANI	GGCC	1 cut(s)	73
BspCNI	CTCAG	6 cut(s)	233, 505, 701, 798, 956, 1064
BspHI	TCATGA	2 cut(s)	79, 235
BspLI	GGNNCC	3 cut(s)	72, 679, 772
BspMI	ACCTGC	1 cut(s)	103
BspPI	GGATC	8 cut(s)	253, 326, 601, 672, 685, 830, 1018, 1082
BsrDI	GCAATG	2 cut(s)	745, 1094
BsrGI	TGTACA	1 cut(s)	777
BsrI	ACTGG	4 cut(s)	457, 579, 681, 772
BssECI	CCNNGG	2 cut(s)	66, 936
Bst2UI	CCWGG	2 cut(s)	147, 627
Bst4CI	ACNGT	2 cut(s)	673, 757
Bst6I	CTCTTC	3 cut(s)	366, 1060, 1179
BstAUI	TGTACA	1 cut(s)	777
BstBAI	YACGTR	1 cut(s)	1028
BstC8I	GCNNGC	1 cut(s)	996
BstDEI	CTNAG	6 cut(s)	220, 513, 688, 806, 943, 1051
BstF5I	GGATG	1 cut(s)	825
BstMAI	GTCTC	3 cut(s)	256, 1054, 1176
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 867
BstNI	CCWGG	2 cut(s)	147, 627
BstSCI	CCNGG	2 cut(s)	145, 625
BstV1I	GCAGC	4 cut(s)	949, 967, 1018, 1167
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	2 cut(s)	593, 677
BstXI	CCANNNNNNTGG	1 cut(s)	530
BstYI	RGATCY	2 cut(s)	593, 677
BsuRI	GGCC	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	825
BtsIMutI	CAGTG	1 cut(s)	572
BveI	ACCTGC	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	996
CaiI	CAGNNNCTG	1 cut(s)	626
CciI	TCATGA	2 cut(s)	79, 235
Cfr13I	GGNCC	1 cut(s)	71
CseI	GACGC	1 cut(s)	1125
CsiI	ACCWGGT	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	778
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviAII	CATG	4 cut(s)	80, 185, 236, 256
CviQI	GTAC	1 cut(s)	778
DdeI	CTNAG	6 cut(s)	220, 513, 688, 806, 943, 1051
DriI	GACNNNNNGTC	1 cut(s)	1135
Eam1104I	CTCTTC	3 cut(s)	366, 1060, 1179
Eam1105I	GACNNNNNGTC	1 cut(s)	1135
EarI	CTCTTC	3 cut(s)	366, 1060, 1179
Ecl136II	GAGCTC	1 cut(s)	1105
Eco24I	GRGCYC	1 cut(s)	1107
Eco53kI	GAGCTC	1 cut(s)	1105
Eco57I	CTGAAG	3 cut(s)	1056, 1160, 1172
Eco72I	CACGTG	1 cut(s)	1028
Eco88I	CYCGRG	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	1105
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	145, 625
EcoT38I	GRGCYC	1 cut(s)	1107
Esp3I	CGTCTC	1 cut(s)	1054
FaeI	CATG	4 cut(s)	83, 188, 239, 259
FaqI	GGGAC	2 cut(s)	631, 763
FatI	CATG	4 cut(s)	79, 184, 235, 255
FauI	CCCGC	1 cut(s)	976
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	4 cut(s)	963, 981, 1032, 1181
FokI	GGATG	1 cut(s)	832
FriOI	GRGCYC	1 cut(s)	1107
Fsp4HI	GCNGC	4 cut(s)	963, 981, 1032, 1181
FspBI	CTAG	2 cut(s)	86, 272
GluI	GCNGC	4 cut(s)	963, 981, 1032, 1181
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	1 cut(s)	858
HgaI	GACGC	1 cut(s)	1125
Hin1II	CATG	4 cut(s)	83, 188, 239, 259
HinfI	GANTC	7 cut(s)	164, 232, 278, 637, 724, 941, 974
HpaII	CCGG	1 cut(s)	858
HphI	GGTGA	4 cut(s)	47, 417, 596, 755
Hpy166II	GTNNAC	1 cut(s)	1042
Hpy188I	TCNGA	7 cut(s)	180, 316, 498, 807, 946, 1054, 1074
Hpy188III	TCNNGA	6 cut(s)	80, 236, 272, 467, 600, 1008
Hpy8I	GTNNAC	1 cut(s)	1042
HpyAV	CCTTC	3 cut(s)	54, 333, 573
HpyCH4III	ACNGT	2 cut(s)	673, 757
HpyCH4IV	ACGT	1 cut(s)	1027
HpyCH4V	TGCA	4 cut(s)	12, 124, 1099, 1183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 867
HpyF3I	CTNAG	6 cut(s)	220, 513, 688, 806, 943, 1051
HpySE526I	ACGT	1 cut(s)	1027
Hsp92II	CATG	4 cut(s)	83, 188, 239, 259
Ksp22I	TGATCA	1 cut(s)	187
Lsp1109I	GCAGC	4 cut(s)	949, 967, 1018, 1167
LweI	GCATC	3 cut(s)	382, 789, 922
MabI	ACCWGGT	1 cut(s)	145
MaeI	CTAG	2 cut(s)	86, 272
MaeII	ACGT	1 cut(s)	1027
MaeIII	GTNAC	1 cut(s)	683
MboII	GAAGA	8 cut(s)	287, 383, 414, 588, 846, 1077, 1096, 1166
MfeI	CAATTG	1 cut(s)	1155
MflI	RGATCY	2 cut(s)	593, 677
MhlI	GDGCHC	1 cut(s)	1107
MluCI	AATT	8 cut(s)	4, 19, 226, 362, 553, 563, 969, 1155
MlyI	GAGTC	3 cut(s)	173, 733, 935
MmeI	TCCRAC	3 cut(s)	533, 655, 863
MseI	TTAA	2 cut(s)	153, 384
MspA1I	CMGCKG	1 cut(s)	1180
MspI	CCGG	1 cut(s)	858
MspR9I	CCNGG	2 cut(s)	147, 627
MunI	CAATTG	1 cut(s)	1155
Mva1269I	GAATGC	1 cut(s)	12
MvaI	CCWGG	2 cut(s)	147, 627
MwoI	GCNNNNNNNGC	2 cut(s)	401, 867
NlaIII	CATG	4 cut(s)	83, 188, 239, 259
NlaIV	GGNNCC	3 cut(s)	72, 679, 772
NmeAIII	GCCGAG	1 cut(s)	961
PagI	TCATGA	2 cut(s)	79, 235
PcsI	WCGNNNNNNNCGW	1 cut(s)	1133
PctI	GAATGC	1 cut(s)	12
PfeI	GAWTC	4 cut(s)	232, 278, 637, 974
PkrI	GCNGC	4 cut(s)	964, 982, 1033, 1182
PleI	GAGTC	3 cut(s)	172, 732, 935
PmaCI	CACGTG	1 cut(s)	1028
PmlI	CACGTG	1 cut(s)	1028
PpsI	GAGTC	3 cut(s)	172, 732, 935
Ppu21I	YACGTR	1 cut(s)	1028
Psp124BI	GAGCTC	1 cut(s)	1107
Psp6I	CCWGG	2 cut(s)	145, 625
PspCI	CACGTG	1 cut(s)	1028
PspGI	CCWGG	2 cut(s)	145, 625
PspN4I	GGNNCC	3 cut(s)	72, 679, 772
PspPI	GGNCC	1 cut(s)	71
PstNI	CAGNNNCTG	1 cut(s)	626
PsuI	RGATCY	2 cut(s)	593, 677
PvuII	CAGCTG	1 cut(s)	1180
RsaI	GTAC	1 cut(s)	779
RsaNI	GTAC	1 cut(s)	778
SacI	GAGCTC	1 cut(s)	1107
SaqAI	TTAA	2 cut(s)	153, 384
SatI	GCNGC	4 cut(s)	963, 981, 1032, 1181
Sau96I	GGNCC	1 cut(s)	71
SchI	GAGTC	3 cut(s)	173, 733, 935
ScrFI	CCNGG	2 cut(s)	147, 627
SduI	GDGCHC	1 cut(s)	1107
SexAI	ACCWGGT	1 cut(s)	145
SfaNI	GCATC	3 cut(s)	382, 789, 922
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
SpeI	ACTAGT	1 cut(s)	85
Sse9I	AATT	8 cut(s)	4, 19, 226, 362, 553, 563, 969, 1155
SsiI	CCGC	2 cut(s)	861, 983
SspMI	CTAG	2 cut(s)	86, 272
SstI	GAGCTC	1 cut(s)	1107
StyD4I	CCNGG	2 cut(s)	145, 625
TaaI	ACNGT	2 cut(s)	673, 757
TaiI	ACGT	1 cut(s)	1030
TaqI	TCGA	2 cut(s)	139, 734
TasI	AATT	8 cut(s)	4, 19, 226, 362, 553, 563, 969, 1155
TatI	WGTACW	1 cut(s)	777
TfiI	GAWTC	4 cut(s)	232, 278, 637, 974
Tru1I	TTAA	2 cut(s)	153, 384
Tru9I	TTAA	2 cut(s)	153, 384
TscAI	CASTG	1 cut(s)	579
TseI	GCWGC	4 cut(s)	962, 980, 1031, 1180
TspDTI	ATGAA	4 cut(s)	17, 96, 224, 840
TspGWI	ACGGA	1 cut(s)	1142
TspRI	CASTG	1 cut(s)	579
XapI	RAATTY	1 cut(s)	4
XbaI	TCTAGA	1 cut(s)	271
XspI	CTAG	2 cut(s)	86, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.