AT2G44480

Glycosyl hydrolase family 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003709
Physical Location & Seq
Forward (+)
18359663 .. 18363346
3684 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G44480.5

Sequence Viewer

Length: 1554 bp
ATGGCCATCAAATCCATATTTATCATCATCATCATCAGCATCATCACATCAATATCTGAACTTTATGCTTTGGATCCTTCGTTTCTTCGTCTTTCGACCTCTCTCCAAAGAAGTAGCTTTCCTCAAGATTTTCGGTTTGGTGCAGCTTCGAGTGCTTATCAGAGTGAAGGAGCAGCCAACGTTGATGGAAGAGAACCAAGCATATGGGATACGTTTACTAAACAATATCCAGAAAAGATTTCAGATGGTAGCAATGGCGACGTTGCAGACGAATTTTATTACCGTTTCAAGGAGGACGTGGCACATATGAAAGAAATAGGGCTGGACTCATTTAGGTTTTCGATTTCTTGGTCCAGAATACTACCTCGAGGTACGGTTGCTGGAGGAGTAAATCAGGCAGGAATTAACTTCTACAATCATCTCATCAATGAACTCATTTCAAATGGTATAAGGCCTCTGGTTACTCTGTTTCACTGGGATACACCTCAGGCACTTGAAGATGAATATGGCGGGTTCTTAAACCCACAAATCGTGAAAGATTTCGTAGAATATGTGGATATATGTTTCAAAGAGTTTGGAGATAGAGTGAAGGAGTGGATCACAATCAACGAGCCTAACATGTTCGCAGTGTTAGGTTACAATGTCGGTAATATTGCTCCGGGGCGTTGTTCGAGCTATGTTCAAAACTGCACGGTTGGGAACTCAGCCACTGAGCCATATCTCGTGGCTCATTACTTAATCCTTTCTCATGCCGCTACAGTCCAACTCTATAGAGAGAAATATCAGAGTTTTCATGGAGGGACCATAGGAATGACTATTCAAACATATTGGATGATTCCAAAATATAACACTCCTGCTTGTAGAGAAGCTGCCAAAAGGGCTCTTGACTTCTTCTTCGGATGGTTTGCTGATCCGATCACTTACGGAGATTATCCAAAAACAATGAGAGAGTTGGTGGGAAATAGACTCCCAAAATTCACAAAAAAGCAGTCAAAAATGGTGAGAGGATCCTTTGACTTTTTTGGACTCAACTATTACACTTCAAGATACGTTGAAGATGTTATGTTCTACGCTAACACCAATCTTAGTTACACAACAGATAGTCGCGTAAATCAAACAACGGAGAAAAATGGAGTTCCTGTGGGTGAACCGACGAGTGCTGATTGGCTCTTTATATGTCCAGAAGGGTTTCAAGATGTTCTATTATACATAAAATCGAAGTTTCAAAATCCAGTAATCCTCGTCACTGAGAATGGAATGCCTAGCGAGAATGACAAATCATTGTCCGTGAACATAGCACTCAATGACGAGGCAAAGATCAAATATCACCAACTCCATCTCACTGCTCTTCTAGAAGCAGTCAGTCAAGGAGCAGATGTGAGAGGATATTATATATGGTCATTAATGGATGATTTTGAGTGGGAATTTGGTTACAAATATAGATACGGATTGGTCTACGTTGATTTTCAAGATGGACTTAAACGACACCTCAAGAGTTCTGCTCTTTGGTACCATCATTTTCTATCCAACTCATCCTCCTATCAAATGGACTAG

Protein Analysis

517

Amino Acids

59.12

Weight (kDa)

5.55

Isoelectric Point (pI)

32.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 2 - 304 3.7e-72 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 366
Acc65I GGTACC 1 cut(s) 1509
AccB1I GGYRCC 1 cut(s) 1509
AccI GTMKAC 1 cut(s) 1455
AccII CGCG 1 cut(s) 1107
AciI CCGC 2 cut(s) 510, 753
AclI AACGTT 1 cut(s) 180
AclWI GGATC 6 cut(s) 68, 81, 605, 905, 1002, 1015
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 272, 974, 1424
AfaI GTAC 2 cut(s) 373, 1511
AfiI CCNNNNNNNGG 1 cut(s) 289
AflIII ACRYGT 1 cut(s) 618
AjiI CACGTC 1 cut(s) 298
AluBI AGCT 4 cut(s) 117, 146, 675, 869
AluI AGCT 4 cut(s) 117, 146, 675, 869
AlwI GGATC 6 cut(s) 68, 81, 605, 905, 1002, 1015
AlwNI CAGNNNCTG 1 cut(s) 710
Ama87I CYCGRG 1 cut(s) 366
AoxI GGCC 2 cut(s) 3, 452
ApeKI GCWGC 3 cut(s) 143, 173, 869
ApoI RAATTY 3 cut(s) 272, 974, 1424
ArsI GACNNNNNNTTYG 4 cut(s) 878, 910, 974, 1006
AseI ATTAAT 1 cut(s) 1403
Asp700I GAANNNNTTC 2 cut(s) 539, 1188
Asp718I GGTACC 1 cut(s) 1509
AspS9I GGNCC 2 cut(s) 351, 801
AsuC2I CCSGG 1 cut(s) 660
AsuHPI GGTGA 3 cut(s) 1012, 1157, 1319
AvaI CYCGRG 1 cut(s) 366
AvaII GGWCC 2 cut(s) 351, 801
AxyI CCTNAGG 1 cut(s) 486
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 2 cut(s) 73, 1007
BanI GGYRCC 1 cut(s) 1509
BanII GRGCYC 1 cut(s) 883
BauI CACGAG 1 cut(s) 722
BbvI GCAGC 3 cut(s) 155, 185, 856
BccI CCATC 7 cut(s) 14, 179, 239, 894, 1344, 1466, 1521
BciVI GTATCC 2 cut(s) 202, 472
BcnI CCSGG 1 cut(s) 660
BfaI CTAG 3 cut(s) 1263, 1352, 1552
BfmI CTRYAG 2 cut(s) 756, 769
BfuI GTATCC 2 cut(s) 202, 472
BglI GCCNNNNNGGC 1 cut(s) 878
BisI GCNGC 4 cut(s) 144, 174, 753, 870
BlsI GCNGC 4 cut(s) 145, 175, 754, 871
Bme1390I CCNGG 1 cut(s) 660
Bme18I GGWCC 2 cut(s) 351, 801
BmeT110I CYCGRG 1 cut(s) 366
BmgBI CACGTC 1 cut(s) 298
BmgT120I GGNCC 2 cut(s) 351, 801
BmiI GGNNCC 4 cut(s) 75, 802, 1009, 1511
BmrFI CCNGG 1 cut(s) 660
BmrI ACTGGG 1 cut(s) 484
BmsI GCATC 1 cut(s) 48
BmuI ACTGGG 1 cut(s) 484
BplI GAGNNNNNCTC 2 cut(s) 1486, 1518
BpmI CTGGAG 1 cut(s) 402
BpuEI CTTGAG 2 cut(s) 108, 1475
BpuMI CCSGG 1 cut(s) 660
BsaBI GATNNNNATC 1 cut(s) 602
BsaJI CCNNGG 1 cut(s) 659
BsaXI ACNNNNNCTCC 8 cut(s) 570, 600, 1125, 1155, 1362, 1392, 1520, 1550
Bsc4I CCNNNNNNNGG 1 cut(s) 289
Bse1I ACTGG 2 cut(s) 479, 1232
Bse21I CCTNAGG 1 cut(s) 486
Bse3DI GCAATG 1 cut(s) 259
Bse8I GATNNNNATC 1 cut(s) 602
BseDI CCNNGG 1 cut(s) 659
BseGI GGATG 4 cut(s) 837, 905, 1414, 1532
BseJI GATNNNNATC 1 cut(s) 602
BseLI CCNNNNNNNGG 1 cut(s) 289
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 4 cut(s) 500, 702, 717, 1239
BseNI ACTGG 2 cut(s) 479, 1232
BseRI GAGGAG 1 cut(s) 399
BseXI GCAGC 3 cut(s) 155, 185, 856
BsgI GTGCAG 2 cut(s) 162, 673
Bsh1236I CGCG 1 cut(s) 1107
BshFI GGCC 2 cut(s) 5, 454
BshNI GGYRCC 1 cut(s) 1509
BsiHKCI CYCGRG 1 cut(s) 366
BsiSI CCGG 1 cut(s) 659
BslFI GGGAC 1 cut(s) 814
BslI CCNNNNNNNGG 1 cut(s) 289
BsmFI GGGAC 1 cut(s) 814
BsmI GAATGC 1 cut(s) 1263
BsnI GGCC 2 cut(s) 5, 454
BsoBI CYCGRG 1 cut(s) 366
Bsp1286I GDGCHC 1 cut(s) 883
Bsp143I GATC 6 cut(s) 73, 597, 910, 915, 1007, 1317
BspACI CCGC 2 cut(s) 510, 753
BspANI GGCC 2 cut(s) 5, 454
BspCNI CTCAG 4 cut(s) 499, 703, 716, 1240
BspFNI CGCG 1 cut(s) 1107
BspLI GGNNCC 4 cut(s) 75, 802, 1009, 1511
BspPI GGATC 6 cut(s) 68, 81, 605, 905, 1002, 1015
BspQI GCTCTTC 1 cut(s) 1353
BspT107I GGYRCC 1 cut(s) 1509
BsrDI GCAATG 1 cut(s) 259
BsrI ACTGG 2 cut(s) 479, 1232
BssECI CCNNGG 1 cut(s) 659
BssMI GATC 6 cut(s) 73, 597, 910, 915, 1007, 1317
BssSI CACGAG 1 cut(s) 722
Bst2BI CACGAG 1 cut(s) 722
Bst4CI ACNGT 4 cut(s) 284, 376, 694, 760
Bst6I CTCTTC 2 cut(s) 184, 1353
BstDEI CTNAG 5 cut(s) 486, 703, 711, 1085, 1248
BstF5I GGATG 4 cut(s) 837, 905, 1414, 1532
BstFNI CGCG 1 cut(s) 1107
BstKTI GATC 6 cut(s) 76, 600, 913, 918, 1010, 1320
BstMBI GATC 6 cut(s) 73, 597, 910, 915, 1007, 1317
BstMWI GCNNNNNNNGC 2 cut(s) 152, 878
BstNSI RCATGY 1 cut(s) 622
BstSCI CCNGG 1 cut(s) 658
BstSFI CTRYAG 2 cut(s) 756, 769
BstUI CGCG 1 cut(s) 1107
BstV1I GCAGC 3 cut(s) 155, 185, 856
BstX2I RGATCY 2 cut(s) 73, 1007
BstXI CCANNNNNNTGG 1 cut(s) 204
BstYI RGATCY 2 cut(s) 73, 1007
Bsu36I CCTNAGG 1 cut(s) 486
BsuI GTATCC 2 cut(s) 202, 472
BsuRI GGCC 2 cut(s) 5, 454
BtrI CACGTC 1 cut(s) 298
BtsCI GGATG 4 cut(s) 837, 905, 1414, 1532
BtsI GCAGTG 2 cut(s) 633, 1341
BtsIMutI CAGTG 5 cut(s) 472, 633, 708, 1245, 1341
CaiI CAGNNNCTG 1 cut(s) 710
Cfr13I GGNCC 2 cut(s) 351, 801
Csp6I GTAC 2 cut(s) 372, 1510
CviAII CATG 3 cut(s) 619, 749, 794
CviQI GTAC 2 cut(s) 372, 1510
DdeI CTNAG 5 cut(s) 486, 703, 711, 1085, 1248
DpnI GATC 6 cut(s) 75, 599, 912, 917, 1009, 1319
DpnII GATC 6 cut(s) 73, 597, 910, 915, 1007, 1317
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 184, 1353
EarI CTCTTC 2 cut(s) 184, 1353
Eco147I AGGCCT 1 cut(s) 454
Eco24I GRGCYC 1 cut(s) 883
Eco47I GGWCC 2 cut(s) 351, 801
Eco81I CCTNAGG 1 cut(s) 486
Eco88I CYCGRG 1 cut(s) 366
EcoT38I GRGCYC 1 cut(s) 883
FaeI CATG 3 cut(s) 622, 752, 797
FalI AAGNNNNNCTT 2 cut(s) 1461, 1493
FaqI GGGAC 1 cut(s) 814
FatI CATG 3 cut(s) 618, 748, 793
FauI CCCGC 1 cut(s) 503
FauNDI CATATG 2 cut(s) 203, 306
FblI GTMKAC 1 cut(s) 1455
Fnu4HI GCNGC 4 cut(s) 144, 174, 753, 870
FokI GGATG 4 cut(s) 844, 912, 1421, 1519
FriOI GRGCYC 1 cut(s) 883
Fsp4HI GCNGC 4 cut(s) 144, 174, 753, 870
FspBI CTAG 3 cut(s) 1263, 1352, 1552
GluI GCNGC 4 cut(s) 144, 174, 753, 870
GsuI CTGGAG 1 cut(s) 402
HaeIII GGCC 2 cut(s) 5, 454
HapII CCGG 1 cut(s) 659
Hin1II CATG 3 cut(s) 622, 752, 797
HinfI GANTC 4 cut(s) 326, 835, 966, 1026
HpaII CCGG 1 cut(s) 659
HphI GGTGA 3 cut(s) 1012, 1157, 1319
Hpy166II GTNNAC 4 cut(s) 216, 1148, 1291, 1456
Hpy188I TCNGA 6 cut(s) 58, 162, 244, 786, 899, 915
Hpy8I GTNNAC 4 cut(s) 216, 1148, 1291, 1456
Hpy99I CGWCG 2 cut(s) 263, 1156
HpyAV CCTTC 4 cut(s) 87, 161, 583, 1178
HpyCH4III ACNGT 4 cut(s) 284, 376, 694, 760
HpyCH4IV ACGT 6 cut(s) 180, 212, 261, 297, 1050, 1458
HpyCH4V TGCA 3 cut(s) 143, 266, 690
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 878
HpyF3I CTNAG 5 cut(s) 486, 703, 711, 1085, 1248
HpySE526I ACGT 6 cut(s) 180, 212, 261, 297, 1050, 1458
Hsp92II CATG 3 cut(s) 622, 752, 797
KpnI GGTACC 1 cut(s) 1513
Kzo9I GATC 6 cut(s) 73, 597, 910, 915, 1007, 1317
LguI GCTCTTC 1 cut(s) 1353
LmnI GCTCC 3 cut(s) 170, 661, 1370
Lsp1109I GCAGC 3 cut(s) 155, 185, 856
LweI GCATC 1 cut(s) 48
MaeI CTAG 3 cut(s) 1263, 1352, 1552
MaeII ACGT 6 cut(s) 180, 212, 261, 297, 1050, 1458
MaeIII GTNAC 5 cut(s) 460, 635, 1088, 1243, 1430
MalI GATC 6 cut(s) 75, 599, 912, 917, 1009, 1319
MboI GATC 6 cut(s) 73, 597, 910, 915, 1007, 1317
MboII GAAGA 7 cut(s) 77, 201, 509, 883, 886, 1067, 1340
MflI RGATCY 2 cut(s) 73, 1007
MhlI GDGCHC 1 cut(s) 883
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 272, 402, 974, 1424
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 320, 960, 1020
MmeI TCCRAC 2 cut(s) 787, 1551
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 2 cut(s) 539, 1188
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 405, 518, 737, 1403, 1479
MslI CAYNNNNRTG 1 cut(s) 809
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 659
MspR9I CCNGG 1 cut(s) 660
Mva1269I GAATGC 1 cut(s) 1263
MvnI CGCG 1 cut(s) 1107
MwoI GCNNNNNNNGC 2 cut(s) 152, 878
NciI CCSGG 1 cut(s) 660
NdeI CATATG 2 cut(s) 203, 306
NdeII GATC 6 cut(s) 73, 597, 910, 915, 1007, 1317
NlaIII CATG 3 cut(s) 622, 752, 797
NlaIV GGNNCC 4 cut(s) 75, 802, 1009, 1511
NmuCI GTSAC 1 cut(s) 1243
NspI RCATGY 1 cut(s) 622
PaeR7I CTCGAG 1 cut(s) 366
PceI AGGCCT 1 cut(s) 454
PciI ACATGT 1 cut(s) 618
PciSI GCTCTTC 1 cut(s) 1353
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PctI GAATGC 1 cut(s) 1263
PdmI GAANNNNTTC 2 cut(s) 539, 1188
PfeI GAWTC 1 cut(s) 835
PkrI GCNGC 4 cut(s) 145, 175, 754, 871
PleI GAGTC 3 cut(s) 320, 960, 1020
PpsI GAGTC 3 cut(s) 320, 960, 1020
PscI ACATGT 1 cut(s) 618
PshBI ATTAAT 1 cut(s) 1403
Psp1406I AACGTT 1 cut(s) 180
PspN4I GGNNCC 4 cut(s) 75, 802, 1009, 1511
PspPI GGNCC 2 cut(s) 351, 801
PspXI VCTCGAGB 1 cut(s) 366
PstNI CAGNNNCTG 1 cut(s) 710
PsuI RGATCY 2 cut(s) 73, 1007
RsaI GTAC 2 cut(s) 373, 1511
RsaNI GTAC 2 cut(s) 372, 1510
RseI CAYNNNNRTG 1 cut(s) 809
SapI GCTCTTC 1 cut(s) 1353
SaqAI TTAA 5 cut(s) 405, 518, 737, 1403, 1479
SatI GCNGC 4 cut(s) 144, 174, 753, 870
Sau3AI GATC 6 cut(s) 73, 597, 910, 915, 1007, 1317
Sau96I GGNCC 2 cut(s) 351, 801
SchI GAGTC 3 cut(s) 320, 960, 1020
ScrFI CCNGG 1 cut(s) 660
SduI GDGCHC 1 cut(s) 883
SfaNI GCATC 1 cut(s) 48
SfcI CTRYAG 2 cut(s) 756, 769
Sfr274I CTCGAG 1 cut(s) 366
SinI GGWCC 2 cut(s) 351, 801
SlaI CTCGAG 1 cut(s) 366
SmiMI CAYNNNNRTG 1 cut(s) 809
SmlI CTYRAG 3 cut(s) 123, 366, 1490
SmoI CTYRAG 3 cut(s) 123, 366, 1490
Sse9I AATT 4 cut(s) 272, 402, 974, 1424
SseBI AGGCCT 1 cut(s) 454
SsiI CCGC 2 cut(s) 510, 753
SspI AATATT 1 cut(s) 652
SspMI CTAG 3 cut(s) 1263, 1352, 1552
StuI AGGCCT 1 cut(s) 454
StyD4I CCNGG 1 cut(s) 658
TaaI ACNGT 4 cut(s) 284, 376, 694, 760
TaiI ACGT 6 cut(s) 183, 215, 264, 300, 1053, 1461
TaqI TCGA 6 cut(s) 95, 149, 341, 367, 671, 1217
TasI AATT 4 cut(s) 272, 402, 974, 1424
TauI GCSGC 1 cut(s) 755
TfiI GAWTC 1 cut(s) 835
Tru1I TTAA 5 cut(s) 405, 518, 737, 1403, 1479
Tru9I TTAA 5 cut(s) 405, 518, 737, 1403, 1479
TscAI CASTG 5 cut(s) 479, 633, 715, 1252, 1348
TseFI GTSAC 1 cut(s) 1243
TseI GCWGC 3 cut(s) 143, 173, 869
Tsp45I GTSAC 1 cut(s) 1243
TspDTI ATGAA 4 cut(s) 323, 444, 516, 782
TspGWI ACGGA 4 cut(s) 939, 1136, 1276, 1461
TspRI CASTG 5 cut(s) 479, 633, 715, 1252, 1348
VpaK11BI GGWCC 2 cut(s) 351, 801
VspI ATTAAT 1 cut(s) 1403
XapI RAATTY 3 cut(s) 272, 974, 1424
XbaI TCTAGA 1 cut(s) 1351
XceI RCATGY 1 cut(s) 622
XhoI CTCGAG 1 cut(s) 366
XmiI GTMKAC 1 cut(s) 1455
XmnI GAANNNNTTC 2 cut(s) 539, 1188
XspI CTAG 3 cut(s) 1263, 1352, 1552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.