Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003709

Physical Location & Seq

Genomic Coordinates Forward (+)

497155 .. 501595

Gene Structure 4441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G000350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGGCATTTGGAGGTTCTGTGTTCTTGTCTATGCTCCTATCTTTGGCTGCAGCTGCTTGCTTCTCCGTTGGCACTTCCGATGCTTATTATATCCCTTTTAACCGAAGCAGTTTTCCCACTGGATTCCTTTTTGGTGCTGGTTCAGCTGCTTATCAGTCTGAAGGAGCAGCATTTCTAGATGGAAGGGGACCTAGCATCTGGGATACTTTCGTTAGGAAACATCCAGAAAAAATATGGGATCACAGCACGGGAGACGTAGCTGATGACTTTTATCACCATTATAAGGAGGATATAAAGTTGATGAAGAAAATTGGGTTGGACTCTTTCAGATTCTCAATTTCATGGCCCAGATTACTTCCCAAGGGAAAACTTAGTGGAGGAGTGAACCCACTTGGTGTCAAATTCTACAATAATCTCATCAACGAGCTCGTATCCAATGGTATCAAGCCCTTGGTGACTTTGCTCCATTATGATCCTCCCCAAGCACTTGATGATCTGTATGGCGGGTTCTTAAGCCCTAACATAATAAATGATTATGGAGATTATGTGGATTTCTGCTTCAAGACATTTGGTGATCGAGTGAAGCACTGGGTCACAATGAACGAACCAAACGGATTTGCTATTAATGCCTACAGCGGCGGTACCTTTGCACCAGGTCGGTGTTCTAACTATGAAGGAAACTGCACTTCCGGTAACTCTGCGACTGAACCCTACATTGTGGCACACCATTTGCTTCTTGCTCATTCAACTGCTGTCAAAATATACAAGGACAAATATCAGGCTTCCCAAAAGGGACAGATCGGGATTACCATAGTCACTCACTGGTGGAAACCTAAGTTCCCAGAACAGCTGGCTAGCCGGAAAGCCACCCTTAGATCACTTGCCTTTATGTTTGGATGGTTTGCGGATCCTATATTTCATGGTGATTATCCGAAGGTCATGCGATCTTTGCTCGGGAATAGATTGCCGAAATTTACAGAAGCTGAATCGAAGCAGATAAAAGGGTCCCTCGATTTTCTTGGGTTTAATTATTACACAACATATTATACAGTAGATGAACCGGCTTCATCCAACTTTGTCAACCATAGTTGGAGTGCAGACAGACAAATCGCTGCTTCTACTACTGATAGAAATGGGGCTCTTATTGGTGCAGCGACTGATCTGGATTGGCTTTTCGTTTATCCGAAGGGGATCAGAGAGGTTCTTGTGTATATAAAGGAAAAGTACAATAACCCTGACATTTACATAACTGAGAATGGATATGCGTATGGATATAATGCCTCAATGCCAATTCAAGAAGCTCGTAAGGATAATTTGAGAATAAGATACCATCACGACCATCTGTGGTATCTTTTGAAAGCTATTAAGGATGGGGTTAAAGTGAAGGGATACTATGCGTGGTCATTTTGGGATGACTTCGAATGGGATGCTGGTTACACAGTTGGGTTTGGCCTAACATTAGTTGACGTCAAGGATAATCTGAGAAGATACCTCAAATATTCTGCCTATTGGTTCAAGATGTTCCTCCTGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

511

Amino Acids

58.02

Weight (kDa)

8.32

Isoelectric Point (pI)

24.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	36 - 507	1.8e-149	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44480 AT2G44480 AT2G44480 AT2G44480 AT2G44480
fragaria_vesca	FvH4_7g00214 FvH4_7g00214 FvH4_7g00214 FvH4_7g00214 FvH4_7g00250 FvH4_7g00270
malus_domestica	MD07G1003400.v1.1
prunus_persica	Prupe.2G005100_v2.0.a1
pyrus_communis	pycom07g00340
rosa_chinensis	RchiOBHm_Chr1g0313661 RchiOBHm_Chr1g0313711 RchiOBHm_Chr1g0313741
rosa_laevigata	RLG00000030780 RLG00000030783 RLG00000030785
rosa_multiflora	Rmu_sc0009740.1_g000006 Rmu_ssc0000027.1_g000024
rosa_roxburghii	Rroxscaffold_4G00332110 Rroxscaffold_4G00332130
rosa_rugosa	RorugPtG0005800 RorugPtG0005900.1 RorugPtG0006000.1
rosa_samantha	Rh1AG005800 Rh1CG008900 Rh1CG009000 Rh1DG004000 Rh1DG004200
rosa_wichuraiana	Rw1G000340 Rw1G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
AatII	GACGTC	1 cut(s)	1470
Acc65I	GGTACC	1 cut(s)	641
AccB1I	GGYRCC	1 cut(s)	641
AciI	CCGC	4 cut(s)	504, 636, 639, 905
AclWI	GGATC	5 cut(s)	246, 467, 902, 915, 1199
AcsI	RAATTY	2 cut(s)	401, 971
AcuI	CTGAAG	1 cut(s)	180
AcyI	GRCGYC	1 cut(s)	1467
AdeI	CACNNNGTG	1 cut(s)	395
AfaI	GTAC	2 cut(s)	643, 1226
AfiI	CCNNNNNNNGG	2 cut(s)	43, 283
AflII	CTTAAG	1 cut(s)	511
AgsI	TTSAA	5 cut(s)	562, 747, 1295, 1357, 1516
AjnI	CCWGG	1 cut(s)	652
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AluBI	AGCT	8 cut(s)	53, 146, 260, 427, 850, 983, 1301, 1361
AluI	AGCT	8 cut(s)	53, 146, 260, 427, 850, 983, 1301, 1361
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	5 cut(s)	246, 467, 902, 915, 1199
AlwNI	CAGNNNCTG	2 cut(s)	983, 1157
Ama87I	CYCGRG	1 cut(s)	953
AoxI	GGCC	2 cut(s)	344, 1450
ApeKI	GCWGC	7 cut(s)	47, 50, 53, 146, 167, 1112, 1151
ApoI	RAATTY	2 cut(s)	401, 971
AseI	ATTAAT	1 cut(s)	624
Asp718I	GGTACC	1 cut(s)	641
AspS9I	GGNCC	3 cut(s)	188, 345, 1005
AsuHPI	GGTGA	4 cut(s)	266, 466, 584, 935
AsuII	TTCGAA	1 cut(s)	1419
AsuNHI	GCTAGC	1 cut(s)	854
AvaI	CYCGRG	1 cut(s)	953
AvaII	GGWCC	2 cut(s)	188, 1005
BaeI	ACNNNNGTAYC	2 cut(s)	195, 228
BamHI	GGATCC	1 cut(s)	907
BanI	GGYRCC	1 cut(s)	641
BanII	GRGCYC	2 cut(s)	429, 1141
Bbv12I	GWGCWC	1 cut(s)	429
BbvI	GCAGC	7 cut(s)	34, 40, 62, 133, 179, 1099, 1163
BccI	CCATC	5 cut(s)	173, 891, 1338, 1347, 1364
BcgI	CGANNNNNNTGC	4 cut(s)	922, 956, 1409, 1443
BciT130I	CCWGG	1 cut(s)	654
BciVI	GTATCC	3 cut(s)	196, 442, 1382
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	3 cut(s)	176, 192, 855
BfmI	CTRYAG	2 cut(s)	48, 631
BfrI	CTTAAG	1 cut(s)	511
BfuI	GTATCC	3 cut(s)	196, 442, 1382
BisI	GCNGC	8 cut(s)	48, 51, 54, 147, 168, 637, 1113, 1152
BlsI	GCNGC	8 cut(s)	49, 52, 55, 148, 169, 638, 1114, 1153
Bme1390I	CCNGG	1 cut(s)	654
Bme18I	GGWCC	2 cut(s)	188, 1005
BmeT110I	CYCGRG	1 cut(s)	953
BmgT120I	GGNCC	3 cut(s)	188, 345, 1005
BmiI	GGNNCC	5 cut(s)	189, 643, 909, 1006, 1007
BmrFI	CCNGG	1 cut(s)	654
BmrI	ACTGGG	1 cut(s)	598
BmsI	GCATC	3 cut(s)	70, 204, 1417
BmtI	GCTAGC	1 cut(s)	858
BmuI	ACTGGG	1 cut(s)	598
Bpu14I	TTCGAA	1 cut(s)	1419
BsaHI	GRCGYC	1 cut(s)	1467
BsaJI	CCNNGG	2 cut(s)	360, 450
BsaWI	WCCGGW	1 cut(s)	689
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 531, 561
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 283
Bse118I	RCCGGY	1 cut(s)	1060
Bse1I	ACTGG	3 cut(s)	124, 593, 827
BseBI	CCWGG	1 cut(s)	654
BseDI	CCNNGG	2 cut(s)	360, 450
BseGI	GGATG	6 cut(s)	220, 902, 1067, 1375, 1417, 1432
BseLI	CCNNNNNNNGG	2 cut(s)	43, 283
BseMII	CTCAG	2 cut(s)	1242, 1472
BseNI	ACTGG	3 cut(s)	124, 593, 827
BseRI	GAGGAG	1 cut(s)	393
BseXI	GCAGC	7 cut(s)	34, 40, 62, 133, 179, 1099, 1163
BsgI	GTGCAG	4 cut(s)	667, 1116, 1170, 1514
BshFI	GGCC	2 cut(s)	346, 1452
BshNI	GGYRCC	1 cut(s)	641
BsiHKAI	GWGCWC	1 cut(s)	429
BsiHKCI	CYCGRG	1 cut(s)	953
BsiSI	CCGG	3 cut(s)	690, 859, 1061
BslFI	GGGAC	3 cut(s)	201, 807, 991
BslI	CCNNNNNNNGG	2 cut(s)	43, 283
BsmAI	GTCTC	1 cut(s)	246
BsmBI	CGTCTC	1 cut(s)	246
BsmFI	GGGAC	3 cut(s)	201, 807, 991
BsnI	GGCC	2 cut(s)	346, 1452
BsoBI	CYCGRG	1 cut(s)	953
Bsp119I	TTCGAA	1 cut(s)	1419
Bsp1286I	GDGCHC	2 cut(s)	429, 1141
BspACI	CCGC	4 cut(s)	504, 636, 639, 905
BspANI	GGCC	2 cut(s)	346, 1452
BspCNI	CTCAG	2 cut(s)	1243, 1473
BspLI	GGNNCC	5 cut(s)	189, 643, 909, 1006, 1007
BspMAI	CTGCAG	1 cut(s)	52
BspOI	GCTAGC	1 cut(s)	858
BspPI	GGATC	5 cut(s)	246, 467, 902, 915, 1199
BspT104I	TTCGAA	1 cut(s)	1419
BspT107I	GGYRCC	1 cut(s)	641
BspTI	CTTAAG	1 cut(s)	511
BsrFI	RCCGGY	1 cut(s)	1060
BsrI	ACTGG	3 cut(s)	124, 593, 827
BssAI	RCCGGY	1 cut(s)	1060
BssECI	CCNNGG	2 cut(s)	360, 450
BssNI	GRCGYC	1 cut(s)	1467
BssT1I	CCWWGG	2 cut(s)	360, 450
Bst2UI	CCWGG	1 cut(s)	654
Bst4CI	ACNGT	2 cut(s)	1051, 1441
BstACI	GRCGYC	1 cut(s)	1467
BstAFI	CTTAAG	1 cut(s)	511
BstBI	TTCGAA	1 cut(s)	1419
BstC8I	GCNNGC	3 cut(s)	58, 852, 856
BstDEI	CTNAG	5 cut(s)	371, 834, 872, 1251, 1481
BstF5I	GGATG	6 cut(s)	220, 902, 1067, 1375, 1417, 1432
BstMAI	GTCTC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 143, 626, 949
BstNI	CCWGG	1 cut(s)	654
BstSCI	CCNGG	1 cut(s)	652
BstSFI	CTRYAG	2 cut(s)	48, 631
BstV1I	GCAGC	7 cut(s)	34, 40, 62, 133, 179, 1099, 1163
BstX2I	RGATCY	1 cut(s)	907
BstYI	RGATCY	1 cut(s)	907
BsuI	GTATCC	3 cut(s)	196, 442, 1382
BsuRI	GGCC	2 cut(s)	346, 1452
BtsCI	GGATG	6 cut(s)	220, 902, 1067, 1375, 1417, 1432
BtsIMutI	CAGTG	4 cut(s)	117, 586, 820, 1531
Cac8I	GCNNGC	3 cut(s)	58, 852, 856
CaiI	CAGNNNCTG	2 cut(s)	983, 1157
Cfr10I	RCCGGY	1 cut(s)	1060
Cfr13I	GGNCC	3 cut(s)	188, 345, 1005
CsiI	ACCWGGT	1 cut(s)	652
Csp6I	GTAC	2 cut(s)	642, 1225
CviAII	CATG	3 cut(s)	342, 920, 940
CviQI	GTAC	2 cut(s)	642, 1225
DdeI	CTNAG	5 cut(s)	371, 834, 872, 1251, 1481
DraIII	CACNNNGTG	1 cut(s)	395
Ecl136II	GAGCTC	1 cut(s)	427
Eco130I	CCWWGG	2 cut(s)	360, 450
Eco24I	GRGCYC	2 cut(s)	429, 1141
Eco47I	GGWCC	2 cut(s)	188, 1005
Eco53kI	GAGCTC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	953
EcoICRI	GAGCTC	1 cut(s)	427
EcoO109I	RGGNCCY	2 cut(s)	188, 1005
EcoRII	CCWGG	1 cut(s)	652
EcoT14I	CCWWGG	2 cut(s)	360, 450
EcoT38I	GRGCYC	2 cut(s)	429, 1141
ErhI	CCWWGG	2 cut(s)	360, 450
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	3 cut(s)	345, 923, 943
FalI	AAGNNNNNCTT	2 cut(s)	855, 887
FaqI	GGGAC	3 cut(s)	201, 807, 991
FatI	CATG	3 cut(s)	341, 919, 939
FauI	CCCGC	1 cut(s)	497
Fnu4HI	GCNGC	8 cut(s)	48, 51, 54, 147, 168, 637, 1113, 1152
FokI	GGATG	6 cut(s)	207, 909, 1054, 1382, 1424, 1439
FriOI	GRGCYC	2 cut(s)	429, 1141
Fsp4HI	GCNGC	8 cut(s)	48, 51, 54, 147, 168, 637, 1113, 1152
FspBI	CTAG	3 cut(s)	176, 192, 855
GluI	GCNGC	8 cut(s)	48, 51, 54, 147, 168, 637, 1113, 1152
HaeIII	GGCC	2 cut(s)	346, 1452
HapII	CCGG	3 cut(s)	690, 859, 1061
Hin1I	GRCGYC	1 cut(s)	1467
Hin1II	CATG	3 cut(s)	345, 923, 943
HincII	GTYRAC	2 cut(s)	1081, 1465
HindII	GTYRAC	2 cut(s)	1081, 1465
HinfI	GANTC	4 cut(s)	123, 320, 330, 986
HpaII	CCGG	3 cut(s)	690, 859, 1061
HphI	GGTGA	4 cut(s)	266, 466, 584, 935
Hpy166II	GTNNAC	3 cut(s)	385, 1081, 1465
Hpy188I	TCNGA	7 cut(s)	79, 160, 329, 933, 1185, 1196, 1482
Hpy188III	TCNNGA	9 cut(s)	176, 224, 562, 802, 955, 1163, 1295, 1334, 1516
Hpy8I	GTNNAC	3 cut(s)	385, 1081, 1465
HpyAV	CCTTC	6 cut(s)	155, 177, 668, 928, 1180, 1378
HpyCH4III	ACNGT	2 cut(s)	1051, 1441
HpyCH4IV	ACGT	2 cut(s)	255, 1467
HpyCH4V	TGCA	6 cut(s)	50, 650, 684, 1097, 1151, 1531
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 143, 626, 949
HpyF3I	CTNAG	5 cut(s)	371, 834, 872, 1251, 1481
HpySE526I	ACGT	2 cut(s)	255, 1467
Hsp92I	GRCGYC	1 cut(s)	1467
Hsp92II	CATG	3 cut(s)	345, 923, 943
KflI	GGGWCCC	1 cut(s)	1005
KpnI	GGTACC	1 cut(s)	645
LmnI	GCTCC	3 cut(s)	39, 164, 468
Lsp1109I	GCAGC	7 cut(s)	34, 40, 62, 133, 179, 1099, 1163
LweI	GCATC	3 cut(s)	70, 204, 1417
MabI	ACCWGGT	1 cut(s)	652
MaeI	CTAG	3 cut(s)	176, 192, 855
MaeII	ACGT	2 cut(s)	255, 1467
MaeIII	GTNAC	5 cut(s)	454, 592, 692, 814, 1433
MboII	GAAGA	2 cut(s)	316, 1497
MflI	RGATCY	1 cut(s)	907
MhlI	GDGCHC	2 cut(s)	429, 1141
MluCI	AATT	7 cut(s)	309, 336, 401, 971, 1027, 1290, 1312
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	3 cut(s)	297, 1070, 1095
MnlI	CCTC	9 cut(s)	5, 280, 371, 486, 1019, 1192, 1291, 1502, 1535
MseI	TTAA	6 cut(s)	99, 512, 624, 1026, 1365, 1377
MspA1I	CMGCKG	4 cut(s)	53, 146, 636, 850
MspCI	CTTAAG	1 cut(s)	511
MspI	CCGG	3 cut(s)	690, 859, 1061
MspR9I	CCNGG	1 cut(s)	654
MvaI	CCWGG	1 cut(s)	654
MwoI	GCNNNNNNNGC	4 cut(s)	53, 143, 626, 949
NheI	GCTAGC	1 cut(s)	854
NlaIII	CATG	3 cut(s)	345, 923, 943
NlaIV	GGNNCC	5 cut(s)	189, 643, 909, 1006, 1007
NmuCI	GTSAC	3 cut(s)	454, 592, 814
NspV	TTCGAA	1 cut(s)	1419
PfeI	GAWTC	3 cut(s)	123, 330, 986
PkrI	GCNGC	8 cut(s)	49, 52, 55, 148, 169, 638, 1114, 1153
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PpuMI	RGGWCCY	2 cut(s)	188, 1005
PshBI	ATTAAT	1 cut(s)	624
PsiI	TTATAA	1 cut(s)	282
Psp124BI	GAGCTC	1 cut(s)	429
Psp5II	RGGWCCY	2 cut(s)	188, 1005
Psp6I	CCWGG	1 cut(s)	652
PspGI	CCWGG	1 cut(s)	652
PspN4I	GGNNCC	5 cut(s)	189, 643, 909, 1006, 1007
PspPI	GGNCC	3 cut(s)	188, 345, 1005
PspPPI	RGGWCCY	2 cut(s)	188, 1005
PsrI	GAACNNNNNNTAC	2 cut(s)	491, 523
PstI	CTGCAG	1 cut(s)	52
PstNI	CAGNNNCTG	2 cut(s)	983, 1157
PsuI	RGATCY	1 cut(s)	907
PvuII	CAGCTG	3 cut(s)	53, 146, 850
RsaI	GTAC	2 cut(s)	643, 1226
RsaNI	GTAC	2 cut(s)	642, 1225
SacI	GAGCTC	1 cut(s)	429
SaqAI	TTAA	6 cut(s)	99, 512, 624, 1026, 1365, 1377
SatI	GCNGC	8 cut(s)	48, 51, 54, 147, 168, 637, 1113, 1152
Sau96I	GGNCC	3 cut(s)	188, 345, 1005
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	654
SduI	GDGCHC	2 cut(s)	429, 1141
SexAI	ACCWGGT	1 cut(s)	652
SfaNI	GCATC	3 cut(s)	70, 204, 1417
SfcI	CTRYAG	2 cut(s)	48, 631
SfuI	TTCGAA	1 cut(s)	1419
SinI	GGWCC	2 cut(s)	188, 1005
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
Sse9I	AATT	7 cut(s)	309, 336, 401, 971, 1027, 1290, 1312
SsiI	CCGC	4 cut(s)	504, 636, 639, 905
SspI	AATATT	1 cut(s)	1499
SspMI	CTAG	3 cut(s)	176, 192, 855
SstI	GAGCTC	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	652
StyI	CCWWGG	2 cut(s)	360, 450
TaaI	ACNGT	2 cut(s)	1051, 1441
TaiI	ACGT	2 cut(s)	258, 1470
TaqI	TCGA	4 cut(s)	577, 989, 1011, 1419
TasI	AATT	7 cut(s)	309, 336, 401, 971, 1027, 1290, 1312
TatI	WGTACW	1 cut(s)	1224
TauI	GCSGC	1 cut(s)	639
TfiI	GAWTC	3 cut(s)	123, 330, 986
Tru1I	TTAA	6 cut(s)	99, 512, 624, 1026, 1365, 1377
Tru9I	TTAA	6 cut(s)	99, 512, 624, 1026, 1365, 1377
TscAI	CASTG	3 cut(s)	124, 593, 827
TseFI	GTSAC	3 cut(s)	454, 592, 814
TseI	GCWGC	7 cut(s)	47, 50, 53, 146, 167, 1112, 1151
Tsp45I	GTSAC	3 cut(s)	454, 592, 814
TspDTI	ATGAA	7 cut(s)	317, 330, 614, 687, 908, 1056, 1071
TspGWI	ACGGA	2 cut(s)	55, 627
TspRI	CASTG	3 cut(s)	124, 593, 827
Vha464I	CTTAAG	1 cut(s)	511
VpaK11BI	GGWCC	2 cut(s)	188, 1005
VspI	ATTAAT	1 cut(s)	624
XapI	RAATTY	2 cut(s)	401, 971
XbaI	TCTAGA	1 cut(s)	175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	231
XspI	CTAG	3 cut(s)	176, 192, 855
ZraI	GACGTC	1 cut(s)	1468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.