Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003709

Physical Location & Seq

Genomic Coordinates Reverse (-)

67390862 .. 67401977

Gene Structure 11116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030783

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGCAGTCAATTAGGAAAAAGCAGTACTCGACCAATATGGCATTTGGATGTTCTGTGTTCTTGTCTGTGCTCCTAGCTTTAGCTGCAGCTGCCAGCGTCTCCGTTAGCACTTCCCATTTTTATTATATCCCATTTAACCGAAGCAGTTTTCCGAGTGGATTCCTTTTTGGTGCTGGTTCAGCTGCTTATCAGTCAGAAGGAGCAGCATTTCTACATGGAAGGGGACCTAGCATCTGGGATACTTTCGTTAGGAAAAATCCAGAAAAGATATCAGATCACAGCACCGGAGACGTAGCTGATGACTTTTATCACCACTATAAGGAGGATATAAAATTGATGAAGAAAATTGGGTTGGACACCTTCAGAATGTCAATTTCATGGACCAGATTACTTCCCAAGGGAAAACTTAGCGGAGGAGTGAACCCACTTGGTGTACAATTCTACAACAATCTCATCAATGAGCTCGTATCCAACGGGATCAAGCCCTTCGTGACTTTGCTCCATTATGATCCTCCCCAAGCACTTGAGGATCTGTATGGCGGGTTCTTAAGCCCTAACATAATAAAAGATTACGGAGATTATGTGGATTTCTGCTTCAAGACATTTGGTGATCGAGTGAAGCACTGGGTCACAATGAACGAACCTAACGGATTTGCTATTAGTGGCTACGACGGCGGAACCTTTGCAACAGGTCGGTGTTCTAACTATGAGGGAAATTGCACTTCCGGTAACTCTGCGACTGAACCCTACATTGTGGCACACCATTTGCTTCTTGCACATTCAGCCGCTGTCAAAATATACAAGGACAAATATCAAGCTTCCCAAAAGGGACAGATCGGGATCACAGTAGTGACTCACTGGTGGAAACCTAAGTTCCCAACACAGCTGGCAAGCCGGACGGCCACCCTTAGGTCACTTGATTTTATGTTCGGATGGTTTGCCAATCCTATAACTCATGGTGATTATCCAAAGGTCATGCGATCTTTGGTCGGGAATCGATTGCCGAAATTTACAGAAGCTGAATCGAAGCAGATAAAGACTGATTTGGATTGGCTTTTCGTTTATCCGAAGGGGATCAGAGAGGTTCTTGTGTATATAAAGGAAAAGTACAATAACCCTGACATTTACATAACTGAGAATGGATATGCGTATGGATATAATGCCTCAATGCCAATTCAAGAAGCTCGTAAGGATAATTTGAGAATAAGATACCATCACGACCATCTGTGGTATCTTTTGAAAGCTATTAAGGATGGGGTTAAAGTGAAGGGATACTATGCATGGTCATTTTTTGATGACTTCGAATGGGATGCCGGTTACACAGTTGGGTTTGGCCTAACATTAGTTGATTTCAAGGATAATCTGAGAAGATACCTCAAATATTCTGCCTATTGGTTCAAGATGTTCCTCCTGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

473

Amino Acids

53.87

Weight (kDa)

9.06

Isoelectric Point (pI)

25.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	48 - 352	3.7e-98	Glycosyl hydrolase family 1
Glyco_hydro_1	PF00232	346 - 468	5.1e-34	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44480 AT2G44480 AT2G44480 AT2G44480 AT2G44480
fragaria_vesca	FvH4_7g00214 FvH4_7g00214 FvH4_7g00214 FvH4_7g00214 FvH4_7g00250 FvH4_7g00270
malus_domestica	MD07G1003400.v1.1
prunus_persica	Prupe.2G005100_v2.0.a1
pyrus_communis	pycom07g00340
rosa_chinensis	RchiOBHm_Chr1g0313661 RchiOBHm_Chr1g0313711 RchiOBHm_Chr1g0313741
rosa_laevigata	RLG00000030780 RLG00000030783 RLG00000030785
rosa_multiflora	Rmu_sc0009740.1_g000006 Rmu_ssc0000027.1_g000024
rosa_roxburghii	Rroxscaffold_4G00332110 Rroxscaffold_4G00332130
rosa_rugosa	RorugPtG0005800 RorugPtG0005900.1 RorugPtG0006000.1
rosa_samantha	Rh1AG005800 Rh1CG008900 Rh1CG009000 Rh1DG004000 Rh1DG004200
rosa_wichuraiana	Rw1G000340 Rw1G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	411, 540, 675, 786
AclWI	GGATC	5 cut(s)	485, 503, 537, 848, 1082
AcoI	YGGCCR	1 cut(s)	900
AcsI	RAATTY	1 cut(s)	1007
AcuI	CTGAAG	1 cut(s)	346
AdeI	CACNNNGTG	1 cut(s)	431
AfaI	GTAC	3 cut(s)	26, 435, 1109
AfiI	CCNNNNNNNGG	2 cut(s)	319, 909
AflII	CTTAAG	1 cut(s)	547
AgsI	TTSAA	5 cut(s)	598, 1178, 1240, 1354, 1399
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AleI	CACNNNNGTG	1 cut(s)	848
Alw21I	GWGCWC	2 cut(s)	72, 465
Alw26I	GTCTC	2 cut(s)	103, 282
AlwI	GGATC	5 cut(s)	485, 503, 537, 848, 1082
AlwNI	CAGNNNCTG	2 cut(s)	788, 1019
AoxI	GGCC	2 cut(s)	900, 1333
ApeKI	GCWGC	5 cut(s)	83, 86, 89, 182, 203
ApoI	RAATTY	1 cut(s)	1007
AspS9I	GGNCC	2 cut(s)	224, 381
AsuHPI	GGTGA	3 cut(s)	302, 620, 971
AsuII	TTCGAA	1 cut(s)	1302
AvaII	GGWCC	2 cut(s)	224, 381
AxyI	CCTNAGG	1 cut(s)	908
BaeI	ACNNNNGTAYC	2 cut(s)	231, 264
BanII	GRGCYC	1 cut(s)	465
Bbv12I	GWGCWC	2 cut(s)	72, 465
BbvI	GCAGC	5 cut(s)	70, 76, 98, 169, 215
BccI	CCATC	4 cut(s)	927, 1221, 1230, 1247
BceAI	ACGGC	2 cut(s)	688, 915
BcgI	CGANNNNNNTGC	2 cut(s)	1292, 1326
BciVI	GTATCC	3 cut(s)	232, 478, 1265
BcoDI	GTCTC	2 cut(s)	103, 282
BfaI	CTAG	2 cut(s)	74, 228
BfmI	CTRYAG	1 cut(s)	84
BfrI	CTTAAG	1 cut(s)	547
BfuI	GTATCC	3 cut(s)	232, 478, 1265
BisI	GCNGC	6 cut(s)	84, 87, 90, 183, 204, 786
BlsI	GCNGC	6 cut(s)	85, 88, 91, 184, 205, 787
BmcAI	AGTACT	1 cut(s)	26
Bme18I	GGWCC	2 cut(s)	224, 381
BmgT120I	GGNCC	2 cut(s)	224, 381
BmiI	GGNNCC	2 cut(s)	225, 679
BmrI	ACTGGG	1 cut(s)	634
BmsI	GCATC	2 cut(s)	240, 1300
BmuI	ACTGGG	1 cut(s)	634
Bpu14I	TTCGAA	1 cut(s)	1302
BpuEI	CTTGAG	1 cut(s)	545
Bsa29I	ATCGAT	1 cut(s)	997
BsaBI	GATNNNNATC	1 cut(s)	839
BsaJI	CCNNGG	1 cut(s)	396
BsaWI	WCCGGW	2 cut(s)	284, 725
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 909
Bse118I	RCCGGY	1 cut(s)	1313
Bse1I	ACTGG	2 cut(s)	629, 863
Bse21I	CCTNAGG	1 cut(s)	908
Bse8I	GATNNNNATC	1 cut(s)	839
BseCI	ATCGAT	1 cut(s)	997
BseDI	CCNNGG	1 cut(s)	396
BseGI	GGATG	4 cut(s)	53, 938, 1258, 1315
BseJI	GATNNNNATC	1 cut(s)	839
BseLI	CCNNNNNNNGG	2 cut(s)	319, 909
BseMII	CTCAG	2 cut(s)	1125, 1355
BseNI	ACTGG	2 cut(s)	629, 863
BseRI	GAGGAG	1 cut(s)	429
BseXI	GCAGC	5 cut(s)	70, 76, 98, 169, 215
BsgI	GTGCAG	1 cut(s)	1397
BshFI	GGCC	2 cut(s)	902, 1335
BshVI	ATCGAT	1 cut(s)	997
BsiHKAI	GWGCWC	2 cut(s)	72, 465
BsiSI	CCGG	4 cut(s)	285, 726, 895, 1314
BslFI	GGGAC	2 cut(s)	237, 843
BslI	CCNNNNNNNGG	2 cut(s)	319, 909
BsmAI	GTCTC	2 cut(s)	103, 282
BsmBI	CGTCTC	2 cut(s)	103, 282
BsmFI	GGGAC	2 cut(s)	237, 843
BsnI	GGCC	2 cut(s)	902, 1335
Bsp119I	TTCGAA	1 cut(s)	1302
Bsp1286I	GDGCHC	2 cut(s)	72, 465
Bsp1407I	TGTACA	1 cut(s)	433
Bsp143I	GATC	9 cut(s)	274, 477, 508, 529, 610, 834, 840, 980, 1074
BspACI	CCGC	4 cut(s)	411, 540, 675, 786
BspANI	GGCC	2 cut(s)	902, 1335
BspCNI	CTCAG	2 cut(s)	1126, 1356
BspDI	ATCGAT	1 cut(s)	997
BspLI	GGNNCC	2 cut(s)	225, 679
BspMAI	CTGCAG	1 cut(s)	88
BspPI	GGATC	5 cut(s)	485, 503, 537, 848, 1082
BspT104I	TTCGAA	1 cut(s)	1302
BspTI	CTTAAG	1 cut(s)	547
BsrFI	RCCGGY	1 cut(s)	1313
BsrGI	TGTACA	1 cut(s)	433
BsrI	ACTGG	2 cut(s)	629, 863
BssAI	RCCGGY	1 cut(s)	1313
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	9 cut(s)	274, 477, 508, 529, 610, 834, 840, 980, 1074
BssT1I	CCWWGG	1 cut(s)	396
Bst4CI	ACNGT	2 cut(s)	847, 1324
BstAFI	CTTAAG	1 cut(s)	547
BstAUI	TGTACA	1 cut(s)	433
BstBI	TTCGAA	1 cut(s)	1302
BstC8I	GCNNGC	3 cut(s)	94, 888, 892
BstDEI	CTNAG	5 cut(s)	407, 870, 908, 1134, 1364
BstF5I	GGATG	4 cut(s)	53, 938, 1258, 1315
BstKTI	GATC	9 cut(s)	277, 480, 511, 532, 613, 837, 843, 983, 1077
BstMAI	GTCTC	2 cut(s)	103, 282
BstMBI	GATC	9 cut(s)	274, 477, 508, 529, 610, 834, 840, 980, 1074
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 89, 179, 672, 782
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	5 cut(s)	70, 76, 98, 169, 215
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
Bsu15I	ATCGAT	1 cut(s)	997
Bsu36I	CCTNAGG	1 cut(s)	908
BsuI	GTATCC	3 cut(s)	232, 478, 1265
BsuRI	GGCC	2 cut(s)	902, 1335
BsuTUI	ATCGAT	1 cut(s)	997
BtsCI	GGATG	4 cut(s)	53, 938, 1258, 1315
BtsIMutI	CAGTG	3 cut(s)	622, 856, 1414
Cac8I	GCNNGC	3 cut(s)	94, 888, 892
CaiI	CAGNNNCTG	2 cut(s)	788, 1019
Cfr10I	RCCGGY	1 cut(s)	1313
Cfr13I	GGNCC	2 cut(s)	224, 381
ClaI	ATCGAT	1 cut(s)	997
CseI	GACGC	1 cut(s)	85
Csp6I	GTAC	3 cut(s)	25, 434, 1108
CviAII	CATG	5 cut(s)	215, 378, 956, 976, 1281
CviQI	GTAC	3 cut(s)	25, 434, 1108
DdeI	CTNAG	5 cut(s)	407, 870, 908, 1134, 1364
DpnI	GATC	9 cut(s)	276, 479, 510, 531, 612, 836, 842, 982, 1076
DpnII	GATC	9 cut(s)	274, 477, 508, 529, 610, 834, 840, 980, 1074
DraIII	CACNNNGTG	1 cut(s)	431
EaeI	YGGCCR	1 cut(s)	900
EciI	GGCGGA	1 cut(s)	690
Ecl136II	GAGCTC	1 cut(s)	463
Eco130I	CCWWGG	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	465
Eco32I	GATATC	1 cut(s)	270
Eco47I	GGWCC	2 cut(s)	224, 381
Eco53kI	GAGCTC	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	346
Eco81I	CCTNAGG	1 cut(s)	908
EcoICRI	GAGCTC	1 cut(s)	463
EcoO109I	RGGNCCY	1 cut(s)	224
EcoRV	GATATC	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	396
EcoT22I	ATGCAT	1 cut(s)	1282
EcoT38I	GRGCYC	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	396
Esp3I	CGTCTC	2 cut(s)	103, 282
FaeI	CATG	5 cut(s)	218, 381, 959, 979, 1284
FaqI	GGGAC	2 cut(s)	237, 843
FatI	CATG	5 cut(s)	214, 377, 955, 975, 1280
FauI	CCCGC	1 cut(s)	533
Fnu4HI	GCNGC	6 cut(s)	84, 87, 90, 183, 204, 786
FokI	GGATG	4 cut(s)	60, 945, 1265, 1322
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	6 cut(s)	84, 87, 90, 183, 204, 786
FspBI	CTAG	2 cut(s)	74, 228
GluI	GCNGC	6 cut(s)	84, 87, 90, 183, 204, 786
HaeIII	GGCC	2 cut(s)	902, 1335
HapII	CCGG	4 cut(s)	285, 726, 895, 1314
HgaI	GACGC	1 cut(s)	85
Hin1II	CATG	5 cut(s)	218, 381, 959, 979, 1284
HindIII	AAGCTT	1 cut(s)	816
HinfI	GANTC	4 cut(s)	159, 853, 994, 1022
HpaII	CCGG	4 cut(s)	285, 726, 895, 1314
HphI	GGTGA	3 cut(s)	302, 620, 971
Hpy166II	GTNNAC	2 cut(s)	421, 434
Hpy188I	TCNGA	8 cut(s)	153, 196, 274, 365, 932, 1068, 1079, 1365
Hpy188III	TCNNGA	8 cut(s)	260, 490, 598, 838, 991, 1178, 1217, 1399
Hpy8I	GTNNAC	2 cut(s)	421, 434
Hpy99I	CGWCG	1 cut(s)	674
HpyAV	CCTTC	6 cut(s)	191, 213, 370, 496, 1063, 1261
HpyCH4III	ACNGT	2 cut(s)	847, 1324
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	7 cut(s)	4, 86, 686, 720, 776, 1280, 1414
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 89, 179, 672, 782
HpyF3I	CTNAG	5 cut(s)	407, 870, 908, 1134, 1364
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	5 cut(s)	218, 381, 959, 979, 1284
Kzo9I	GATC	9 cut(s)	274, 477, 508, 529, 610, 834, 840, 980, 1074
LmnI	GCTCC	3 cut(s)	75, 200, 504
Lsp1109I	GCAGC	5 cut(s)	70, 76, 98, 169, 215
LweI	GCATC	2 cut(s)	240, 1300
MaeI	CTAG	2 cut(s)	74, 228
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	6 cut(s)	490, 628, 728, 850, 912, 1316
MalI	GATC	9 cut(s)	276, 479, 510, 531, 612, 836, 842, 982, 1076
MboI	GATC	9 cut(s)	274, 477, 508, 529, 610, 834, 840, 980, 1074
MboII	GAAGA	2 cut(s)	352, 1380
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	2 cut(s)	72, 465
MluCI	AATT	9 cut(s)	9, 332, 345, 372, 437, 715, 1007, 1173, 1195
MlyI	GAGTC	1 cut(s)	847
MmeI	TCCRAC	2 cut(s)	333, 495
MnlI	CCTC	9 cut(s)	316, 407, 520, 522, 703, 1075, 1174, 1385, 1418
Mph1103I	ATGCAT	1 cut(s)	1282
MseI	TTAA	4 cut(s)	135, 548, 1248, 1260
MslI	CAYNNNNRTG	2 cut(s)	46, 848
MspA1I	CMGCKG	4 cut(s)	89, 182, 788, 886
MspCI	CTTAAG	1 cut(s)	547
MspI	CCGG	4 cut(s)	285, 726, 895, 1314
MwoI	GCNNNNNNNGC	5 cut(s)	83, 89, 179, 672, 782
NdeII	GATC	9 cut(s)	274, 477, 508, 529, 610, 834, 840, 980, 1074
NlaIII	CATG	5 cut(s)	218, 381, 959, 979, 1284
NlaIV	GGNNCC	2 cut(s)	225, 679
NmuCI	GTSAC	4 cut(s)	490, 628, 850, 912
NsiI	ATGCAT	1 cut(s)	1282
NspV	TTCGAA	1 cut(s)	1302
OliI	CACNNNNGTG	1 cut(s)	848
PfeI	GAWTC	3 cut(s)	159, 994, 1022
PkrI	GCNGC	6 cut(s)	85, 88, 91, 184, 205, 787
PleI	GAGTC	1 cut(s)	847
PpsI	GAGTC	1 cut(s)	847
PpuMI	RGGWCCY	1 cut(s)	224
Psp124BI	GAGCTC	1 cut(s)	465
Psp5II	RGGWCCY	1 cut(s)	224
PspN4I	GGNNCC	2 cut(s)	225, 679
PspPI	GGNCC	2 cut(s)	224, 381
PspPPI	RGGWCCY	1 cut(s)	224
PsrI	GAACNNNNNNTAC	2 cut(s)	527, 559
PstI	CTGCAG	1 cut(s)	88
PstNI	CAGNNNCTG	2 cut(s)	788, 1019
PsuI	RGATCY	1 cut(s)	529
PvuII	CAGCTG	3 cut(s)	89, 182, 886
RsaI	GTAC	3 cut(s)	26, 435, 1109
RsaNI	GTAC	3 cut(s)	25, 434, 1108
RseI	CAYNNNNRTG	2 cut(s)	46, 848
SacI	GAGCTC	1 cut(s)	465
SaqAI	TTAA	4 cut(s)	135, 548, 1248, 1260
SatI	GCNGC	6 cut(s)	84, 87, 90, 183, 204, 786
Sau3AI	GATC	9 cut(s)	274, 477, 508, 529, 610, 834, 840, 980, 1074
Sau96I	GGNCC	2 cut(s)	224, 381
ScaI	AGTACT	1 cut(s)	26
SchI	GAGTC	1 cut(s)	847
SduI	GDGCHC	2 cut(s)	72, 465
SfaNI	GCATC	2 cut(s)	240, 1300
SfcI	CTRYAG	1 cut(s)	84
SfuI	TTCGAA	1 cut(s)	1302
SinI	GGWCC	2 cut(s)	224, 381
SmiMI	CAYNNNNRTG	2 cut(s)	46, 848
SmlI	CTYRAG	2 cut(s)	524, 547
SmoI	CTYRAG	2 cut(s)	524, 547
Sse9I	AATT	9 cut(s)	9, 332, 345, 372, 437, 715, 1007, 1173, 1195
SsiI	CCGC	4 cut(s)	411, 540, 675, 786
SspI	AATATT	1 cut(s)	1382
SspMI	CTAG	2 cut(s)	74, 228
SstI	GAGCTC	1 cut(s)	465
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	2 cut(s)	847, 1324
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	5 cut(s)	29, 613, 997, 1025, 1302
TasI	AATT	9 cut(s)	9, 332, 345, 372, 437, 715, 1007, 1173, 1195
TatI	WGTACW	3 cut(s)	24, 433, 1107
TauI	GCSGC	1 cut(s)	788
TfiI	GAWTC	3 cut(s)	159, 994, 1022
Tru1I	TTAA	4 cut(s)	135, 548, 1248, 1260
Tru9I	TTAA	4 cut(s)	135, 548, 1248, 1260
TscAI	CASTG	2 cut(s)	629, 863
TseFI	GTSAC	4 cut(s)	490, 628, 850, 912
TseI	GCWGC	5 cut(s)	83, 86, 89, 182, 203
Tsp45I	GTSAC	4 cut(s)	490, 628, 850, 912
TspDTI	ATGAA	3 cut(s)	353, 366, 650
TspGWI	ACGGA	3 cut(s)	91, 588, 663
TspRI	CASTG	2 cut(s)	629, 863
Vha464I	CTTAAG	1 cut(s)	547
VpaK11BI	GGWCC	2 cut(s)	224, 381
XapI	RAATTY	1 cut(s)	1007
XspI	CTAG	2 cut(s)	74, 228
ZrmI	AGTACT	1 cut(s)	26
Zsp2I	ATGCAT	1 cut(s)	1282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.