Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009740.1

Orthogroup ID

OG0003709

Physical Location & Seq

Genomic Coordinates Forward (+)

18263 .. 22007

Gene Structure 3745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009740.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1563 bp

atgggtggtcgtcctctgctcttcttcatcttgatctttatctgcctcatactcactgctcttgttggctcatcagcaagcaatgaggcggctgctgctgctgctgctcctcgtcattattctattccattcaatagaagtagcttcccagctagtttcatcttcggagctggttctgctgcttatcagactgaaggagcagcacatatccatggaaagggaccaagcatatgggacactttcactacaaaacatcaagaaaaaataactgatggtagcaacggggatgtagcagatgacttttaccatcgttatgaggaagatgtgaaattgatgaaaaaagtcggtttagactccttcagattttcaatctcatggtcaagattactacctaagggaaaagtcaaaggtggagtgaaccaagaaggcgtaaaattctacaacaatcttataaatgagctcttgtcgaatggaataataccttttgtgacgcttttccactgggatctaccacaggctcttgaagatgagtatggtggatttttaaatcataagatcgttggtgattttcaagattatgccgatttttgtttcaaaacatttggtgaccgagttaagcattggatcactctgaacgagccagttacatactgtgtcaacgggtacaatggtggaaccaatgcacctggtcgatgctctaactatgtcggaaattgcaccgccggtaactctgccacagagccttacattgtaggccatcatctgctgcttgctcacgcgcactctgcaaatttatacaagaagaagtatcaggcttctcaaaaagggcaaatcgggatttcggttgtgacatactggtatttagcaaaatcggaaactgctgcaagcaagagggcagcttctaggtctcttgattttgtttttggatggtttgctcatcccgttacattcggtgactatcctcaaaccatgagagcttctgtgggtgatcggttgcctaaattcagtaaagaagaaactaagctcctaaaaggatctctagatttccttggtgtcaattactacacaagtagttatgcagatgtttcctcactctccactagtaatgtcaaccaaagtttcttcggagatatgcatacttctctctctactgagaaaaatggggttcctttgggttcagcgactgctttgagctggctttacatctatccaaagggaattcgagagcttatgctatacataaaagaaaagtacaatgatcccgagatttacattactgaaaatggtgttggtgaggcaaataatagctcccagcccctcaacgatgccctcaaggatagtacaaggataagataccattctctccatctttcatatcttttgaagtccatcaaggagggggtgaaggtgaggggatacttcgcatggtcatttcttgatgtttatgaatgggatgcaggctacacagttcgatttggactcacctacgtcgattacaagaataacttgaagagatatctcaagtactctgcatactggttcaagatgttcctcctcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

520

Amino Acids

58.35

Weight (kDa)

8.79

Isoelectric Point (pI)

25.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44480 AT2G44480 AT2G44480 AT2G44480 AT2G44480
fragaria_vesca	FvH4_7g00214 FvH4_7g00214 FvH4_7g00214 FvH4_7g00214 FvH4_7g00250 FvH4_7g00270
malus_domestica	MD07G1003400.v1.1
prunus_persica	Prupe.2G005100_v2.0.a1
pyrus_communis	pycom07g00340
rosa_chinensis	RchiOBHm_Chr1g0313661 RchiOBHm_Chr1g0313711 RchiOBHm_Chr1g0313741
rosa_laevigata	RLG00000030780 RLG00000030783 RLG00000030785
rosa_multiflora	Rmu_sc0009740.1_g000006 Rmu_ssc0000027.1_g000024
rosa_roxburghii	Rroxscaffold_4G00332110 Rroxscaffold_4G00332130
rosa_rugosa	RorugPtG0005800 RorugPtG0005900.1 RorugPtG0006000.1
rosa_samantha	Rh1AG005800 Rh1CG008900 Rh1CG009000 Rh1DG004000 Rh1DG004200
rosa_wichuraiana	Rw1G000340 Rw1G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	452
AccII	CGCG	1 cut(s)	779
AciI	CCGC	2 cut(s)	89, 720
AclWI	GGATC	4 cut(s)	513, 632, 1042, 1253
AcsI	RAATTY	4 cut(s)	434, 790, 1001, 1218
AcuI	CTGAAG	2 cut(s)	213, 343
AfaI	GTAC	4 cut(s)	665, 1253, 1342, 1526
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	8 cut(s)	133, 369, 524, 572, 595, 1384, 1510, 1543
AhlI	ACTAGT	1 cut(s)	1100
AjnI	CCWGG	1 cut(s)	685
AjuI	GAANNNNNNNTTGG	2 cut(s)	1272, 1304
Alw21I	GWGCWC	1 cut(s)	462
Alw26I	GTCTC	1 cut(s)	912
AlwI	GGATC	4 cut(s)	513, 632, 1042, 1253
AlwNI	CAGNNNCTG	1 cut(s)	1184
Ama87I	CYCGRG	1 cut(s)	1262
AoxI	GGCC	1 cut(s)	754
ApoI	RAATTY	4 cut(s)	434, 790, 1001, 1218
AspLEI	GCGC	1 cut(s)	781
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	8 cut(s)	575, 617, 965, 998, 1304, 1414, 1420, 1474
AvaI	CYCGRG	1 cut(s)	1262
AvaII	GGWCC	1 cut(s)	221
AxyI	CCTNAGG	1 cut(s)	393
BaeI	ACNNNNGTAYC	2 cut(s)	655, 688
BanII	GRGCYC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	462
BccI	CCATC	6 cut(s)	266, 315, 765, 921, 1374, 1397
BciT130I	CCWGG	1 cut(s)	687
BciVI	GTATCC	1 cut(s)	1409
BcoDI	GTCTC	1 cut(s)	912
BcuI	ACTAGT	1 cut(s)	1100
BfaI	CTAG	4 cut(s)	153, 903, 1040, 1101
BfuI	GTATCC	1 cut(s)	1409
BmcAI	AGTACT	1 cut(s)	1526
Bme1390I	CCNGG	1 cut(s)	687
Bme18I	GGWCC	1 cut(s)	221
BmeT110I	CYCGRG	1 cut(s)	1262
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	3 cut(s)	222, 676, 1167
BmrFI	CCNGG	1 cut(s)	687
BmrI	ACTGGG	1 cut(s)	511
BmsI	GCATC	3 cut(s)	683, 1315, 1444
BmuI	ACTGGG	1 cut(s)	511
BpuEI	CTTGAG	2 cut(s)	1316, 1505
BsaBI	GATNNNNATC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	912
BsaJI	CCNNGG	2 cut(s)	211, 1048
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse118I	RCCGGY	1 cut(s)	722
Bse1I	ACTGG	4 cut(s)	506, 641, 860, 1541
Bse21I	CCTNAGG	1 cut(s)	393
Bse3DI	GCAATG	1 cut(s)	88
Bse8I	GATNNNNATC	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	687
BseDI	CCNNGG	2 cut(s)	211, 1048
BseGI	GGATG	4 cut(s)	292, 932, 937, 1459
BseJI	GATNNNNATC	1 cut(s)	38
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMI	GCAATG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	1143
BseNI	ACTGG	4 cut(s)	506, 641, 860, 1541
BseRI	GAGGAG	2 cut(s)	99, 1544
BseYI	CCCAGC	2 cut(s)	148, 1311
Bsh1236I	CGCG	1 cut(s)	779
BshFI	GGCC	1 cut(s)	756
BsiHKAI	GWGCWC	1 cut(s)	462
BsiHKCI	CYCGRG	1 cut(s)	1262
BsiSI	CCGG	1 cut(s)	723
BslFI	GGGAC	2 cut(s)	234, 248
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	912
BsmFI	GGGAC	2 cut(s)	234, 248
BsnI	GGCC	1 cut(s)	756
Bso31I	GGTCTC	1 cut(s)	912
BsoBI	CYCGRG	1 cut(s)	1262
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	7 cut(s)	33, 505, 555, 624, 988, 1034, 1258
Bsp19I	CCATGG	1 cut(s)	211
BspACI	CCGC	2 cut(s)	89, 720
BspANI	GGCC	1 cut(s)	756
BspCNI	CTCAG	1 cut(s)	1144
BspFNI	CGCG	1 cut(s)	779
BspLI	GGNNCC	3 cut(s)	222, 676, 1167
BspPI	GGATC	4 cut(s)	513, 632, 1042, 1253
BspQI	GCTCTTC	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	912
BsrDI	GCAATG	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	722
BsrI	ACTGG	4 cut(s)	506, 641, 860, 1541
BssAI	RCCGGY	1 cut(s)	722
BssECI	CCNNGG	2 cut(s)	211, 1048
BssMI	GATC	7 cut(s)	33, 505, 555, 624, 988, 1034, 1258
BssT1I	CCWWGG	2 cut(s)	211, 1048
Bst2UI	CCWGG	1 cut(s)	687
Bst4CI	ACNGT	2 cut(s)	653, 1468
Bst6I	CTCTTC	2 cut(s)	26, 1505
BstC8I	GCNNGC	5 cut(s)	79, 771, 886, 1196, 1459
BstDEI	CTNAG	3 cut(s)	393, 1020, 1152
BstDSI	CCRYGG	1 cut(s)	211
BstEII	GGTNACC	1 cut(s)	605
BstF5I	GGATG	4 cut(s)	292, 932, 937, 1459
BstFNI	CGCG	1 cut(s)	779
BstHHI	GCGC	1 cut(s)	781
BstKTI	GATC	7 cut(s)	36, 508, 558, 627, 991, 1037, 1261
BstMAI	GTCTC	1 cut(s)	912
BstMBI	GATC	7 cut(s)	33, 505, 555, 624, 988, 1034, 1258
BstMWI	GCNNNNNNNGC	6 cut(s)	95, 98, 101, 104, 176, 785
BstNI	CCWGG	1 cut(s)	687
BstPI	GGTNACC	1 cut(s)	605
BstSCI	CCNGG	1 cut(s)	685
BstUI	CGCG	1 cut(s)	779
BstX2I	RGATCY	2 cut(s)	505, 1034
BstXI	CCANNNNNNTGG	1 cut(s)	231
BstYI	RGATCY	2 cut(s)	505, 1034
Bsu36I	CCTNAGG	1 cut(s)	393
BsuI	GTATCC	1 cut(s)	1409
BsuRI	GGCC	1 cut(s)	756
BtgI	CCRYGG	1 cut(s)	211
BtsCI	GGATG	4 cut(s)	292, 932, 937, 1459
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	2 cut(s)	54, 499
Cac8I	GCNNGC	5 cut(s)	79, 771, 886, 1196, 1459
CaiI	CAGNNNCTG	1 cut(s)	1184
CfoI	GCGC	1 cut(s)	781
Cfr10I	RCCGGY	1 cut(s)	722
Cfr13I	GGNCC	1 cut(s)	221
CseI	GACGC	1 cut(s)	499
CsiI	ACCWGGT	1 cut(s)	685
Csp6I	GTAC	4 cut(s)	664, 1252, 1341, 1525
CviAII	CATG	4 cut(s)	212, 375, 970, 1425
CviQI	GTAC	4 cut(s)	664, 1252, 1341, 1525
DdeI	CTNAG	3 cut(s)	393, 1020, 1152
DpnI	GATC	7 cut(s)	35, 507, 557, 626, 990, 1036, 1260
DpnII	GATC	7 cut(s)	33, 505, 555, 624, 988, 1034, 1258
DraI	TTTAAA	1 cut(s)	546
Eam1104I	CTCTTC	2 cut(s)	26, 1505
EarI	CTCTTC	2 cut(s)	26, 1505
Ecl136II	GAGCTC	1 cut(s)	460
Eco130I	CCWWGG	2 cut(s)	211, 1048
Eco24I	GRGCYC	1 cut(s)	462
Eco31I	GGTCTC	1 cut(s)	912
Eco32I	GATATC	1 cut(s)	1517
Eco47I	GGWCC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	460
Eco57I	CTGAAG	2 cut(s)	213, 343
Eco81I	CCTNAGG	1 cut(s)	393
Eco88I	CYCGRG	1 cut(s)	1262
Eco91I	GGTNACC	1 cut(s)	605
EcoICRI	GAGCTC	1 cut(s)	460
EcoO65I	GGTNACC	1 cut(s)	605
EcoRI	GAATTC	1 cut(s)	1218
EcoRII	CCWGG	1 cut(s)	685
EcoRV	GATATC	1 cut(s)	1517
EcoT14I	CCWWGG	2 cut(s)	211, 1048
EcoT22I	ATGCAT	1 cut(s)	1137
EcoT38I	GRGCYC	1 cut(s)	462
ErhI	CCWWGG	2 cut(s)	211, 1048
FaeI	CATG	4 cut(s)	215, 378, 973, 1428
FalI	AAGNNNNNCTT	2 cut(s)	1490, 1522
FaqI	GGGAC	2 cut(s)	234, 248
FatI	CATG	4 cut(s)	211, 374, 969, 1424
FauNDI	CATATG	1 cut(s)	230
FokI	GGATG	4 cut(s)	299, 924, 939, 1466
FriOI	GRGCYC	1 cut(s)	462
FspBI	CTAG	4 cut(s)	153, 903, 1040, 1101
GlaI	GCGC	1 cut(s)	780
GsaI	CCCAGC	2 cut(s)	152, 1315
HaeIII	GGCC	1 cut(s)	756
HapII	CCGG	1 cut(s)	723
HgaI	GACGC	1 cut(s)	499
HhaI	GCGC	1 cut(s)	781
Hin1II	CATG	4 cut(s)	215, 378, 973, 1428
Hin6I	GCGC	1 cut(s)	779
HinP1I	GCGC	1 cut(s)	779
HincII	GTYRAC	2 cut(s)	658, 1111
HindII	GTYRAC	2 cut(s)	658, 1111
HinfI	GANTC	2 cut(s)	353, 1479
HpaII	CCGG	1 cut(s)	723
HphI	GGTGA	8 cut(s)	575, 617, 965, 998, 1304, 1414, 1420, 1474
Hpy166II	GTNNAC	3 cut(s)	418, 658, 1111
Hpy188I	TCNGA	7 cut(s)	167, 189, 362, 633, 710, 874, 1127
Hpy8I	GTNNAC	3 cut(s)	418, 658, 1111
Hpy99I	CGWCG	1 cut(s)	1493
HpyAV	CCTTC	4 cut(s)	188, 367, 419, 1399
HpyCH4III	ACNGT	2 cut(s)	653, 1468
HpyCH4IV	ACGT	1 cut(s)	1488
HpyCH4V	TGCA	8 cut(s)	683, 717, 788, 884, 1079, 1135, 1457, 1532
HpyF10VI	GCNNNNNNNGC	6 cut(s)	95, 98, 101, 104, 176, 785
HpyF3I	CTNAG	3 cut(s)	393, 1020, 1152
HpySE526I	ACGT	1 cut(s)	1488
Hsp92II	CATG	4 cut(s)	215, 378, 973, 1428
HspAI	GCGC	1 cut(s)	779
Kzo9I	GATC	7 cut(s)	33, 505, 555, 624, 988, 1034, 1258
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	5 cut(s)	112, 167, 197, 1029, 1313
LweI	GCATC	3 cut(s)	683, 1315, 1444
MabI	ACCWGGT	1 cut(s)	685
MaeI	CTAG	4 cut(s)	153, 903, 1040, 1101
MaeII	ACGT	1 cut(s)	1488
MaeIII	GTNAC	7 cut(s)	487, 605, 643, 725, 847, 943, 953
MalI	GATC	7 cut(s)	35, 507, 557, 626, 990, 1036, 1260
MboI	GATC	7 cut(s)	33, 505, 555, 624, 988, 1034, 1258
MboII	GAAGA	9 cut(s)	13, 16, 154, 332, 536, 814, 1025, 1114, 1522
MflI	RGATCY	2 cut(s)	505, 1034
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	7 cut(s)	329, 434, 712, 790, 1001, 1057, 1218
MlyI	GAGTC	2 cut(s)	347, 1473
MmeI	TCCRAC	1 cut(s)	688
Mph1103I	ATGCAT	1 cut(s)	1137
MseI	TTAA	2 cut(s)	545, 615
MslI	CAYNNNNRTG	2 cut(s)	210, 312
MspI	CCGG	1 cut(s)	723
MspR9I	CCNGG	1 cut(s)	687
MvaI	CCWGG	1 cut(s)	687
MvnI	CGCG	1 cut(s)	779
MwoI	GCNNNNNNNGC	6 cut(s)	95, 98, 101, 104, 176, 785
NcoI	CCATGG	1 cut(s)	211
NdeI	CATATG	1 cut(s)	230
NdeII	GATC	7 cut(s)	33, 505, 555, 624, 988, 1034, 1258
NlaIII	CATG	4 cut(s)	215, 378, 973, 1428
NlaIV	GGNNCC	3 cut(s)	222, 676, 1167
NmuCI	GTSAC	4 cut(s)	487, 605, 847, 953
NsiI	ATGCAT	1 cut(s)	1137
PciSI	GCTCTTC	1 cut(s)	26
PleI	GAGTC	2 cut(s)	347, 1473
PpsI	GAGTC	2 cut(s)	347, 1473
PsiI	TTATAA	1 cut(s)	452
Psp124BI	GAGCTC	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	685
PspEI	GGTNACC	1 cut(s)	605
PspFI	CCCAGC	2 cut(s)	148, 1311
PspGI	CCWGG	1 cut(s)	685
PspN4I	GGNNCC	3 cut(s)	222, 676, 1167
PspPI	GGNCC	1 cut(s)	221
PstNI	CAGNNNCTG	1 cut(s)	1184
PsuI	RGATCY	2 cut(s)	505, 1034
RsaI	GTAC	4 cut(s)	665, 1253, 1342, 1526
RsaNI	GTAC	4 cut(s)	664, 1252, 1341, 1525
RseI	CAYNNNNRTG	2 cut(s)	210, 312
SacI	GAGCTC	1 cut(s)	462
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	545, 615
Sau3AI	GATC	7 cut(s)	33, 505, 555, 624, 988, 1034, 1258
Sau96I	GGNCC	1 cut(s)	221
ScaI	AGTACT	1 cut(s)	1526
SchI	GAGTC	2 cut(s)	347, 1473
ScrFI	CCNGG	1 cut(s)	687
SduI	GDGCHC	1 cut(s)	462
SexAI	ACCWGGT	1 cut(s)	685
SfaNI	GCATC	3 cut(s)	683, 1315, 1444
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	2 cut(s)	210, 312
SmlI	CTYRAG	2 cut(s)	1331, 1520
SmoI	CTYRAG	2 cut(s)	1331, 1520
SpeI	ACTAGT	1 cut(s)	1100
Sse9I	AATT	7 cut(s)	329, 434, 712, 790, 1001, 1057, 1218
SsiI	CCGC	2 cut(s)	89, 720
SspMI	CTAG	4 cut(s)	153, 903, 1040, 1101
SstI	GAGCTC	1 cut(s)	462
StyD4I	CCNGG	1 cut(s)	685
StyI	CCWWGG	2 cut(s)	211, 1048
TaaI	ACNGT	2 cut(s)	653, 1468
TaiI	ACGT	1 cut(s)	1491
TaqI	TCGA	5 cut(s)	467, 691, 1222, 1471, 1491
TaqII	GACCGA	1 cut(s)	624
TasI	AATT	7 cut(s)	329, 434, 712, 790, 1001, 1057, 1218
TatI	WGTACW	3 cut(s)	1251, 1340, 1524
TauI	GCSGC	1 cut(s)	92
Tru1I	TTAA	2 cut(s)	545, 615
Tru9I	TTAA	2 cut(s)	545, 615
TscAI	CASTG	2 cut(s)	61, 506
TseFI	GTSAC	4 cut(s)	487, 605, 847, 953
Tsp45I	GTSAC	4 cut(s)	487, 605, 847, 953
TspDTI	ATGAA	5 cut(s)	16, 148, 350, 1362, 1461
TspRI	CASTG	2 cut(s)	61, 506
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	4 cut(s)	434, 790, 1001, 1218
XbaI	TCTAGA	1 cut(s)	1039
XspI	CTAG	4 cut(s)	153, 903, 1040, 1101
ZrmI	AGTACT	1 cut(s)	1526
Zsp2I	ATGCAT	1 cut(s)	1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.