Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003709

Physical Location & Seq

Genomic Coordinates Forward (+)

803764 .. 806053

Gene Structure 2290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54452

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGTGTATCAAGCCCTTCGTGACTTTGCTCCATTATGATCCTCCCCAAGCACTTGAGGATCTGTATGGCGGGTTCTTAAGCCCTAACATAATAAATGATTACGGAGATTATGTGGATTTCTGCTTCAAGACATTTGGTGATCGAGTGAAGCACTGGATCACAATGAACGAACCTAACGGATTTGCTATTAGTGGCTACGACGGCGGAACCTTTGCACCAGGTCGGTGTTCTAACTATGAGGGAAATTGCACTTCCGGTAACTCTGCGACTGAACCCTACATTGCGGCACACCATTTGCTTCTTGCACATTCAGCCGCTGTCAAAATATACAAGGACAAATATCAAGCTTCCCAAAAGGGACAGATCGGGATCACAGTAGTGACTCACTGGTGGAAACCTAAGTTCCCAACACAGCTGGCAAGTCGGACGGCCACCCTTAGGTCACTTGATTTTATGTTCGGATGGTTTGCCAATCCTATAATTCATGGTGATTATCCAAAGGTCATGCGATCTTTGGTCGGGAATCGATTGCCGAAATTTACAGAAGCCGAATCGAAGCAGATAAAAGGCTCCCTTGATTTTCTTGGGTTGAATTACTACACATCATATTATACAGAAGATGCACCAGCTTCATCCAACGATGTCAACCAGAGTTGGACCGCAGACAGACAAGTAGCTGCTTCTACTACTGATAAAAATGGGGCTCTTATTGGTGCAGCGACTGATTTGGATTGGCTTTTCGTTTATCCGAAGGGGATCAGAGAGGTTCTTGTGTATATAAAGGAAAAGTACAATAACCCTGACATTTACATAACTGAGAATGGATATTCATATGGATATAATGCCTCAATGCCAATTCAAGAAGCTCGTAAGGATAATTTGAGAATAAGATACCATCACGACCATCTGTGGTATCTTTTGAAAGCTATTAAGGATGGGGTTAAAGTGAAGGGATACTATGCATGGTCATTTTTTGATGACTTCGAATGGGATGCCGGTTACACAGTTGGGTTTGGCCTAACATTAGTTGATGTCAATGATAATCTGAGAAGATACCTCAAATATTCTGCCTATTGGTTCAAGATGTTCCTCCTGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

366

Amino Acids

41.88

Weight (kDa)

6.83

Isoelectric Point (pI)

24.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	3 - 362	4.9e-100	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44480 AT2G44480 AT2G44480 AT2G44480 AT2G44480
fragaria_vesca	FvH4_7g00214 FvH4_7g00214 FvH4_7g00214 FvH4_7g00214 FvH4_7g00250 FvH4_7g00270
malus_domestica	MD07G1003400.v1.1
prunus_persica	Prupe.2G005100_v2.0.a1
pyrus_communis	pycom07g00340
rosa_chinensis	RchiOBHm_Chr1g0313661 RchiOBHm_Chr1g0313711 RchiOBHm_Chr1g0313741
rosa_laevigata	RLG00000030780 RLG00000030783 RLG00000030785
rosa_multiflora	Rmu_sc0009740.1_g000006 Rmu_ssc0000027.1_g000024
rosa_roxburghii	Rroxscaffold_4G00332110 Rroxscaffold_4G00332130
rosa_rugosa	RorugPtG0005800 RorugPtG0005900.1 RorugPtG0006000.1
rosa_samantha	Rh1AG005800 Rh1CG008900 Rh1CG009000 Rh1DG004000 Rh1DG004200
rosa_wichuraiana	Rw1G000340 Rw1G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	69, 204, 284, 315, 660
AclWI	GGATC	5 cut(s)	32, 66, 164, 377, 764
AcoI	YGGCCR	1 cut(s)	429
AcsI	RAATTY	1 cut(s)	536
AfaI	GTAC	1 cut(s)	791
AfiI	CCNNNNNNNGG	1 cut(s)	438
AflII	CTTAAG	1 cut(s)	76
AgsI	TTSAA	5 cut(s)	127, 592, 860, 922, 1081
AjnI	CCWGG	1 cut(s)	217
AleI	CACNNNNGTG	1 cut(s)	377
AluBI	AGCT	6 cut(s)	347, 415, 629, 677, 866, 926
AluI	AGCT	6 cut(s)	347, 415, 629, 677, 866, 926
AlwI	GGATC	5 cut(s)	32, 66, 164, 377, 764
AlwNI	CAGNNNCTG	2 cut(s)	317, 722
AoxI	GGCC	2 cut(s)	429, 1015
ApeKI	GCWGC	2 cut(s)	677, 716
ApoI	RAATTY	1 cut(s)	536
AspS9I	GGNCC	1 cut(s)	657
AsuHPI	GGTGA	2 cut(s)	149, 500
AsuII	TTCGAA	1 cut(s)	984
AvaII	GGWCC	1 cut(s)	657
AxyI	CCTNAGG	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	706
BbvI	GCAGC	2 cut(s)	664, 728
BccI	CCATC	4 cut(s)	456, 903, 912, 929
BceAI	ACGGC	2 cut(s)	217, 444
BcgI	CGANNNNNNTGC	2 cut(s)	974, 1008
BciT130I	CCWGG	1 cut(s)	219
BciVI	GTATCC	1 cut(s)	947
BfrI	CTTAAG	1 cut(s)	76
BfuI	GTATCC	1 cut(s)	947
BisI	GCNGC	4 cut(s)	285, 315, 678, 717
BlsI	GCNGC	4 cut(s)	286, 316, 679, 718
Bme1390I	CCNGG	1 cut(s)	219
Bme18I	GGWCC	1 cut(s)	657
BmgT120I	GGNCC	1 cut(s)	657
BmiI	GGNNCC	2 cut(s)	208, 571
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	2 cut(s)	610, 982
Bpu14I	TTCGAA	1 cut(s)	984
BpuEI	CTTGAG	1 cut(s)	74
Bsa29I	ATCGAT	1 cut(s)	526
BsaBI	GATNNNNATC	1 cut(s)	368
BsaWI	WCCGGW	1 cut(s)	254
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	438
Bse118I	RCCGGY	1 cut(s)	995
Bse1I	ACTGG	2 cut(s)	158, 392
Bse21I	CCTNAGG	1 cut(s)	437
Bse3DI	GCAATG	1 cut(s)	279
Bse8I	GATNNNNATC	1 cut(s)	368
BseBI	CCWGG	1 cut(s)	219
BseCI	ATCGAT	1 cut(s)	526
BseGI	GGATG	4 cut(s)	467, 632, 940, 997
BseJI	GATNNNNATC	1 cut(s)	368
BseLI	CCNNNNNNNGG	1 cut(s)	438
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	2 cut(s)	807, 1037
BseNI	ACTGG	2 cut(s)	158, 392
BseXI	GCAGC	2 cut(s)	664, 728
BsgI	GTGCAG	2 cut(s)	735, 1079
BshFI	GGCC	2 cut(s)	431, 1017
BshVI	ATCGAT	1 cut(s)	526
BsiSI	CCGG	2 cut(s)	255, 996
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	438
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	2 cut(s)	431, 1017
Bsp119I	TTCGAA	1 cut(s)	984
Bsp1286I	GDGCHC	1 cut(s)	706
Bsp143I	GATC	8 cut(s)	37, 58, 139, 156, 363, 369, 509, 756
BspACI	CCGC	5 cut(s)	69, 204, 284, 315, 660
BspANI	GGCC	2 cut(s)	431, 1017
BspCNI	CTCAG	2 cut(s)	808, 1038
BspDI	ATCGAT	1 cut(s)	526
BspLI	GGNNCC	2 cut(s)	208, 571
BspPI	GGATC	5 cut(s)	32, 66, 164, 377, 764
BspT104I	TTCGAA	1 cut(s)	984
BspTI	CTTAAG	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	995
BsrI	ACTGG	2 cut(s)	158, 392
BssAI	RCCGGY	1 cut(s)	995
BssMI	GATC	8 cut(s)	37, 58, 139, 156, 363, 369, 509, 756
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	2 cut(s)	376, 1006
BstAFI	CTTAAG	1 cut(s)	76
BstBI	TTCGAA	1 cut(s)	984
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	4 cut(s)	399, 437, 816, 1046
BstF5I	GGATG	4 cut(s)	467, 632, 940, 997
BstKTI	GATC	8 cut(s)	40, 61, 142, 159, 366, 372, 512, 759
BstMBI	GATC	8 cut(s)	37, 58, 139, 156, 363, 369, 509, 756
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 311
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	664, 728
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
Bsu15I	ATCGAT	1 cut(s)	526
Bsu36I	CCTNAGG	1 cut(s)	437
BsuI	GTATCC	1 cut(s)	947
BsuRI	GGCC	2 cut(s)	431, 1017
BsuTUI	ATCGAT	1 cut(s)	526
BtsCI	GGATG	4 cut(s)	467, 632, 940, 997
BtsIMutI	CAGTG	3 cut(s)	151, 385, 1096
Cac8I	GCNNGC	1 cut(s)	417
CaiI	CAGNNNCTG	2 cut(s)	317, 722
Cfr10I	RCCGGY	1 cut(s)	995
Cfr13I	GGNCC	1 cut(s)	657
ClaI	ATCGAT	1 cut(s)	526
CsiI	ACCWGGT	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	790
CviAII	CATG	3 cut(s)	485, 505, 963
CviQI	GTAC	1 cut(s)	790
DdeI	CTNAG	4 cut(s)	399, 437, 816, 1046
DpnI	GATC	8 cut(s)	39, 60, 141, 158, 365, 371, 511, 758
DpnII	GATC	8 cut(s)	37, 58, 139, 156, 363, 369, 509, 756
EaeI	YGGCCR	1 cut(s)	429
EciI	GGCGGA	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	706
Eco47I	GGWCC	1 cut(s)	657
Eco81I	CCTNAGG	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	217
EcoT22I	ATGCAT	1 cut(s)	964
EcoT38I	GRGCYC	1 cut(s)	706
FaeI	CATG	3 cut(s)	488, 508, 966
FalI	AAGNNNNNCTT	2 cut(s)	558, 590
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	3 cut(s)	484, 504, 962
FauI	CCCGC	1 cut(s)	62
FauNDI	CATATG	1 cut(s)	832
Fnu4HI	GCNGC	4 cut(s)	285, 315, 678, 717
FokI	GGATG	4 cut(s)	474, 619, 947, 1004
FriOI	GRGCYC	1 cut(s)	706
Fsp4HI	GCNGC	4 cut(s)	285, 315, 678, 717
GluI	GCNGC	4 cut(s)	285, 315, 678, 717
HaeIII	GGCC	2 cut(s)	431, 1017
HapII	CCGG	2 cut(s)	255, 996
Hin1II	CATG	3 cut(s)	488, 508, 966
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HindIII	AAGCTT	1 cut(s)	345
HinfI	GANTC	3 cut(s)	382, 523, 551
HpaII	CCGG	2 cut(s)	255, 996
HphI	GGTGA	2 cut(s)	149, 500
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	5 cut(s)	426, 461, 750, 761, 1047
Hpy188III	TCNNGA	7 cut(s)	19, 127, 367, 520, 860, 899, 1081
Hpy8I	GTNNAC	1 cut(s)	646
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	3 cut(s)	25, 745, 943
HpyCH4III	ACNGT	2 cut(s)	376, 1006
HpyCH4V	TGCA	7 cut(s)	215, 249, 305, 623, 716, 962, 1096
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 311
HpyF3I	CTNAG	4 cut(s)	399, 437, 816, 1046
Hsp92II	CATG	3 cut(s)	488, 508, 966
Kzo9I	GATC	8 cut(s)	37, 58, 139, 156, 363, 369, 509, 756
LmnI	GCTCC	2 cut(s)	33, 575
Lsp1109I	GCAGC	2 cut(s)	664, 728
LweI	GCATC	2 cut(s)	610, 982
MabI	ACCWGGT	1 cut(s)	217
MaeIII	GTNAC	5 cut(s)	19, 257, 379, 441, 998
MalI	GATC	8 cut(s)	39, 60, 141, 158, 365, 371, 511, 758
MboI	GATC	8 cut(s)	37, 58, 139, 156, 363, 369, 509, 756
MboII	GAAGA	2 cut(s)	629, 1062
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	706
MluCI	AATT	6 cut(s)	244, 480, 536, 592, 855, 877
MlyI	GAGTC	1 cut(s)	376
MmeI	TCCRAC	3 cut(s)	404, 635, 660
MnlI	CCTC	7 cut(s)	49, 51, 232, 757, 856, 1067, 1100
Mph1103I	ATGCAT	1 cut(s)	964
MseI	TTAA	3 cut(s)	77, 930, 942
MslI	CAYNNNNRTG	1 cut(s)	377
MspA1I	CMGCKG	2 cut(s)	317, 415
MspCI	CTTAAG	1 cut(s)	76
MspI	CCGG	2 cut(s)	255, 996
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	201, 311
NdeI	CATATG	1 cut(s)	832
NdeII	GATC	8 cut(s)	37, 58, 139, 156, 363, 369, 509, 756
NlaIII	CATG	3 cut(s)	488, 508, 966
NlaIV	GGNNCC	2 cut(s)	208, 571
NmuCI	GTSAC	3 cut(s)	19, 379, 441
NsiI	ATGCAT	1 cut(s)	964
NspV	TTCGAA	1 cut(s)	984
OliI	CACNNNNGTG	1 cut(s)	377
PfeI	GAWTC	2 cut(s)	523, 551
PkrI	GCNGC	4 cut(s)	286, 316, 679, 718
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	2 cut(s)	208, 571
PspPI	GGNCC	1 cut(s)	657
PsrI	GAACNNNNNNTAC	2 cut(s)	56, 88
PstNI	CAGNNNCTG	2 cut(s)	317, 722
PsuI	RGATCY	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	415
RsaI	GTAC	1 cut(s)	791
RsaNI	GTAC	1 cut(s)	790
RseI	CAYNNNNRTG	1 cut(s)	377
SaqAI	TTAA	3 cut(s)	77, 930, 942
SatI	GCNGC	4 cut(s)	285, 315, 678, 717
Sau3AI	GATC	8 cut(s)	37, 58, 139, 156, 363, 369, 509, 756
Sau96I	GGNCC	1 cut(s)	657
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	706
SexAI	ACCWGGT	1 cut(s)	217
SfaNI	GCATC	2 cut(s)	610, 982
SfuI	TTCGAA	1 cut(s)	984
SinI	GGWCC	1 cut(s)	657
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	2 cut(s)	53, 76
SmoI	CTYRAG	2 cut(s)	53, 76
Sse9I	AATT	6 cut(s)	244, 480, 536, 592, 855, 877
SsiI	CCGC	5 cut(s)	69, 204, 284, 315, 660
SspI	AATATT	1 cut(s)	1064
StyD4I	CCNGG	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	376, 1006
TaqI	TCGA	4 cut(s)	142, 526, 554, 984
TasI	AATT	6 cut(s)	244, 480, 536, 592, 855, 877
TatI	WGTACW	1 cut(s)	789
TauI	GCSGC	2 cut(s)	287, 317
TfiI	GAWTC	2 cut(s)	523, 551
Tru1I	TTAA	3 cut(s)	77, 930, 942
Tru9I	TTAA	3 cut(s)	77, 930, 942
TscAI	CASTG	2 cut(s)	158, 392
TseFI	GTSAC	3 cut(s)	19, 379, 441
TseI	GCWGC	2 cut(s)	677, 716
Tsp45I	GTSAC	3 cut(s)	19, 379, 441
TspDTI	ATGAA	4 cut(s)	179, 473, 621, 819
TspGWI	ACGGA	2 cut(s)	117, 192
TspRI	CASTG	2 cut(s)	158, 392
Vha464I	CTTAAG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	657
XapI	RAATTY	1 cut(s)	536
Zsp2I	ATGCAT	1 cut(s)	964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.