Prupe.2G005100_v2.0.a1

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
496543 .. 499981
3439 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G005100.1

Sequence Viewer

Length: 1548 bp
ATGGGTGTTGAAGGAAATCATCGTCTTCTTTTGTGCCTCATAACTCTTGCCTTATCAACTGCTGCTGCTCATGGGGCTGCTGTGAAACCGAGTCATGACTCAATGCCATTCAATCGAACTAGCTTCCCAGCTGGGTTCGTATTTGGAGCTGGTTCAGCTGCTTATCAGTCTGAAGGAGCAGCTCTTACCCATGGAAGGGGACTAAGTATATGGGATACCTTCACTAGGAAGCATCCAGAAAAAATTTCCGATGGTAGTAATGGTGATGAAGCCAATGATTTTTACCATCACTATAAGGAGGACGTAAAACTGATTAAAAAGATCGGCTTGGACTCCTTCAGATTTTCAATCTCGTGGCCAAGAATACTACCTAAGGGAACAGTTAAAGGTGGAGTGAACCAAGAAGGCGTCAAATTCTACAACAATCTTATAGATGAGCTCTTATCCAATGGAATAGCGCCTTTTGTCACCCTTTTCCATTGGGATCTACCACAAACACTTGAAGACGAGTATGATGGATTTTTGAGCCCTAAGATTGTTGATGATTTTCAAGACTACGCCAATTTTTGTTTCAAAACATTTGGCGACCGGGTCAAGCATTGGGTAACATTGAATGAACCTGTTACATATTGTGTTAATGGGTACAACGGCGGCACTTATGCACCGGGTCGATGTTCAAACTACGTCGGAAACTGCGCCACCGGCAACTCTGCCACTGAGCCTTACATTGTGGGTCATCATCTACTACTTGCTCATGCATATGCTGTGAAATTATACAGGGACAAGTATCAGGCCTTTCAGAAAGGACAAATTGGGATTTCCGTTGTGACATTCTGGTATTTACCAAAGTCGGGAACGGCTGCAAGCAAGAGGGCAGCCTCTAAGGCTCTTGATTTTATATTAGGATGGTTTGCTCATCCTGTTACATTCGGTGAGTATCCCCAAAGCATGAGATCTTCAGTGGGAGATCGTTTGCCTAAATTCAGCGCAGCAGAATTAAAACTGCTAAAAGGATCTATAGATTTCCTTGGTGTCAATTATTACACAGCTAGTTATGCAGATCCTCCCTCACTCTCCGCTGCCACTTCTACTGTTAACCAAAGTTTCTATGGAGACATGGATATCTCTCTCTCTACGGACAAAAATGGGGTTCCTTTGGGTACACCGACTGCTTTGAGCTGGCTACACATCTACCCAAAGGGAATTCGAGAGCTTATGCTACATATAAAGGAAAAGTACAACGATCCGGAGATTTACATTACTGAAAACGGTGTTGGTGATGCAAATAATAGCTCCCTGCCTATTAAGACTGTCCTCAAGGATAGTACAAGGATAAGATACCATTATCTCCATCTTTCATATCTTTCAGAAGCCATCAAAGAGGGTGTTAAAGTGAAGGGATACTTTGCGTGGGCATTTGCGGATGTGTATGAATGGAACTCAGGCTACACTGTTCGATTTGGACTCGCTTATGTTGATTACAAAAACAAATTTAAAAGAACTCTCAAGTACTCTGCCTATTGGTTCAAGATGTTCCTCCTCAAATGA

Protein Analysis

516

Amino Acids

57.56

Weight (kDa)

8.7

Isoelectric Point (pI)

24.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 1246
AciI CCGC 3 cut(s) 651, 1077, 1421
AclWI GGATC 4 cut(s) 492, 1021, 1055, 1238
AcoI YGGCCR 1 cut(s) 356
AcsI RAATTY 5 cut(s) 243, 413, 980, 1203, 1490
AcuI CTGAAG 3 cut(s) 192, 322, 942
AcyI GRCGYC 1 cut(s) 408
AfaI GTAC 5 cut(s) 644, 1162, 1238, 1327, 1511
AfiI CCNNNNNNNGG 4 cut(s) 195, 196, 225, 851
AgsI TTSAA 9 cut(s) 11, 112, 348, 503, 551, 574, 613, 678, 1528
AjuI GAANNNNNNNTTGG 4 cut(s) 554, 586, 1257, 1289
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 1 cut(s) 1107
AlwI GGATC 4 cut(s) 492, 1021, 1055, 1238
Aor13HI TCCGGA 1 cut(s) 1246
AoxI GGCC 2 cut(s) 356, 792
ApeKI GCWGC 9 cut(s) 62, 65, 77, 158, 179, 860, 875, 989, 1079
ApoI RAATTY 5 cut(s) 243, 413, 980, 1203, 1490
AspLEI GCGC 3 cut(s) 460, 698, 989
AsuC2I CCSGG 2 cut(s) 590, 666
AsuHPI GGTGA 4 cut(s) 275, 460, 944, 1289
AxyI CCTNAGG 1 cut(s) 372
BalI TGGCCA 1 cut(s) 358
BanII GRGCYC 2 cut(s) 441, 530
BauI CACGAG 1 cut(s) 352
BbsI GAAGAC 2 cut(s) 17, 510
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 9 cut(s) 49, 52, 64, 145, 191, 847, 887, 1001, 1066
BccI CCATC 6 cut(s) 245, 294, 509, 900, 1359, 1382
BceAI ACGGC 2 cut(s) 664, 873
BciVI GTATCC 3 cut(s) 208, 948, 1394
BcnI CCSGG 2 cut(s) 590, 666
BcoDI GTCTC 1 cut(s) 1107
BfaI CTAG 3 cut(s) 120, 225, 1050
BfmI CTRYAG 1 cut(s) 1017
BfoI RGCGCY 1 cut(s) 461
BfuI GTATCC 3 cut(s) 208, 948, 1394
BglI GCCNNNNNGGC 1 cut(s) 884
BglII AGATCT 1 cut(s) 953
BmcAI AGTACT 1 cut(s) 1511
Bme1390I CCNGG 2 cut(s) 590, 666
BmiI GGNNCC 1 cut(s) 1152
BmrFI CCNGG 2 cut(s) 590, 666
BmsI GCATC 2 cut(s) 241, 1270
BpiI GAAGAC 2 cut(s) 17, 510
BpuEI CTTGAG 2 cut(s) 1301, 1490
BpuMI CCSGG 2 cut(s) 590, 666
BsaHI GRCGYC 1 cut(s) 408
BsaJI CCNNGG 2 cut(s) 190, 1027
BsaWI WCCGGW 1 cut(s) 1246
Bsc4I CCNNNNNNNGG 4 cut(s) 195, 196, 225, 851
Bse118I RCCGGY 1 cut(s) 701
Bse21I CCTNAGG 1 cut(s) 372
BseAI TCCGGA 1 cut(s) 1246
BseDI CCNNGG 2 cut(s) 190, 1027
BseGI GGATG 4 cut(s) 232, 911, 916, 1429
BseLI CCNNNNNNNGG 4 cut(s) 195, 196, 225, 851
BseMII CTCAG 2 cut(s) 708, 1455
BseRI GAGGAG 1 cut(s) 1529
BseXI GCAGC 9 cut(s) 49, 52, 64, 145, 191, 847, 887, 1001, 1066
BseYI CCCAGC 2 cut(s) 127, 131
Bsh1285I CGRYCG 1 cut(s) 589
BshFI GGCC 2 cut(s) 358, 794
BsiEI CGRYCG 1 cut(s) 589
BsiHKAI GWGCWC 1 cut(s) 441
BsiSI CCGG 4 cut(s) 589, 665, 702, 1247
BslFI GGGAC 2 cut(s) 213, 794
BslI CCNNNNNNNGG 4 cut(s) 195, 196, 225, 851
BsmAI GTCTC 1 cut(s) 1107
BsmFI GGGAC 2 cut(s) 213, 794
BsnI GGCC 2 cut(s) 358, 794
Bsp1286I GDGCHC 2 cut(s) 441, 530
Bsp13I TCCGGA 1 cut(s) 1246
Bsp143I GATC 7 cut(s) 321, 484, 953, 967, 1013, 1060, 1243
Bsp19I CCATGG 1 cut(s) 190
BspACI CCGC 3 cut(s) 651, 1077, 1421
BspANI GGCC 2 cut(s) 358, 794
BspCNI CTCAG 2 cut(s) 709, 1454
BspEI TCCGGA 1 cut(s) 1246
BspHI TCATGA 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 1152
BspPI GGATC 4 cut(s) 492, 1021, 1055, 1238
BsrFI RCCGGY 1 cut(s) 701
BssAI RCCGGY 1 cut(s) 701
BssECI CCNNGG 2 cut(s) 190, 1027
BssMI GATC 7 cut(s) 321, 484, 953, 967, 1013, 1060, 1243
BssNI GRCGYC 1 cut(s) 408
BssSI CACGAG 1 cut(s) 352
BssT1I CCWWGG 2 cut(s) 190, 1027
Bst2BI CACGAG 1 cut(s) 352
Bst4CI ACNGT 5 cut(s) 382, 1093, 1271, 1312, 1453
BstACI GRCGYC 1 cut(s) 408
BstC8I GCNNGC 2 cut(s) 865, 1181
BstDEI CTNAG 6 cut(s) 203, 372, 531, 717, 882, 1441
BstDSI CCRYGG 1 cut(s) 190
BstENI CCTNNNNNAGG 1 cut(s) 223
BstF5I GGATG 4 cut(s) 232, 911, 916, 1429
BstH2I RGCGCY 1 cut(s) 461
BstHHI GCGC 3 cut(s) 460, 698, 989
BstKTI GATC 7 cut(s) 324, 487, 956, 970, 1016, 1063, 1246
BstMAI GTCTC 1 cut(s) 1107
BstMBI GATC 7 cut(s) 321, 484, 953, 967, 1013, 1060, 1243
BstMCI CGRYCG 1 cut(s) 589
BstMWI GCNNNNNNNGC 5 cut(s) 74, 155, 702, 884, 1055
BstSCI CCNGG 2 cut(s) 588, 664
BstSFI CTRYAG 1 cut(s) 1017
BstV1I GCAGC 9 cut(s) 49, 52, 64, 145, 191, 847, 887, 1001, 1066
BstV2I GAAGAC 2 cut(s) 17, 510
BstX2I RGATCY 4 cut(s) 484, 953, 1013, 1060
BstYI RGATCY 4 cut(s) 484, 953, 1013, 1060
Bsu36I CCTNAGG 1 cut(s) 372
BsuI GTATCC 3 cut(s) 208, 948, 1394
BsuRI GGCC 2 cut(s) 358, 794
BtgI CCRYGG 1 cut(s) 190
BtsCI GGATG 4 cut(s) 232, 911, 916, 1429
BtsIMutI CAGTG 3 cut(s) 714, 966, 1449
Cac8I GCNNGC 2 cut(s) 865, 1181
CciI TCATGA 1 cut(s) 94
CfoI GCGC 3 cut(s) 460, 698, 989
Cfr10I RCCGGY 1 cut(s) 701
CseI GACGC 1 cut(s) 397
Csp6I GTAC 5 cut(s) 643, 1161, 1237, 1326, 1510
CviAII CATG 6 cut(s) 71, 95, 191, 755, 949, 1117
CviQI GTAC 5 cut(s) 643, 1161, 1237, 1326, 1510
DdeI CTNAG 6 cut(s) 203, 372, 531, 717, 882, 1441
DpnI GATC 7 cut(s) 323, 486, 955, 969, 1015, 1062, 1245
DpnII GATC 7 cut(s) 321, 484, 953, 967, 1013, 1060, 1243
DraI TTTAAA 1 cut(s) 1495
EaeI YGGCCR 1 cut(s) 356
Ecl136II GAGCTC 1 cut(s) 439
Eco130I CCWWGG 2 cut(s) 190, 1027
Eco147I AGGCCT 1 cut(s) 794
Eco24I GRGCYC 2 cut(s) 441, 530
Eco32I GATATC 1 cut(s) 1123
Eco53kI GAGCTC 1 cut(s) 439
Eco57I CTGAAG 3 cut(s) 192, 322, 942
Eco81I CCTNAGG 1 cut(s) 372
EcoICRI GAGCTC 1 cut(s) 439
EcoNI CCTNNNNNAGG 1 cut(s) 223
EcoRI GAATTC 1 cut(s) 1203
EcoRV GATATC 1 cut(s) 1123
EcoT14I CCWWGG 2 cut(s) 190, 1027
EcoT22I ATGCAT 1 cut(s) 760
EcoT38I GRGCYC 2 cut(s) 441, 530
ErhI CCWWGG 2 cut(s) 190, 1027
FaeI CATG 6 cut(s) 74, 98, 194, 758, 952, 1120
FalI AAGNNNNNCTT 4 cut(s) 311, 343, 1388, 1420
FaqI GGGAC 2 cut(s) 213, 794
FatI CATG 6 cut(s) 70, 94, 190, 754, 948, 1116
FauNDI CATATG 1 cut(s) 760
FokI GGATG 4 cut(s) 219, 903, 918, 1436
FriOI GRGCYC 2 cut(s) 441, 530
FspBI CTAG 3 cut(s) 120, 225, 1050
GlaI GCGC 3 cut(s) 459, 697, 988
GsaI CCCAGC 2 cut(s) 131, 135
HaeII RGCGCY 1 cut(s) 461
HaeIII GGCC 2 cut(s) 358, 794
HapII CCGG 4 cut(s) 589, 665, 702, 1247
HgaI GACGC 1 cut(s) 397
HhaI GCGC 3 cut(s) 460, 698, 989
Hin1I GRCGYC 1 cut(s) 408
Hin1II CATG 6 cut(s) 74, 98, 194, 758, 952, 1120
Hin6I GCGC 3 cut(s) 458, 696, 987
HinP1I GCGC 3 cut(s) 458, 696, 987
HincII GTYRAC 1 cut(s) 1096
HindII GTYRAC 1 cut(s) 1096
HinfI GANTC 4 cut(s) 91, 98, 332, 1464
HpaI GTTAAC 1 cut(s) 1096
HpaII CCGG 4 cut(s) 589, 665, 702, 1247
HphI GGTGA 4 cut(s) 275, 460, 944, 1289
Hpy166II GTNNAC 3 cut(s) 397, 1096, 1163
Hpy188I TCNGA 6 cut(s) 172, 250, 341, 689, 801, 1369
Hpy188III TCNNGA 8 cut(s) 95, 236, 551, 852, 890, 1208, 1247, 1528
Hpy8I GTNNAC 3 cut(s) 397, 1096, 1163
Hpy99I CGWCG 1 cut(s) 689
HpyAV CCTTC 7 cut(s) 5, 167, 189, 229, 346, 398, 1390
HpyCH4III ACNGT 5 cut(s) 382, 1093, 1271, 1312, 1453
HpyCH4IV ACGT 2 cut(s) 303, 684
HpyCH4V TGCA 5 cut(s) 662, 758, 863, 1058, 1283
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 155, 702, 884, 1055
HpyF3I CTNAG 6 cut(s) 203, 372, 531, 717, 882, 1441
HpySE526I ACGT 2 cut(s) 303, 684
Hsp92I GRCGYC 1 cut(s) 408
Hsp92II CATG 6 cut(s) 74, 98, 194, 758, 952, 1120
HspAI GCGC 3 cut(s) 458, 696, 987
Kpn2I TCCGGA 1 cut(s) 1246
KspAI GTTAAC 1 cut(s) 1096
Kzo9I GATC 7 cut(s) 321, 484, 953, 967, 1013, 1060, 1243
LmnI GCTCC 3 cut(s) 146, 176, 1298
Lsp1109I GCAGC 9 cut(s) 49, 52, 64, 145, 191, 847, 887, 1001, 1066
LweI GCATC 2 cut(s) 241, 1270
MaeI CTAG 3 cut(s) 120, 225, 1050
MaeII ACGT 2 cut(s) 303, 684
MaeIII GTNAC 5 cut(s) 466, 604, 622, 826, 922
MalI GATC 7 cut(s) 323, 486, 955, 969, 1015, 1062, 1245
MboI GATC 7 cut(s) 321, 484, 953, 967, 1013, 1060, 1243
MboII GAAGA 3 cut(s) 17, 515, 948
MflI RGATCY 4 cut(s) 484, 953, 1013, 1060
MhlI GDGCHC 2 cut(s) 441, 530
MlsI TGGCCA 1 cut(s) 358
MluNI TGGCCA 1 cut(s) 358
MlyI GAGTC 4 cut(s) 92, 100, 326, 1458
MmeI TCCRAC 1 cut(s) 667
MnlI CCTC 9 cut(s) 47, 292, 864, 889, 1074, 1078, 1325, 1375, 1547
Mox20I TGGCCA 1 cut(s) 358
Mph1103I ATGCAT 1 cut(s) 760
MroI TCCGGA 1 cut(s) 1246
MscI TGGCCA 1 cut(s) 358
MseI TTAA 8 cut(s) 315, 384, 636, 998, 1095, 1305, 1389, 1494
MslI CAYNNNNRTG 1 cut(s) 759
Msp20I TGGCCA 1 cut(s) 358
MspA1I CMGCKG 3 cut(s) 131, 158, 1079
MspI CCGG 4 cut(s) 589, 665, 702, 1247
MspR9I CCNGG 2 cut(s) 590, 666
MwoI GCNNNNNNNGC 5 cut(s) 74, 155, 702, 884, 1055
NciI CCSGG 2 cut(s) 590, 666
NcoI CCATGG 1 cut(s) 190
NdeI CATATG 1 cut(s) 760
NdeII GATC 7 cut(s) 321, 484, 953, 967, 1013, 1060, 1243
NlaIII CATG 6 cut(s) 74, 98, 194, 758, 952, 1120
NlaIV GGNNCC 1 cut(s) 1152
NmuCI GTSAC 2 cut(s) 466, 826
NsiI ATGCAT 1 cut(s) 760
PagI TCATGA 1 cut(s) 94
PceI AGGCCT 1 cut(s) 794
PflFI GACNNNGTC 1 cut(s) 590
PleI GAGTC 4 cut(s) 92, 99, 326, 1458
PpsI GAGTC 4 cut(s) 92, 99, 326, 1458
Psp124BI GAGCTC 1 cut(s) 441
PspFI CCCAGC 2 cut(s) 127, 131
PspN4I GGNNCC 1 cut(s) 1152
PsrI GAACNNNNNNTAC 2 cut(s) 1430, 1462
PsuI RGATCY 4 cut(s) 484, 953, 1013, 1060
PsyI GACNNNGTC 1 cut(s) 590
PvuII CAGCTG 2 cut(s) 131, 158
RsaI GTAC 5 cut(s) 644, 1162, 1238, 1327, 1511
RsaNI GTAC 5 cut(s) 643, 1161, 1237, 1326, 1510
RseI CAYNNNNRTG 1 cut(s) 759
SacI GAGCTC 1 cut(s) 441
SaqAI TTAA 8 cut(s) 315, 384, 636, 998, 1095, 1305, 1389, 1494
Sau3AI GATC 7 cut(s) 321, 484, 953, 967, 1013, 1060, 1243
ScaI AGTACT 1 cut(s) 1511
SchI GAGTC 4 cut(s) 92, 100, 326, 1458
ScrFI CCNGG 2 cut(s) 590, 666
SduI GDGCHC 2 cut(s) 441, 530
SfaNI GCATC 2 cut(s) 241, 1270
SfcI CTRYAG 1 cut(s) 1017
SmiMI CAYNNNNRTG 1 cut(s) 759
SmlI CTYRAG 2 cut(s) 1316, 1505
SmoI CTYRAG 2 cut(s) 1316, 1505
SseBI AGGCCT 1 cut(s) 794
SsiI CCGC 3 cut(s) 651, 1077, 1421
SspMI CTAG 3 cut(s) 120, 225, 1050
SstI GAGCTC 1 cut(s) 441
StuI AGGCCT 1 cut(s) 794
StyD4I CCNGG 2 cut(s) 588, 664
StyI CCWWGG 2 cut(s) 190, 1027
TaaI ACNGT 5 cut(s) 382, 1093, 1271, 1312, 1453
TaiI ACGT 2 cut(s) 306, 687
TaqI TCGA 4 cut(s) 115, 670, 1207, 1456
TatI WGTACW 3 cut(s) 1236, 1325, 1509
TauI GCSGC 1 cut(s) 654
Tru1I TTAA 8 cut(s) 315, 384, 636, 998, 1095, 1305, 1389, 1494
Tru9I TTAA 8 cut(s) 315, 384, 636, 998, 1095, 1305, 1389, 1494
TscAI CASTG 3 cut(s) 721, 966, 1456
TseFI GTSAC 2 cut(s) 466, 826
TseI GCWGC 9 cut(s) 62, 65, 77, 158, 179, 860, 875, 989, 1079
Tsp45I GTSAC 2 cut(s) 466, 826
TspDTI ATGAA 4 cut(s) 282, 630, 1347, 1446
TspGWI ACGGA 2 cut(s) 811, 1151
TspRI CASTG 3 cut(s) 721, 966, 1456
Tth111I GACNNNGTC 1 cut(s) 590
XagI CCTNNNNNAGG 1 cut(s) 223
XapI RAATTY 5 cut(s) 243, 413, 980, 1203, 1490
XcmI CCANNNNNNNNNTGG 1 cut(s) 1106
XspI CTAG 3 cut(s) 120, 225, 1050
ZrmI AGTACT 1 cut(s) 1511
Zsp2I ATGCAT 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.