FvH4_7g00250

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
848886 .. 853565
4680 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00250.t1

Sequence Viewer

Length: 1620 bp
TGGAGCTCGAGGTCTGAACTGAACTCTATAAATAGGCTTGATTGTATCAGTTACGTGAAAACGCAGCAGTATTCAACATTATATATGGCGTTTGGAGGTTCTGTGTTCTTTTCGTTGCTGCTAGCTTTGGCTGCGGCTGCTAGCTTCTCCTTTGGCACTGCCCGTGCTTACTATATCCCTTTTAACCGAAGCAGTTTTCCGAGTGATTTCCTTTTTGGTGTTGGTTCAGCTGCTTATCAGTCAGAAGGAGCAGCATTAGTCGACGGAAGGGGACCTAGCATCTGGGATACTTTTGTTAGAAAGCATCCAGAAAAGATATGGGATCACAGCACCGGAGATGTAGCAAATGACTTTTACCATCGTTATAAGGAAGATATCAAATTGATGAAGAAAATTGGGTTGGACACCTTCAGATTCTCAATCTCATGGTCCAGATTACTTCCAAAGGGAAAACTCAGCGGAGGAGTCAACCCACTCGGTGTCAAATTTTACAACAATCTCATCAATGAGCTCGTATCAAACGGTATCAAGCCCTTTGTGACTTTACTCCATTATGATCCTCCCCAAGCACTTGATGAACTGTATGGCGGGCTCTTAAGCCGAAACATAATAAACGATTACGGAGATTATGTGGACTTTTGTTTCAAGACTTTTGGTGATCGAGTAAAGCACTGGGTCACGATGAACGAACCTAACGGATTTGCTATTAATGGCTACAACGGCGGTACCTTTGCGCCGGGGCGGTGTTCTAACTATGAGGGTAACTGCACTTCCGGTAACTCAGCGACTGAACCCTACATTGCGGCACACCATTTGCTTCTTGCTCATTCAGCTGCTGTCAAGATATACAAGGACAAATATCAAGCTACCCAAAAGGGACAGATCGGGATTACCATAGTGACTCACTGGTGGAAACCTAAGTTCCCAGAACAGCTGGCTAGCCGAAGAGCCACTCTTAGATCACTCGACTTTATGTTTGGATGGTTTGCCAATCCTATATTTCATGGGGATTATCCGGCGGTCATGAAATCTTTGGTCGGGGATCGATTGCCGAAATTTACAGAAGCTGAGTCGAAGCAGATAAAAGGCTCCCTCGATTTTCTTGGGTTGAATTACTACACAGCATATTACACAGTTGATGAACCAGCTTTATCCAACGCTGTCAACCATAGTTGGAGTGCAGACAGACAAGTCGGTGCTTCTACTACTGATAAAAATGGGGCTCTTATTGGTGCAGCGACTGATCTGGATTGGCTTTTCGTTTATCCGAAAGGGATCAGAGAGGTTCTTTTGTATATAAAGGAGAAGTACAATAACCCAAACATTTATATTACTGAGAATGGATATGCATACGGATATAATGCCTCAACACCAATTCAAGAAGCTCGTAAGGATAATTTGAGGATAAGATACCATCACGACCATTTGTGGTATCTTTTGAAGGCTATTAAGGATGGGGTAAAAGTGAAGGGATACTACGCATGGTCATTTTGGGATGACTTCGAATGGGATGCTGGTTACACAGTTGGGTTTGGCCTAACATTAGTTGATGTCAAGGATAATCTGAAAAGATACCTCAAGTATTCTGCCTATTGGTACAAGATGTTCCTCCTGCACTGA

Protein Analysis

540

Amino Acids

61.28

Weight (kDa)

8.8

Isoelectric Point (pI)

23.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 64 - 535 7.8e-151 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AasI GACNNNNNNGTC 1 cut(s) 1190
Acc65I GGTACC 1 cut(s) 725
AccB1I GGYRCC 1 cut(s) 725
AccI GTMKAC 1 cut(s) 261
AciI CCGC 7 cut(s) 134, 459, 588, 723, 742, 803, 1019
AclWI GGATC 4 cut(s) 330, 551, 1050, 1283
AcsI RAATTY 2 cut(s) 485, 1055
AcuI CTGAAG 1 cut(s) 394
AdeI CACNNNGTG 1 cut(s) 479
AfaI GTAC 3 cut(s) 727, 1310, 1598
AflII CTTAAG 1 cut(s) 595
AgsI TTSAA 5 cut(s) 75, 646, 1111, 1379, 1441
AjuI GAANNNNNNNTTGG 2 cut(s) 383, 415
Alw21I GWGCWC 2 cut(s) 8, 513
AlwI GGATC 4 cut(s) 330, 551, 1050, 1283
AlwNI CAGNNNCTG 4 cut(s) 788, 836, 1067, 1241
Ama87I CYCGRG 1 cut(s) 7
AoxI GGCC 1 cut(s) 1534
ApeKI GCWGC 8 cut(s) 64, 118, 131, 137, 230, 251, 833, 1235
ApoI RAATTY 2 cut(s) 485, 1055
ArsI GACNNNNNNTTYG 2 cut(s) 959, 991
AseI ATTAAT 1 cut(s) 708
Asp718I GGTACC 1 cut(s) 725
AspLEI GCGC 1 cut(s) 736
AspS9I GGNCC 2 cut(s) 272, 429
AsuC2I CCSGG 1 cut(s) 738
AsuHPI GGTGA 1 cut(s) 668
AsuII TTCGAA 1 cut(s) 1503
AsuNHI GCTAGC 3 cut(s) 121, 140, 938
AvaI CYCGRG 1 cut(s) 7
AvaII GGWCC 2 cut(s) 272, 429
BaeI ACNNNNGTAYC 4 cut(s) 279, 312, 709, 742
BanI GGYRCC 1 cut(s) 725
BanII GRGCYC 4 cut(s) 8, 513, 594, 1225
BarI GAAGNNNNNNTAC 4 cut(s) 754, 786, 1460, 1492
Bbv12I GWGCWC 2 cut(s) 8, 513
BbvI GCAGC 8 cut(s) 76, 105, 118, 124, 217, 263, 820, 1247
BccI CCATC 4 cut(s) 366, 975, 1422, 1448
BceAI ACGGC 1 cut(s) 736
BcgI CGANNNNNNTGC 2 cut(s) 1493, 1527
BciVI GTATCC 2 cut(s) 280, 1466
BcnI CCSGG 1 cut(s) 738
BfaI CTAG 4 cut(s) 122, 141, 276, 939
BfrI CTTAAG 1 cut(s) 595
BfuI GTATCC 2 cut(s) 280, 1466
Bme1390I CCNGG 1 cut(s) 738
Bme18I GGWCC 2 cut(s) 272, 429
BmeT110I CYCGRG 1 cut(s) 7
BmgT120I GGNCC 2 cut(s) 272, 429
BmiI GGNNCC 3 cut(s) 273, 727, 1090
BmrFI CCNGG 1 cut(s) 738
BmrI ACTGGG 1 cut(s) 682
BmsI GCATC 3 cut(s) 288, 313, 1501
BmtI GCTAGC 3 cut(s) 125, 144, 942
BmuI ACTGGG 1 cut(s) 682
Bpu14I TTCGAA 1 cut(s) 1503
BpuEI CTTGAG 1 cut(s) 1562
BpuMI CCSGG 1 cut(s) 738
Bsa29I ATCGAT 1 cut(s) 1045
BsaAI YACGTR 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 737
BsaWI WCCGGW 2 cut(s) 332, 773
BsaXI ACNNNNNCTCC 4 cut(s) 87, 117, 615, 645
Bse1I ACTGG 2 cut(s) 677, 911
Bse3DI GCAATG 1 cut(s) 798
BseCI ATCGAT 1 cut(s) 1045
BseDI CCNNGG 1 cut(s) 737
BseGI GGATG 5 cut(s) 304, 986, 1459, 1501, 1516
BseMI GCAATG 1 cut(s) 798
BseMII CTCAG 4 cut(s) 469, 795, 1059, 1326
BseNI ACTGG 2 cut(s) 677, 911
BseRI GAGGAG 1 cut(s) 477
BseXI GCAGC 8 cut(s) 76, 105, 118, 124, 217, 263, 820, 1247
BsgI GTGCAG 4 cut(s) 751, 1200, 1254, 1598
BshFI GGCC 1 cut(s) 1536
BshNI GGYRCC 1 cut(s) 725
BshVI ATCGAT 1 cut(s) 1045
BsiHKAI GWGCWC 2 cut(s) 8, 513
BsiHKCI CYCGRG 1 cut(s) 7
BsiSI CCGG 4 cut(s) 333, 737, 774, 1016
BslFI GGGAC 2 cut(s) 285, 891
BsmFI GGGAC 2 cut(s) 285, 891
BsnI GGCC 1 cut(s) 1536
BsoBI CYCGRG 1 cut(s) 7
Bsp119I TTCGAA 1 cut(s) 1503
Bsp1286I GDGCHC 4 cut(s) 8, 513, 594, 1225
Bsp143I GATC 8 cut(s) 322, 556, 658, 882, 959, 1042, 1243, 1275
BspACI CCGC 7 cut(s) 134, 459, 588, 723, 742, 803, 1019
BspANI GGCC 1 cut(s) 1536
BspCNI CTCAG 4 cut(s) 468, 794, 1060, 1327
BspDI ATCGAT 1 cut(s) 1045
BspHI TCATGA 1 cut(s) 1023
BspLI GGNNCC 3 cut(s) 273, 727, 1090
BspOI GCTAGC 3 cut(s) 125, 144, 942
BspPI GGATC 4 cut(s) 330, 551, 1050, 1283
BspQI GCTCTTC 1 cut(s) 940
BspT104I TTCGAA 1 cut(s) 1503
BspT107I GGYRCC 1 cut(s) 725
BspTI CTTAAG 1 cut(s) 595
BsrDI GCAATG 1 cut(s) 798
BsrI ACTGG 2 cut(s) 677, 911
BssECI CCNNGG 1 cut(s) 737
BssMI GATC 8 cut(s) 322, 556, 658, 882, 959, 1042, 1243, 1275
Bst4CI ACNGT 4 cut(s) 524, 582, 1135, 1525
Bst6I CTCTTC 1 cut(s) 940
BstAFI CTTAAG 1 cut(s) 595
BstBAI YACGTR 1 cut(s) 55
BstBI TTCGAA 1 cut(s) 1503
BstC8I GCNNGC 5 cut(s) 123, 142, 590, 936, 940
BstDEI CTNAG 6 cut(s) 455, 781, 918, 956, 1068, 1335
BstF5I GGATG 5 cut(s) 304, 986, 1459, 1501, 1516
BstHHI GCGC 1 cut(s) 736
BstKTI GATC 8 cut(s) 325, 559, 661, 885, 962, 1045, 1246, 1278
BstMBI GATC 8 cut(s) 322, 556, 658, 882, 959, 1042, 1243, 1275
BstMWI GCNNNNNNNGC 4 cut(s) 131, 137, 720, 830
BstSCI CCNGG 1 cut(s) 736
BstV1I GCAGC 8 cut(s) 76, 105, 118, 124, 217, 263, 820, 1247
Bsu15I ATCGAT 1 cut(s) 1045
BsuI GTATCC 2 cut(s) 280, 1466
BsuRI GGCC 1 cut(s) 1536
BsuTUI ATCGAT 1 cut(s) 1045
BtsCI GGATG 5 cut(s) 304, 986, 1459, 1501, 1516
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 4 cut(s) 156, 670, 904, 1615
Cac8I GCNNGC 5 cut(s) 123, 142, 590, 936, 940
CaiI CAGNNNCTG 4 cut(s) 788, 836, 1067, 1241
CciI TCATGA 1 cut(s) 1023
CfoI GCGC 1 cut(s) 736
Cfr13I GGNCC 2 cut(s) 272, 429
ClaI ATCGAT 1 cut(s) 1045
Csp6I GTAC 3 cut(s) 726, 1309, 1597
CviAII CATG 4 cut(s) 426, 1004, 1024, 1482
CviQI GTAC 3 cut(s) 726, 1309, 1597
DdeI CTNAG 6 cut(s) 455, 781, 918, 956, 1068, 1335
DpnI GATC 8 cut(s) 324, 558, 660, 884, 961, 1044, 1245, 1277
DpnII GATC 8 cut(s) 322, 556, 658, 882, 959, 1042, 1243, 1275
DraIII CACNNNGTG 1 cut(s) 479
DrdI GACNNNNNNGTC 1 cut(s) 1190
DseDI GACNNNNNNGTC 1 cut(s) 1190
Eam1104I CTCTTC 1 cut(s) 940
EarI CTCTTC 1 cut(s) 940
Ecl136II GAGCTC 2 cut(s) 6, 511
Eco24I GRGCYC 4 cut(s) 8, 513, 594, 1225
Eco32I GATATC 1 cut(s) 376
Eco47I GGWCC 2 cut(s) 272, 429
Eco53kI GAGCTC 2 cut(s) 6, 511
Eco57I CTGAAG 1 cut(s) 394
Eco88I CYCGRG 1 cut(s) 7
EcoICRI GAGCTC 2 cut(s) 6, 511
EcoO109I RGGNCCY 1 cut(s) 272
EcoRV GATATC 1 cut(s) 376
EcoT22I ATGCAT 1 cut(s) 1351
EcoT38I GRGCYC 4 cut(s) 8, 513, 594, 1225
FaeI CATG 4 cut(s) 429, 1007, 1027, 1485
FaqI GGGAC 2 cut(s) 285, 891
FatI CATG 4 cut(s) 425, 1003, 1023, 1481
FauI CCCGC 1 cut(s) 581
FblI GTMKAC 1 cut(s) 261
FokI GGATG 5 cut(s) 291, 993, 1466, 1508, 1523
FriOI GRGCYC 4 cut(s) 8, 513, 594, 1225
FspBI CTAG 4 cut(s) 122, 141, 276, 939
GlaI GCGC 1 cut(s) 735
HaeIII GGCC 1 cut(s) 1536
HapII CCGG 4 cut(s) 333, 737, 774, 1016
HhaI GCGC 1 cut(s) 736
Hin1II CATG 4 cut(s) 429, 1007, 1027, 1485
Hin6I GCGC 1 cut(s) 734
HinP1I GCGC 1 cut(s) 734
HincII GTYRAC 3 cut(s) 262, 469, 1165
HindII GTYRAC 3 cut(s) 262, 469, 1165
HinfI GANTC 4 cut(s) 414, 465, 901, 1070
HpaII CCGG 4 cut(s) 333, 737, 774, 1016
HphI GGTGA 1 cut(s) 668
Hpy166II GTNNAC 4 cut(s) 262, 469, 634, 1165
Hpy188I TCNGA 7 cut(s) 16, 201, 244, 413, 1269, 1280, 1566
Hpy8I GTNNAC 4 cut(s) 262, 469, 634, 1165
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 5 cut(s) 239, 261, 418, 1435, 1462
HpyCH4III ACNGT 4 cut(s) 524, 582, 1135, 1525
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 5 cut(s) 768, 1181, 1235, 1349, 1615
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 137, 720, 830
HpyF3I CTNAG 6 cut(s) 455, 781, 918, 956, 1068, 1335
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 4 cut(s) 429, 1007, 1027, 1485
HspAI GCGC 1 cut(s) 734
KpnI GGTACC 1 cut(s) 729
Kzo9I GATC 8 cut(s) 322, 556, 658, 882, 959, 1042, 1243, 1275
LguI GCTCTTC 1 cut(s) 940
LmnI GCTCC 2 cut(s) 248, 1094
Lsp1109I GCAGC 8 cut(s) 76, 105, 118, 124, 217, 263, 820, 1247
LweI GCATC 3 cut(s) 288, 313, 1501
MaeI CTAG 4 cut(s) 122, 141, 276, 939
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 7 cut(s) 50, 538, 676, 761, 776, 898, 1517
MalI GATC 8 cut(s) 324, 558, 660, 884, 961, 1044, 1245, 1277
MboI GATC 8 cut(s) 322, 556, 658, 882, 959, 1042, 1243, 1275
MboII GAAGA 3 cut(s) 383, 400, 957
MhlI GDGCHC 4 cut(s) 8, 513, 594, 1225
MluCI AATT 7 cut(s) 380, 393, 485, 1055, 1111, 1374, 1396
MlyI GAGTC 3 cut(s) 474, 895, 1079
MmeI TCCRAC 3 cut(s) 381, 1154, 1179
Mph1103I ATGCAT 1 cut(s) 1351
MseI TTAA 4 cut(s) 183, 596, 708, 1449
MspA1I CMGCKG 4 cut(s) 230, 459, 833, 934
MspCI CTTAAG 1 cut(s) 595
MspI CCGG 4 cut(s) 333, 737, 774, 1016
MspR9I CCNGG 1 cut(s) 738
MwoI GCNNNNNNNGC 4 cut(s) 131, 137, 720, 830
NciI CCSGG 1 cut(s) 738
NdeII GATC 8 cut(s) 322, 556, 658, 882, 959, 1042, 1243, 1275
NheI GCTAGC 3 cut(s) 121, 140, 938
NlaIII CATG 4 cut(s) 429, 1007, 1027, 1485
NlaIV GGNNCC 3 cut(s) 273, 727, 1090
NmuCI GTSAC 3 cut(s) 538, 676, 898
NsiI ATGCAT 1 cut(s) 1351
NspV TTCGAA 1 cut(s) 1503
PaeR7I CTCGAG 1 cut(s) 7
PagI TCATGA 1 cut(s) 1023
PciSI GCTCTTC 1 cut(s) 940
PfeI GAWTC 1 cut(s) 414
PleI GAGTC 3 cut(s) 473, 895, 1078
PpsI GAGTC 3 cut(s) 473, 895, 1078
Ppu21I YACGTR 1 cut(s) 55
PpuMI RGGWCCY 1 cut(s) 272
PshBI ATTAAT 1 cut(s) 708
PsiI TTATAA 1 cut(s) 366
Psp124BI GAGCTC 2 cut(s) 8, 513
Psp5II RGGWCCY 1 cut(s) 272
PspN4I GGNNCC 3 cut(s) 273, 727, 1090
PspPI GGNCC 2 cut(s) 272, 429
PspPPI RGGWCCY 1 cut(s) 272
PspXI VCTCGAGB 1 cut(s) 7
PsrI GAACNNNNNNTAC 1 cut(s) 1589
PstNI CAGNNNCTG 4 cut(s) 788, 836, 1067, 1241
PvuII CAGCTG 3 cut(s) 230, 833, 934
RsaI GTAC 3 cut(s) 727, 1310, 1598
RsaNI GTAC 3 cut(s) 726, 1309, 1597
SacI GAGCTC 2 cut(s) 8, 513
SalI GTCGAC 1 cut(s) 260
SapI GCTCTTC 1 cut(s) 940
SaqAI TTAA 4 cut(s) 183, 596, 708, 1449
Sau3AI GATC 8 cut(s) 322, 556, 658, 882, 959, 1042, 1243, 1275
Sau96I GGNCC 2 cut(s) 272, 429
SchI GAGTC 3 cut(s) 474, 895, 1079
ScrFI CCNGG 1 cut(s) 738
SduI GDGCHC 4 cut(s) 8, 513, 594, 1225
SfaNI GCATC 3 cut(s) 288, 313, 1501
Sfr274I CTCGAG 1 cut(s) 7
SfuI TTCGAA 1 cut(s) 1503
SinI GGWCC 2 cut(s) 272, 429
SlaI CTCGAG 1 cut(s) 7
SmlI CTYRAG 3 cut(s) 7, 595, 1577
SmoI CTYRAG 3 cut(s) 7, 595, 1577
Sse9I AATT 7 cut(s) 380, 393, 485, 1055, 1111, 1374, 1396
SsiI CCGC 7 cut(s) 134, 459, 588, 723, 742, 803, 1019
SspMI CTAG 4 cut(s) 122, 141, 276, 939
SstI GAGCTC 2 cut(s) 8, 513
StyD4I CCNGG 1 cut(s) 736
TaaI ACNGT 4 cut(s) 524, 582, 1135, 1525
TaiI ACGT 1 cut(s) 57
TaqI TCGA 8 cut(s) 8, 261, 661, 966, 1045, 1073, 1095, 1503
TasI AATT 7 cut(s) 380, 393, 485, 1055, 1111, 1374, 1396
TatI WGTACW 1 cut(s) 1308
TauI GCSGC 2 cut(s) 137, 806
TfiI GAWTC 1 cut(s) 414
Tru1I TTAA 4 cut(s) 183, 596, 708, 1449
Tru9I TTAA 4 cut(s) 183, 596, 708, 1449
TscAI CASTG 3 cut(s) 163, 677, 911
TseFI GTSAC 3 cut(s) 538, 676, 898
TseI GCWGC 8 cut(s) 64, 118, 131, 137, 230, 251, 833, 1235
Tsp45I GTSAC 3 cut(s) 538, 676, 898
TspDTI ATGAA 6 cut(s) 401, 591, 698, 992, 1040, 1155
TspGWI ACGGA 4 cut(s) 279, 636, 711, 1368
TspRI CASTG 3 cut(s) 163, 677, 911
Vha464I CTTAAG 1 cut(s) 595
VpaK11BI GGWCC 2 cut(s) 272, 429
VspI ATTAAT 1 cut(s) 708
XapI RAATTY 2 cut(s) 485, 1055
XcmI CCANNNNNNNNNTGG 1 cut(s) 315
XhoI CTCGAG 1 cut(s) 7
XmiI GTMKAC 1 cut(s) 261
XspI CTAG 4 cut(s) 122, 141, 276, 939
Zsp2I ATGCAT 1 cut(s) 1351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.