Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003709

Physical Location & Seq

Genomic Coordinates Forward (+)

330124 .. 333328

Gene Structure 3205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g00340.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTTCAATGTATTTGAGCGGCCGAAGAGAACGAGTTGTAGAAACATGTTGGGTGGTAAAGGAGGACGTCTTCTTTTTTGCTTCATCCTCGTGCTTTTTGCTTTGTTAGCAAGTGCTGCTGTGGAAGTTGAACCGAGTCATTATTCGAGGCCATTTAATCGAACTAGCTTCCCACCTGGGTTCATCTTTGGAGCCGGTTTAGCTGCTTATCAGTCTGAAGGAGCAGCTCTTGTTCACGGAAAGGGACCAAGTATATGGGATACCTTCACTAGGGAACATCCAGAAAAAATTTCGGATGGTAGCAATGGGAATGCAGCCAATGATTTTTACAATCACTATAAGGAGGACATAAAATTGATAAAAAAGATCGGCTTGGACTCCTTCAGATTTTCTTTCTCATGGTCAAGAATACTACCTAAGGGTACAATTAAAGGTGGAGTGAACCAAGAAGGAGTCAACTTCTACAACAATCTGATAGATGAGCTCTTATCCAATGGAATTGTGCCTTTTGTGACCCTTTTCCATTGGGATACACCACAAGCACTTGAAGATGAGTACGGTGGATTTTTAAGCCCTAAGATTGTGAATGATTTTCAAGATTATGCCAATTTTTGTTTCAAAACATTTGGGGATCGTGTTAAGCATTGGGTGACATTGAACGAGCCAATTACATATTGTGTTAATGGATACAATGGCGGTACTTATGCACCCGGTCGATGTTCAAACTATGTCGGAAATTGCACTGCTGGTAACTCTGCCACTGAGCCTTACATTGTTGGTCATCATCTACTACTTGCTCATGCACACGCTGTGAAGATATACAGGCACAAGTATCAGAACACTGTGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

284

Amino Acids

31.66

Weight (kDa)

8.15

Isoelectric Point (pI)

28.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44480 AT2G44480 AT2G44480 AT2G44480 AT2G44480
fragaria_vesca	FvH4_7g00214 FvH4_7g00214 FvH4_7g00214 FvH4_7g00214 FvH4_7g00250 FvH4_7g00270
malus_domestica	MD07G1003400.v1.1
prunus_persica	Prupe.2G005100_v2.0.a1
pyrus_communis	pycom07g00340
rosa_chinensis	RchiOBHm_Chr1g0313661 RchiOBHm_Chr1g0313711 RchiOBHm_Chr1g0313741
rosa_laevigata	RLG00000030780 RLG00000030783 RLG00000030785
rosa_multiflora	Rmu_sc0009740.1_g000006 Rmu_ssc0000027.1_g000024
rosa_roxburghii	Rroxscaffold_4G00332110 Rroxscaffold_4G00332130
rosa_rugosa	RorugPtG0005800 RorugPtG0005900.1 RorugPtG0006000.1
rosa_samantha	Rh1AG005800 Rh1CG008900 Rh1CG009000 Rh1DG004000 Rh1DG004200
rosa_wichuraiana	Rw1G000340 Rw1G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	70
AccBSI	CCGCTC	1 cut(s)	19
AciI	CCGC	2 cut(s)	19, 696
AclWI	GGATC	1 cut(s)	639
AcoI	YGGCCR	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	288
AcuI	CTGAAG	2 cut(s)	237, 367
AcyI	GRCGYC	1 cut(s)	67
AdeI	CACNNNGTG	1 cut(s)	811
AfaI	GTAC	3 cut(s)	424, 557, 700
AfiI	CCNNNNNNNGG	1 cut(s)	270
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	7 cut(s)	7, 131, 548, 596, 619, 658, 723
AjnI	CCWGG	1 cut(s)	175
AjuI	GAANNNNNNNTTGG	2 cut(s)	599, 631
AluBI	AGCT	4 cut(s)	168, 203, 227, 484
AluI	AGCT	4 cut(s)	168, 203, 227, 484
Alw21I	GWGCWC	1 cut(s)	486
AlwI	GGATC	1 cut(s)	639
AoxI	GGCC	2 cut(s)	20, 149
ApeKI	GCWGC	4 cut(s)	116, 203, 224, 314
ApoI	RAATTY	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	245
AsuC2I	CCSGG	1 cut(s)	711
AsuHPI	GGTGA	1 cut(s)	661
AvaII	GGWCC	1 cut(s)	245
AxyI	CCTNAGG	1 cut(s)	417
BanII	GRGCYC	1 cut(s)	486
BauI	CACGAG	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	4 cut(s)	103, 190, 236, 326
BccI	CCATC	1 cut(s)	290
BciT130I	CCWGG	1 cut(s)	177
BciVI	GTATCC	3 cut(s)	253, 523, 680
BcnI	CCSGG	1 cut(s)	711
BfaI	CTAG	2 cut(s)	165, 270
BfuI	GTATCC	3 cut(s)	253, 523, 680
BisI	GCNGC	5 cut(s)	20, 117, 204, 225, 315
BlsI	GCNGC	5 cut(s)	21, 118, 205, 226, 316
Bme1390I	CCNGG	2 cut(s)	177, 711
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	2 cut(s)	193, 246
BmrFI	CCNGG	2 cut(s)	177, 711
BpiI	GAAGAC	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	711
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
Bse118I	RCCGGY	1 cut(s)	194
Bse21I	CCTNAGG	1 cut(s)	417
Bse3DI	GCAATG	1 cut(s)	310
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	176
BseGI	GGATG	3 cut(s)	84, 277, 301
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	753
BseX3I	CGGCCG	1 cut(s)	20
BseXI	GCAGC	4 cut(s)	103, 190, 236, 326
Bsh1285I	CGRYCG	2 cut(s)	23, 715
BshFI	GGCC	2 cut(s)	22, 151
BsiEI	CGRYCG	2 cut(s)	23, 715
BsiHKAI	GWGCWC	1 cut(s)	486
BsiSI	CCGG	2 cut(s)	195, 711
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	258
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	22, 151
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp143I	GATC	2 cut(s)	366, 631
BspACI	CCGC	2 cut(s)	19, 696
BspANI	GGCC	2 cut(s)	22, 151
BspCNI	CTCAG	1 cut(s)	754
BspLI	GGNNCC	2 cut(s)	193, 246
BspPI	GGATC	1 cut(s)	639
BsrBI	CCGCTC	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	310
BsrFI	RCCGGY	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	176
BssMI	GATC	2 cut(s)	366, 631
BssNI	GRCGYC	1 cut(s)	67
BssSI	CACGAG	1 cut(s)	89
Bst2BI	CACGAG	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	560, 844
Bst6I	CTCTTC	1 cut(s)	20
BstACI	GRCGYC	1 cut(s)	67
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstDEI	CTNAG	3 cut(s)	417, 576, 762
BstENI	CCTNNNNNAGG	1 cut(s)	268
BstF5I	GGATG	3 cut(s)	84, 277, 301
BstKTI	GATC	2 cut(s)	369, 634
BstMBI	GATC	2 cut(s)	366, 631
BstMCI	CGRYCG	2 cut(s)	23, 715
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 116, 200
BstNI	CCWGG	1 cut(s)	177
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	2 cut(s)	175, 709
BstV1I	GCAGC	4 cut(s)	103, 190, 236, 326
BstV2I	GAAGAC	1 cut(s)	62
BstXI	CCANNNNNNTGG	1 cut(s)	255
BstZI	CGGCCG	1 cut(s)	20
Bsu36I	CCTNAGG	1 cut(s)	417
BsuI	GTATCC	3 cut(s)	253, 523, 680
BsuRI	GGCC	2 cut(s)	22, 151
BtsCI	GGATG	3 cut(s)	84, 277, 301
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	3 cut(s)	741, 759, 840
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	245
Csp6I	GTAC	3 cut(s)	423, 556, 699
CviAII	CATG	3 cut(s)	46, 399, 800
CviQI	GTAC	3 cut(s)	423, 556, 699
DdeI	CTNAG	3 cut(s)	417, 576, 762
DpnI	GATC	2 cut(s)	368, 633
DpnII	GATC	2 cut(s)	366, 631
DraIII	CACNNNGTG	1 cut(s)	811
EaeI	YGGCCR	1 cut(s)	20
EagI	CGGCCG	1 cut(s)	20
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	484
EclXI	CGGCCG	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	245
Eco52I	CGGCCG	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	484
Eco57I	CTGAAG	2 cut(s)	237, 367
Eco81I	CCTNAGG	1 cut(s)	417
EcoICRI	GAGCTC	1 cut(s)	484
EcoNI	CCTNNNNNAGG	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	486
FaeI	CATG	3 cut(s)	49, 402, 803
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	3 cut(s)	45, 398, 799
Fnu4HI	GCNGC	5 cut(s)	20, 117, 204, 225, 315
FokI	GGATG	3 cut(s)	71, 264, 308
FriOI	GRGCYC	1 cut(s)	486
Fsp4HI	GCNGC	5 cut(s)	20, 117, 204, 225, 315
FspBI	CTAG	2 cut(s)	165, 270
GluI	GCNGC	5 cut(s)	20, 117, 204, 225, 315
HaeIII	GGCC	2 cut(s)	22, 151
HapII	CCGG	2 cut(s)	195, 711
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	3 cut(s)	49, 402, 803
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	3 cut(s)	136, 377, 453
HpaII	CCGG	2 cut(s)	195, 711
HphI	GGTGA	1 cut(s)	661
Hpy166II	GTNNAC	3 cut(s)	235, 442, 457
Hpy188I	TCNGA	6 cut(s)	217, 295, 386, 474, 734, 837
Hpy188III	TCNNGA	3 cut(s)	281, 405, 596
Hpy8I	GTNNAC	3 cut(s)	235, 442, 457
HpyAV	CCTTC	4 cut(s)	212, 274, 391, 443
HpyCH4III	ACNGT	2 cut(s)	560, 844
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	4 cut(s)	314, 707, 741, 803
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 116, 200
HpyF3I	CTNAG	3 cut(s)	417, 576, 762
HpySE526I	ACGT	1 cut(s)	67
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	3 cut(s)	49, 402, 803
Kzo9I	GATC	2 cut(s)	366, 631
LmnI	GCTCC	2 cut(s)	191, 221
LpnPI	CCDG	7 cut(s)	162, 189, 208, 294, 724, 732, 808
Lsp1109I	GCAGC	4 cut(s)	103, 190, 236, 326
MaeI	CTAG	2 cut(s)	165, 270
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	3 cut(s)	511, 649, 749
MalI	GATC	2 cut(s)	368, 633
MbiI	CCGCTC	1 cut(s)	19
MboI	GATC	2 cut(s)	366, 631
MboII	GAAGA	4 cut(s)	37, 62, 560, 826
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	7 cut(s)	288, 353, 426, 498, 607, 666, 736
MlyI	GAGTC	3 cut(s)	145, 371, 462
MmeI	TCCRAC	1 cut(s)	712
MnlI	CCTC	4 cut(s)	56, 98, 141, 337
MseI	TTAA	5 cut(s)	156, 429, 569, 639, 681
MslI	CAYNNNNRTG	1 cut(s)	89
MspI	CCGG	2 cut(s)	195, 711
MspR9I	CCNGG	2 cut(s)	177, 711
Mva1269I	GAATGC	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	3 cut(s)	107, 116, 200
NciI	CCSGG	1 cut(s)	711
NdeII	GATC	2 cut(s)	366, 631
NlaIII	CATG	3 cut(s)	49, 402, 803
NlaIV	GGNNCC	2 cut(s)	193, 246
NmuCI	GTSAC	2 cut(s)	511, 649
NspI	RCATGY	1 cut(s)	49
PciI	ACATGT	1 cut(s)	45
PctI	GAATGC	1 cut(s)	316
PkrI	GCNGC	5 cut(s)	21, 118, 205, 226, 316
PleI	GAGTC	3 cut(s)	144, 371, 461
PpsI	GAGTC	3 cut(s)	144, 371, 461
PscI	ACATGT	1 cut(s)	45
Psp124BI	GAGCTC	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	2 cut(s)	193, 246
PspPI	GGNCC	1 cut(s)	245
RsaI	GTAC	3 cut(s)	424, 557, 700
RsaNI	GTAC	3 cut(s)	423, 556, 699
RseI	CAYNNNNRTG	1 cut(s)	89
SacI	GAGCTC	1 cut(s)	486
SaqAI	TTAA	5 cut(s)	156, 429, 569, 639, 681
SatI	GCNGC	5 cut(s)	20, 117, 204, 225, 315
Sau3AI	GATC	2 cut(s)	366, 631
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	3 cut(s)	145, 371, 462
ScrFI	CCNGG	2 cut(s)	177, 711
SduI	GDGCHC	1 cut(s)	486
SetI	ASST	9 cut(s)	70, 170, 178, 205, 229, 266, 418, 436, 486
SinI	GGWCC	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	89
Sse9I	AATT	7 cut(s)	288, 353, 426, 498, 607, 666, 736
SsiI	CCGC	2 cut(s)	19, 696
SspMI	CTAG	2 cut(s)	165, 270
SstI	GAGCTC	1 cut(s)	486
StyD4I	CCNGG	2 cut(s)	175, 709
TaaI	ACNGT	2 cut(s)	560, 844
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	3 cut(s)	146, 160, 715
TasI	AATT	7 cut(s)	288, 353, 426, 498, 607, 666, 736
TauI	GCSGC	1 cut(s)	22
Tru1I	TTAA	5 cut(s)	156, 429, 569, 639, 681
Tru9I	TTAA	5 cut(s)	156, 429, 569, 639, 681
TscAI	CASTG	3 cut(s)	748, 766, 847
TseFI	GTSAC	2 cut(s)	511, 649
TseI	GCWGC	4 cut(s)	116, 203, 224, 314
Tsp45I	GTSAC	2 cut(s)	511, 649
TspDTI	ATGAA	2 cut(s)	73, 172
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	3 cut(s)	748, 766, 847
VpaK11BI	GGWCC	1 cut(s)	245
XagI	CCTNNNNNAGG	1 cut(s)	268
XapI	RAATTY	1 cut(s)	288
XceI	RCATGY	1 cut(s)	49
XspI	CTAG	2 cut(s)	165, 270
ZraI	GACGTC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.