FvH4_7g00270

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003709
Physical Location & Seq
Forward (+)
857120 .. 861873
4754 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00270.t1

Sequence Viewer

Length: 1527 bp
ATGGCGTTTGGAGGTTCTGTGTTCTTTTCTATGCTGCTAGCTTTGGCTGCGGCTGCTAGTTTCTCCTTTGGCACTGCCCGTGCTTACTATATCCCTTTTAACCGAAGCAGTTTTCCGACTGATTTCCTTTTTGGTGCTGGTTCAGCTGCTTATCAGTCAGAAGGAGCAGCATTAGTCGACGGAAGGGGACCTAGCATCTGGGATACTTTTGTTAGAAAGCATCCAGAAAAGATAAGGGATCACAGCACCGGAGATGTAGCGAATGACTTTTATCATCGTTATAAGGAAGATATCAAATTGATGAAGAAAATTGGGTTGGACACCTTCAGATTCTCAATCTCATGGTCCAGATTACTTCCAAAGGGAAAACTCAGCGGAGGAGTCAACTCACTCGGTGTCAAATTTTACAACAATCTCATCAATGAGCTCGTATCAAACGGTATCAAGCCCTTTGTGACTTTACTCCATTTTGATCCTCCCCAAGCACTTGATGAACTGTATGGCGGGCTCTTAAGCCGTAACATAATCAACGATTACGGAGATTATGTGGATTTTTGTTTCAAGACATTTGGTGATCGAGTAAAGCATTGGATCACGATGAACGAACCTAACGGAATTGCTATTAACGGCTACAACGGCGGTACCATTGCGCCAGGGCGGTGTTCTAACTACGAGGGAAACTGCACTTCCGGTAACTCAGCGACTGAACCCTACATTGCGGCACACCATTTGCTTCTTGCTCATTCAGCTGCTGTCAAGATATACAAGGACAAATATCAAGCTACCCAAAAGGGACAGATCGGGATTACCATAATAACTCTCTGGTGCAAACCTAAGTTCCCAGAACAGCTGGCTAGCCGGAGAGCCACTCTTAGATCACTCGACTTTATGTTTGCCAATCCTATATTTCATGGGGATTATCCGGCGGTCATGAAATCTTTGGTCGGGGATCGATTGCCGAAATTTACAGAAGCTGAGTCGAAGCAGATAAAAGGCTCCCTCGATTTTCTTGGGTTGAATTACTACACAGCATATTACACAGTTGATGAACCAGCTTTATCCAACGCTGTCAACCATAGTTGGAGTGCAGACAGACAAGTCGGTGCTTCTACTACTGATAAAAATGGGGCTCTTATTGGTGCAGCGACTGATCTGGATTGGCTTTTCGTTTATCCGAAAGGGATCAGAGATGTTCTTTTGTATATAAAGGAGAAGTACAATAATCCAAACATTTATATTACTGAGAATGGATATCCATACGGATATAATGCCTCAACACCAATTCAAGAAGCTCGTAAGGATAATTTGAGGATAAGATACCATCACGACCATTTGTGGTATCTTTTGAAGGCTATTAAGAATGGAGTTAAAGTGAAGGGATACTACGCATGGTCGTTTTGGGATGACTTCGAATGGGATACTGGTTACACAGTTGGGTTTGGCCTGACATTAGTTGATGTCAAGGATAATCTGAAAAGATACCTCAAGTATTCTGCCTATTGGTACAAGATGTTCCTCCTGCACTGA

Protein Analysis

509

Amino Acids

57.39

Weight (kDa)

8.91

Isoelectric Point (pI)

19.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 36 - 504 7.6e-146 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 282
AasI GACNNNNNNGTC 1 cut(s) 1097
Acc65I GGTACC 1 cut(s) 641
AccB1I GGYRCC 1 cut(s) 641
AccI GTMKAC 1 cut(s) 177
AciI CCGC 7 cut(s) 50, 375, 504, 639, 658, 719, 926
AclWI GGATC 5 cut(s) 246, 467, 599, 957, 1190
AcsI RAATTY 2 cut(s) 401, 962
AcuI CTGAAG 1 cut(s) 310
AdeI CACNNNGTG 1 cut(s) 395
AfaI GTAC 3 cut(s) 643, 1217, 1505
AflII CTTAAG 1 cut(s) 511
AgsI TTSAA 4 cut(s) 562, 1018, 1286, 1348
AjnI CCWGG 1 cut(s) 652
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AluBI AGCT 9 cut(s) 41, 146, 427, 749, 782, 850, 974, 1055, 1292
AluI AGCT 9 cut(s) 41, 146, 427, 749, 782, 850, 974, 1055, 1292
Alw21I GWGCWC 1 cut(s) 429
AlwI GGATC 5 cut(s) 246, 467, 599, 957, 1190
AlwNI CAGNNNCTG 4 cut(s) 704, 752, 974, 1148
AoxI GGCC 1 cut(s) 1441
ApeKI GCWGC 7 cut(s) 34, 47, 53, 146, 167, 749, 1142
ApoI RAATTY 2 cut(s) 401, 962
ArsI GACNNNNNNTTYG 2 cut(s) 875, 907
Asp718I GGTACC 1 cut(s) 641
AspLEI GCGC 1 cut(s) 652
AspS9I GGNCC 2 cut(s) 188, 345
AsuHPI GGTGA 1 cut(s) 584
AsuII TTCGAA 1 cut(s) 1410
AsuNHI GCTAGC 2 cut(s) 37, 854
AvaII GGWCC 2 cut(s) 188, 345
BaeI ACNNNNGTAYC 4 cut(s) 195, 228, 625, 658
BanI GGYRCC 1 cut(s) 641
BanII GRGCYC 3 cut(s) 429, 510, 1132
BarI GAAGNNNNNNTAC 2 cut(s) 1367, 1399
Bbv12I GWGCWC 1 cut(s) 429
BbvI GCAGC 7 cut(s) 21, 34, 40, 133, 179, 736, 1154
BccI CCATC 1 cut(s) 1329
BceAI ACGGC 3 cut(s) 501, 643, 652
BciT130I CCWGG 1 cut(s) 654
BciVI GTATCC 3 cut(s) 196, 1373, 1411
BfaI CTAG 4 cut(s) 38, 57, 192, 855
BfrI CTTAAG 1 cut(s) 511
BfuI GTATCC 3 cut(s) 196, 1373, 1411
BisI GCNGC 9 cut(s) 35, 48, 51, 54, 147, 168, 720, 750, 1143
BlsI GCNGC 9 cut(s) 36, 49, 52, 55, 148, 169, 721, 751, 1144
Bme1390I CCNGG 1 cut(s) 654
Bme18I GGWCC 2 cut(s) 188, 345
BmgT120I GGNCC 2 cut(s) 188, 345
BmiI GGNNCC 3 cut(s) 189, 643, 997
BmrFI CCNGG 1 cut(s) 654
BmsI GCATC 2 cut(s) 204, 229
BmtI GCTAGC 2 cut(s) 41, 858
BplI GAGNNNNNCTC 2 cut(s) 853, 885
Bpu14I TTCGAA 1 cut(s) 1410
BpuEI CTTGAG 1 cut(s) 1469
Bsa29I ATCGAT 1 cut(s) 952
BsaJI CCNNGG 1 cut(s) 653
BsaWI WCCGGW 2 cut(s) 248, 689
BsaXI ACNNNNNCTCC 5 cut(s) 33, 531, 561, 1356, 1386
Bse1I ACTGG 1 cut(s) 1426
Bse3DI GCAATG 2 cut(s) 645, 714
BseBI CCWGG 1 cut(s) 654
BseCI ATCGAT 1 cut(s) 952
BseDI CCNNGG 1 cut(s) 653
BseGI GGATG 2 cut(s) 220, 1408
BseMI GCAATG 2 cut(s) 645, 714
BseMII CTCAG 4 cut(s) 385, 711, 966, 1233
BseNI ACTGG 1 cut(s) 1426
BseRI GAGGAG 1 cut(s) 393
BseXI GCAGC 7 cut(s) 21, 34, 40, 133, 179, 736, 1154
BsgI GTGCAG 4 cut(s) 667, 1107, 1161, 1505
BshFI GGCC 1 cut(s) 1443
BshNI GGYRCC 1 cut(s) 641
BshVI ATCGAT 1 cut(s) 952
BsiHKAI GWGCWC 1 cut(s) 429
BsiSI CCGG 4 cut(s) 249, 690, 859, 923
BslFI GGGAC 2 cut(s) 201, 807
BsmFI GGGAC 2 cut(s) 201, 807
BsnI GGCC 1 cut(s) 1443
Bsp119I TTCGAA 1 cut(s) 1410
Bsp1286I GDGCHC 3 cut(s) 429, 510, 1132
Bsp143I GATC 9 cut(s) 238, 472, 574, 591, 798, 875, 949, 1150, 1182
BspACI CCGC 7 cut(s) 50, 375, 504, 639, 658, 719, 926
BspANI GGCC 1 cut(s) 1443
BspCNI CTCAG 4 cut(s) 384, 710, 967, 1234
BspDI ATCGAT 1 cut(s) 952
BspHI TCATGA 1 cut(s) 930
BspLI GGNNCC 3 cut(s) 189, 643, 997
BspOI GCTAGC 2 cut(s) 41, 858
BspPI GGATC 5 cut(s) 246, 467, 599, 957, 1190
BspT104I TTCGAA 1 cut(s) 1410
BspT107I GGYRCC 1 cut(s) 641
BspTI CTTAAG 1 cut(s) 511
BsrDI GCAATG 2 cut(s) 645, 714
BsrI ACTGG 1 cut(s) 1426
BssECI CCNNGG 1 cut(s) 653
BssMI GATC 9 cut(s) 238, 472, 574, 591, 798, 875, 949, 1150, 1182
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 4 cut(s) 440, 498, 1042, 1432
BstAFI CTTAAG 1 cut(s) 511
BstBI TTCGAA 1 cut(s) 1410
BstC8I GCNNGC 4 cut(s) 39, 506, 852, 856
BstDEI CTNAG 6 cut(s) 371, 697, 834, 872, 975, 1242
BstF5I GGATG 2 cut(s) 220, 1408
BstHHI GCGC 1 cut(s) 652
BstKTI GATC 9 cut(s) 241, 475, 577, 594, 801, 878, 952, 1153, 1185
BstMBI GATC 9 cut(s) 238, 472, 574, 591, 798, 875, 949, 1150, 1182
BstMWI GCNNNNNNNGC 5 cut(s) 47, 53, 143, 636, 746
BstNI CCWGG 1 cut(s) 654
BstSCI CCNGG 1 cut(s) 652
BstV1I GCAGC 7 cut(s) 21, 34, 40, 133, 179, 736, 1154
Bsu15I ATCGAT 1 cut(s) 952
BsuI GTATCC 3 cut(s) 196, 1373, 1411
BsuRI GGCC 1 cut(s) 1443
BsuTUI ATCGAT 1 cut(s) 952
BtsCI GGATG 2 cut(s) 220, 1408
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 72, 1522
Cac8I GCNNGC 4 cut(s) 39, 506, 852, 856
CaiI CAGNNNCTG 4 cut(s) 704, 752, 974, 1148
CciI TCATGA 1 cut(s) 930
CfoI GCGC 1 cut(s) 652
Cfr13I GGNCC 2 cut(s) 188, 345
ClaI ATCGAT 1 cut(s) 952
Csp6I GTAC 3 cut(s) 642, 1216, 1504
CviAII CATG 4 cut(s) 342, 911, 931, 1389
CviQI GTAC 3 cut(s) 642, 1216, 1504
DdeI CTNAG 6 cut(s) 371, 697, 834, 872, 975, 1242
DpnI GATC 9 cut(s) 240, 474, 576, 593, 800, 877, 951, 1152, 1184
DpnII GATC 9 cut(s) 238, 472, 574, 591, 798, 875, 949, 1150, 1182
DraIII CACNNNGTG 1 cut(s) 395
DrdI GACNNNNNNGTC 1 cut(s) 1097
DseDI GACNNNNNNGTC 1 cut(s) 1097
Ecl136II GAGCTC 1 cut(s) 427
Eco24I GRGCYC 3 cut(s) 429, 510, 1132
Eco32I GATATC 2 cut(s) 292, 1253
Eco47I GGWCC 2 cut(s) 188, 345
Eco53kI GAGCTC 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 310
EcoICRI GAGCTC 1 cut(s) 427
EcoO109I RGGNCCY 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 652
EcoRV GATATC 2 cut(s) 292, 1253
EcoT38I GRGCYC 3 cut(s) 429, 510, 1132
FaeI CATG 4 cut(s) 345, 914, 934, 1392
FaqI GGGAC 2 cut(s) 201, 807
FatI CATG 4 cut(s) 341, 910, 930, 1388
FauI CCCGC 1 cut(s) 497
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 9 cut(s) 35, 48, 51, 54, 147, 168, 720, 750, 1143
FokI GGATG 2 cut(s) 207, 1415
FriOI GRGCYC 3 cut(s) 429, 510, 1132
Fsp4HI GCNGC 9 cut(s) 35, 48, 51, 54, 147, 168, 720, 750, 1143
FspBI CTAG 4 cut(s) 38, 57, 192, 855
GlaI GCGC 1 cut(s) 651
GluI GCNGC 9 cut(s) 35, 48, 51, 54, 147, 168, 720, 750, 1143
HaeIII GGCC 1 cut(s) 1443
HapII CCGG 4 cut(s) 249, 690, 859, 923
HhaI GCGC 1 cut(s) 652
Hin1II CATG 4 cut(s) 345, 914, 934, 1392
Hin6I GCGC 1 cut(s) 650
HinP1I GCGC 1 cut(s) 650
HincII GTYRAC 3 cut(s) 178, 385, 1072
HindII GTYRAC 3 cut(s) 178, 385, 1072
HinfI GANTC 3 cut(s) 330, 381, 977
HpaII CCGG 4 cut(s) 249, 690, 859, 923
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 3 cut(s) 178, 385, 1072
Hpy188I TCNGA 6 cut(s) 117, 160, 329, 1176, 1187, 1473
Hpy8I GTNNAC 3 cut(s) 178, 385, 1072
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 5 cut(s) 155, 177, 334, 1342, 1369
HpyCH4III ACNGT 4 cut(s) 440, 498, 1042, 1432
HpyCH4V TGCA 5 cut(s) 684, 828, 1088, 1142, 1522
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 53, 143, 636, 746
HpyF3I CTNAG 6 cut(s) 371, 697, 834, 872, 975, 1242
Hsp92II CATG 4 cut(s) 345, 914, 934, 1392
HspAI GCGC 1 cut(s) 650
KpnI GGTACC 1 cut(s) 645
Kzo9I GATC 9 cut(s) 238, 472, 574, 591, 798, 875, 949, 1150, 1182
LmnI GCTCC 2 cut(s) 164, 1001
Lsp1109I GCAGC 7 cut(s) 21, 34, 40, 133, 179, 736, 1154
LweI GCATC 2 cut(s) 204, 229
MaeI CTAG 4 cut(s) 38, 57, 192, 855
MaeIII GTNAC 4 cut(s) 454, 518, 692, 1424
MalI GATC 9 cut(s) 240, 474, 576, 593, 800, 877, 951, 1152, 1184
MboI GATC 9 cut(s) 238, 472, 574, 591, 798, 875, 949, 1150, 1182
MboII GAAGA 2 cut(s) 299, 316
MhlI GDGCHC 3 cut(s) 429, 510, 1132
MluCI AATT 8 cut(s) 296, 309, 401, 615, 962, 1018, 1281, 1303
MlyI GAGTC 2 cut(s) 390, 986
MmeI TCCRAC 4 cut(s) 140, 297, 1061, 1086
MnlI CCTC 9 cut(s) 5, 371, 486, 667, 1010, 1282, 1302, 1493, 1526
MseI TTAA 5 cut(s) 99, 512, 624, 1356, 1368
MspA1I CMGCKG 4 cut(s) 146, 375, 749, 850
MspCI CTTAAG 1 cut(s) 511
MspI CCGG 4 cut(s) 249, 690, 859, 923
MspR9I CCNGG 1 cut(s) 654
MvaI CCWGG 1 cut(s) 654
MwoI GCNNNNNNNGC 5 cut(s) 47, 53, 143, 636, 746
NdeII GATC 9 cut(s) 238, 472, 574, 591, 798, 875, 949, 1150, 1182
NheI GCTAGC 2 cut(s) 37, 854
NlaIII CATG 4 cut(s) 345, 914, 934, 1392
NlaIV GGNNCC 3 cut(s) 189, 643, 997
NmuCI GTSAC 1 cut(s) 454
NspV TTCGAA 1 cut(s) 1410
PagI TCATGA 1 cut(s) 930
PfeI GAWTC 1 cut(s) 330
PkrI GCNGC 9 cut(s) 36, 49, 52, 55, 148, 169, 721, 751, 1144
PleI GAGTC 2 cut(s) 389, 985
PpsI GAGTC 2 cut(s) 389, 985
PpuMI RGGWCCY 1 cut(s) 188
PsiI TTATAA 1 cut(s) 282
Psp124BI GAGCTC 1 cut(s) 429
Psp5II RGGWCCY 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 652
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 3 cut(s) 189, 643, 997
PspPI GGNCC 2 cut(s) 188, 345
PspPPI RGGWCCY 1 cut(s) 188
PsrI GAACNNNNNNTAC 1 cut(s) 1496
PstNI CAGNNNCTG 4 cut(s) 704, 752, 974, 1148
PvuII CAGCTG 3 cut(s) 146, 749, 850
RsaI GTAC 3 cut(s) 643, 1217, 1505
RsaNI GTAC 3 cut(s) 642, 1216, 1504
SacI GAGCTC 1 cut(s) 429
SalI GTCGAC 1 cut(s) 176
SaqAI TTAA 5 cut(s) 99, 512, 624, 1356, 1368
SatI GCNGC 9 cut(s) 35, 48, 51, 54, 147, 168, 720, 750, 1143
Sau3AI GATC 9 cut(s) 238, 472, 574, 591, 798, 875, 949, 1150, 1182
Sau96I GGNCC 2 cut(s) 188, 345
SchI GAGTC 2 cut(s) 390, 986
ScrFI CCNGG 1 cut(s) 654
SduI GDGCHC 3 cut(s) 429, 510, 1132
SfaNI GCATC 2 cut(s) 204, 229
SfuI TTCGAA 1 cut(s) 1410
SinI GGWCC 2 cut(s) 188, 345
SmlI CTYRAG 2 cut(s) 511, 1484
SmoI CTYRAG 2 cut(s) 511, 1484
Sse9I AATT 8 cut(s) 296, 309, 401, 615, 962, 1018, 1281, 1303
SsiI CCGC 7 cut(s) 50, 375, 504, 639, 658, 719, 926
SspMI CTAG 4 cut(s) 38, 57, 192, 855
SstI GAGCTC 1 cut(s) 429
StyD4I CCNGG 1 cut(s) 652
TaaI ACNGT 4 cut(s) 440, 498, 1042, 1432
TaqI TCGA 7 cut(s) 177, 577, 882, 952, 980, 1002, 1410
TasI AATT 8 cut(s) 296, 309, 401, 615, 962, 1018, 1281, 1303
TatI WGTACW 1 cut(s) 1215
TauI GCSGC 2 cut(s) 53, 722
TfiI GAWTC 1 cut(s) 330
Tru1I TTAA 5 cut(s) 99, 512, 624, 1356, 1368
Tru9I TTAA 5 cut(s) 99, 512, 624, 1356, 1368
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 7 cut(s) 34, 47, 53, 146, 167, 749, 1142
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 6 cut(s) 317, 507, 614, 899, 947, 1062
TspGWI ACGGA 4 cut(s) 195, 552, 627, 1275
TspRI CASTG 1 cut(s) 79
Vha464I CTTAAG 1 cut(s) 511
VpaK11BI GGWCC 2 cut(s) 188, 345
XapI RAATTY 2 cut(s) 401, 962
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 4 cut(s) 38, 57, 192, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.