Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003709

Physical Location & Seq

Genomic Coordinates Forward (+)

1298431 .. 1300649

Gene Structure 2219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG008900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTCCCTGTCGGCGTCGAGATGTCCGGAGTCAGAGGAGCTGATGGAGTCTGGGTCAAATCTGGTGTATGGTGGTGATTTTCAAGATTATGCCGATTTTTGTTTCAAAACATTTGGTGACCGAGTTAAGCATTGGATCACTCTGAACGAGCCAGTTACATTCTGTGTCAACGGGTACAATGGTGGAACCAATGCACCTGGTCGATGCTCTAACTATGTCGGAAATTGCACCGCCGGTAACTCTGCCAGAGAGCCTTACATTGTAGGCCATCATCTGCTGCTTGCTCACGCGCACTCTGCAAATTTATACAAGAAGAAGTATCAGGCTTCTCAAAAAGGGCAAATCGGGATTTCGGTTGTGACATACTGGTATTTAGCAAAATCGGAAACTGCTGCAAGCAAGAGGGCAGCTTCTAGGTCTCTTGATTTTGTTTTTGGATGGTTTGCTCATCCCGTTACATTCGCTGAGAAAAATGGGGTTCCTTTGGGTTCAGCGCTAGATCTGAGCTGGCTTTACATCTATCCAAAGGGAATTCGAGAGCTTATGCTATACATAAAAGAAAAGTACAATGATCCCGAGATTTACATTACTGAAAATGGTGTTGGTGAGGCAAATAATAGCTCCCAGCCCCTCAACGATGCCCTCAAGGACAGTACAAGGATAAGATACCATTCTCTCCATCTTTCATATCTTTTGAAGTCCATCAAGGAGGGGGTGAAGGTGAGGGGATACTTCGCATGGTCATTTCTTGATGTTTATGAATGGGATGCAGGCTACACAGTTCGATTTGGACTCACCTACGTCGATTACAAGAATAACTTGAAGAGATATCTCAAGTACTCTGCATACTGGTTCAAGATGTTCCTCCTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

291

Amino Acids

33.14

Weight (kDa)

8.85

Isoelectric Point (pI)

20.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	26 - 153	8.8e-28	Glycosyl hydrolase family 1
Glyco_hydro_1	PF00232	166 - 288	2e-38	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44480 AT2G44480 AT2G44480 AT2G44480 AT2G44480
fragaria_vesca	FvH4_7g00214 FvH4_7g00214 FvH4_7g00214 FvH4_7g00214 FvH4_7g00250 FvH4_7g00270
malus_domestica	MD07G1003400.v1.1
prunus_persica	Prupe.2G005100_v2.0.a1
pyrus_communis	pycom07g00340
rosa_chinensis	RchiOBHm_Chr1g0313661 RchiOBHm_Chr1g0313711 RchiOBHm_Chr1g0313741
rosa_laevigata	RLG00000030780 RLG00000030783 RLG00000030785
rosa_multiflora	Rmu_sc0009740.1_g000006 Rmu_ssc0000027.1_g000024
rosa_roxburghii	Rroxscaffold_4G00332110 Rroxscaffold_4G00332130
rosa_rugosa	RorugPtG0005800 RorugPtG0005900.1 RorugPtG0006000.1
rosa_samantha	Rh1AG005800 Rh1CG008900 Rh1CG009000 Rh1DG004000 Rh1DG004200
rosa_wichuraiana	Rw1G000340 Rw1G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	290
AccIII	TCCGGA	1 cut(s)	25
AciI	CCGC	1 cut(s)	231
AclWI	GGATC	2 cut(s)	143, 566
AcsI	RAATTY	2 cut(s)	301, 531
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	4 cut(s)	176, 566, 655, 839
AfeI	AGCGCT	1 cut(s)	495
AgsI	TTSAA	5 cut(s)	83, 106, 697, 823, 856
AjnI	CCWGG	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	585, 617
AluBI	AGCT	5 cut(s)	40, 410, 507, 541, 621
AluI	AGCT	5 cut(s)	40, 410, 507, 541, 621
Alw26I	GTCTC	1 cut(s)	423
AlwI	GGATC	2 cut(s)	143, 566
Ama87I	CYCGRG	1 cut(s)	575
Aor13HI	TCCGGA	1 cut(s)	25
Aor51HI	AGCGCT	1 cut(s)	495
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	3 cut(s)	277, 392, 407
ApoI	RAATTY	2 cut(s)	301, 531
AspLEI	GCGC	2 cut(s)	292, 496
AsuHPI	GGTGA	6 cut(s)	86, 128, 617, 727, 733, 787
AvaI	CYCGRG	1 cut(s)	575
BaeI	ACNNNNGTAYC	2 cut(s)	166, 199
BbvI	GCAGC	3 cut(s)	264, 379, 419
BccI	CCATC	5 cut(s)	37, 276, 432, 687, 710
BciT130I	CCWGG	1 cut(s)	198
BciVI	GTATCC	1 cut(s)	722
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	2 cut(s)	414, 497
BfoI	RGCGCY	1 cut(s)	497
BfuI	GTATCC	1 cut(s)	722
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	3 cut(s)	278, 393, 408
BlsI	GCNGC	3 cut(s)	279, 394, 409
BmcAI	AGTACT	1 cut(s)	839
Bme1390I	CCNGG	1 cut(s)	198
BmeT110I	CYCGRG	1 cut(s)	575
BmiI	GGNNCC	2 cut(s)	187, 480
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	3 cut(s)	194, 628, 757
BpuEI	CTTGAG	2 cut(s)	629, 818
BsaHI	GRCGYC	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	423
BsaWI	WCCGGW	1 cut(s)	25
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	3 cut(s)	152, 371, 854
BseAI	TCCGGA	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	198
BseGI	GGATG	3 cut(s)	443, 448, 772
BseMII	CTCAG	2 cut(s)	456, 494
BseNI	ACTGG	3 cut(s)	152, 371, 854
BseRI	GAGGAG	2 cut(s)	50, 857
BseXI	GCAGC	3 cut(s)	264, 379, 419
BseYI	CCCAGC	1 cut(s)	624
Bsh1236I	CGCG	1 cut(s)	290
BshFI	GGCC	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	575
BsiSI	CCGG	2 cut(s)	26, 234
BsmAI	GTCTC	1 cut(s)	423
BsnI	GGCC	1 cut(s)	267
Bso31I	GGTCTC	1 cut(s)	423
BsoBI	CYCGRG	1 cut(s)	575
Bsp13I	TCCGGA	1 cut(s)	25
Bsp143I	GATC	3 cut(s)	135, 499, 571
BspACI	CCGC	1 cut(s)	231
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	2 cut(s)	457, 495
BspEI	TCCGGA	1 cut(s)	25
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	2 cut(s)	187, 480
BspPI	GGATC	2 cut(s)	143, 566
BspTNI	GGTCTC	1 cut(s)	423
BsrFI	RCCGGY	1 cut(s)	233
BsrI	ACTGG	3 cut(s)	152, 371, 854
BssAI	RCCGGY	1 cut(s)	233
BssMI	GATC	3 cut(s)	135, 499, 571
BssNI	GRCGYC	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	2 cut(s)	653, 781
Bst6I	CTCTTC	1 cut(s)	818
BstACI	GRCGYC	1 cut(s)	14
BstC8I	GCNNGC	4 cut(s)	282, 397, 509, 772
BstDEI	CTNAG	2 cut(s)	465, 503
BstEII	GGTNACC	1 cut(s)	116
BstF5I	GGATG	3 cut(s)	443, 448, 772
BstFNI	CGCG	1 cut(s)	290
BstH2I	RGCGCY	1 cut(s)	497
BstHHI	GCGC	2 cut(s)	292, 496
BstKTI	GATC	3 cut(s)	138, 502, 574
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	3 cut(s)	135, 499, 571
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstNI	CCWGG	1 cut(s)	198
BstPI	GGTNACC	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	196
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	3 cut(s)	264, 379, 419
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
BsuI	GTATCC	1 cut(s)	722
BsuRI	GGCC	1 cut(s)	267
BtsCI	GGATG	3 cut(s)	443, 448, 772
Cac8I	GCNNGC	4 cut(s)	282, 397, 509, 772
CfoI	GCGC	2 cut(s)	292, 496
Cfr10I	RCCGGY	1 cut(s)	233
CseI	GACGC	1 cut(s)	3
CsiI	ACCWGGT	1 cut(s)	196
Csp6I	GTAC	4 cut(s)	175, 565, 654, 838
CviAII	CATG	1 cut(s)	738
CviQI	GTAC	4 cut(s)	175, 565, 654, 838
DdeI	CTNAG	2 cut(s)	465, 503
DpnI	GATC	3 cut(s)	137, 501, 573
DpnII	GATC	3 cut(s)	135, 499, 571
Eam1104I	CTCTTC	1 cut(s)	818
EarI	CTCTTC	1 cut(s)	818
Eco31I	GGTCTC	1 cut(s)	423
Eco32I	GATATC	1 cut(s)	830
Eco47III	AGCGCT	1 cut(s)	495
Eco88I	CYCGRG	1 cut(s)	575
Eco91I	GGTNACC	1 cut(s)	116
EcoO65I	GGTNACC	1 cut(s)	116
EcoRI	GAATTC	1 cut(s)	531
EcoRII	CCWGG	1 cut(s)	196
EcoRV	GATATC	1 cut(s)	830
FaeI	CATG	1 cut(s)	741
FalI	AAGNNNNNCTT	2 cut(s)	803, 835
FatI	CATG	1 cut(s)	737
Fnu4HI	GCNGC	3 cut(s)	278, 393, 408
FokI	GGATG	3 cut(s)	435, 450, 779
Fsp4HI	GCNGC	3 cut(s)	278, 393, 408
FspBI	CTAG	2 cut(s)	414, 497
GlaI	GCGC	2 cut(s)	291, 495
GluI	GCNGC	3 cut(s)	278, 393, 408
GsaI	CCCAGC	1 cut(s)	628
HaeII	RGCGCY	1 cut(s)	497
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	2 cut(s)	26, 234
HgaI	GACGC	1 cut(s)	3
HhaI	GCGC	2 cut(s)	292, 496
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	741
Hin6I	GCGC	2 cut(s)	290, 494
HinP1I	GCGC	2 cut(s)	290, 494
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	3 cut(s)	29, 47, 792
HpaII	CCGG	2 cut(s)	26, 234
HphI	GGTGA	6 cut(s)	86, 128, 617, 727, 733, 787
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	5 cut(s)	34, 144, 221, 385, 504
Hpy188III	TCNNGA	9 cut(s)	18, 26, 83, 346, 422, 536, 575, 749, 856
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	2 cut(s)	19, 806
HpyAV	CCTTC	1 cut(s)	712
HpyCH4III	ACNGT	2 cut(s)	653, 781
HpyCH4IV	ACGT	1 cut(s)	801
HpyCH4V	TGCA	6 cut(s)	194, 228, 299, 395, 770, 845
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	2 cut(s)	465, 503
HpySE526I	ACGT	1 cut(s)	801
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	1 cut(s)	741
HspAI	GCGC	2 cut(s)	290, 494
Kpn2I	TCCGGA	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	135, 499, 571
LmnI	GCTCC	2 cut(s)	37, 626
Lsp1109I	GCAGC	3 cut(s)	264, 379, 419
LweI	GCATC	3 cut(s)	194, 628, 757
MabI	ACCWGGT	1 cut(s)	196
MaeI	CTAG	2 cut(s)	414, 497
MaeII	ACGT	1 cut(s)	801
MaeIII	GTNAC	5 cut(s)	116, 154, 236, 358, 454
MalI	GATC	3 cut(s)	137, 501, 573
MboI	GATC	3 cut(s)	135, 499, 571
MboII	GAAGA	2 cut(s)	325, 835
MflI	RGATCY	1 cut(s)	499
MluCI	AATT	3 cut(s)	223, 301, 531
MlyI	GAGTC	3 cut(s)	38, 56, 786
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	8 cut(s)	28, 396, 601, 641, 653, 703, 717, 875
MroI	TCCGGA	1 cut(s)	25
MseI	TTAA	1 cut(s)	126
MspI	CCGG	2 cut(s)	26, 234
MspR9I	CCNGG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	198
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	1 cut(s)	296
NdeII	GATC	3 cut(s)	135, 499, 571
NlaIII	CATG	1 cut(s)	741
NlaIV	GGNNCC	2 cut(s)	187, 480
NmuCI	GTSAC	2 cut(s)	116, 358
PkrI	GCNGC	3 cut(s)	279, 394, 409
PleI	GAGTC	3 cut(s)	37, 55, 786
PpsI	GAGTC	3 cut(s)	37, 55, 786
Psp6I	CCWGG	1 cut(s)	196
PspEI	GGTNACC	1 cut(s)	116
PspFI	CCCAGC	1 cut(s)	624
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	2 cut(s)	187, 480
PsuI	RGATCY	1 cut(s)	499
RsaI	GTAC	4 cut(s)	176, 566, 655, 839
RsaNI	GTAC	4 cut(s)	175, 565, 654, 838
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	3 cut(s)	278, 393, 408
Sau3AI	GATC	3 cut(s)	135, 499, 571
ScaI	AGTACT	1 cut(s)	839
SchI	GAGTC	3 cut(s)	38, 56, 786
ScrFI	CCNGG	1 cut(s)	198
SexAI	ACCWGGT	1 cut(s)	196
SfaNI	GCATC	3 cut(s)	194, 628, 757
SmlI	CTYRAG	2 cut(s)	644, 833
SmoI	CTYRAG	2 cut(s)	644, 833
Sse9I	AATT	3 cut(s)	223, 301, 531
SsiI	CCGC	1 cut(s)	231
SspMI	CTAG	2 cut(s)	414, 497
StyD4I	CCNGG	1 cut(s)	196
TaaI	ACNGT	2 cut(s)	653, 781
TaiI	ACGT	1 cut(s)	804
TaqI	TCGA	5 cut(s)	17, 202, 535, 784, 804
TaqII	GACCGA	1 cut(s)	135
TasI	AATT	3 cut(s)	223, 301, 531
TatI	WGTACW	3 cut(s)	564, 653, 837
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TseFI	GTSAC	2 cut(s)	116, 358
TseI	GCWGC	3 cut(s)	277, 392, 407
Tsp45I	GTSAC	2 cut(s)	116, 358
TspDTI	ATGAA	2 cut(s)	675, 774
XapI	RAATTY	2 cut(s)	301, 531
XspI	CTAG	2 cut(s)	414, 497
ZrmI	AGTACT	1 cut(s)	839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.