Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003709

Physical Location & Seq

Genomic Coordinates Forward (+)

587490 .. 596535

Gene Structure 9046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG004000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGCCGGTGATGAAGATGTTGAAATTTTGCCTTGCAGAGGGAAAAGTCAAAGGTGGAGTGAACCAAGAAGGCGTAAAATTCTACAACAATCTTATAAATGAGCTCTTGTCGAATGGAATAATACCTTTTGTGACGCTTTTCCACTGGGATCTACCACAGGCTCTTGAAGATGAGTATGGTGGATTTTTAAATCATAAGATTGTTGGTGATTTTCAAGATTATGCCGATTTTTGTTTCAAAACATTTGGTGACCGAGTTAAGCATTGGATCACTCTGAACGAGCCAGTTACATACTGTGTCAACGGGTACAATGGTGGAACCAATGCACCTGGTCGATGCTCTAACTATGTCGGAAATTGCACCGCCGGTAACTCTGCTACAGAGCCTTACATTGTAGGCCATCATCTGCTGCTTGCTCACGCGCACTCTGCAAATTTATACAAGAAGAAGTATCAGGCTTCTCAAAAAGGGCAAATCGGGATTTCGGTTGTGACATACTGGTATTTAGCAAAATCGGAAACTGCTGCAAGCAAGAGGGCAGCTTCTAGGTCTCTTGATTTTGTTTTTGGATGGTTTGCTCATCCCGTTACATTCGGTGACTATCCTCAAACCATGAGAGCTTCTGTGGGTGATCGGTTGCCTAAATTCAGTAAAGAAGAAACTAAGCTCCTAAAAGGATCTCTAGATTTCCTTGGTGTCAATTACTACACAAGTAGTTATGCAGATGTTTCCTCACTCTCCACTAGTAATGTCAACCAAAGTTTCTTCGGAGATATGCATACTTCTCTCTCTACTGAGAAAAATGGGGTTCCTTTGGGTTCAGCGACTGCTTTGAGCTGGCTTTACATCTATCCAAAGGGAATTCGAGAGCTTATGTTATACATAAAAGAAAAGTACAATGATCCCGAGATTTACATTACTGAAAATGGTGTTGGTGAGGCAAATAATAGCTCCCAGCCCCTCAACGATGCCCTCAAGGATAGTACAAGGATAAGATACCATTCTCTCCATCTTTCATATCTTTTGAAGTCCATCAAGGAGGGGGTGAAGGTGAGGGGATACTTCGCATGGTCATTTCTTGATGTTTATGAATGGGATGCAGGCTACACAGTTCGATTTGGACTCACCTACGTCGATTACAAGAATAACTTGAAGAGATATCTCAAGTACTCTGCATACTGGTTCAAGATGTTCCTCCTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

401

Amino Acids

45.47

Weight (kDa)

8.84

Isoelectric Point (pI)

22.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	16 - 398	1.4e-115	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44480 AT2G44480 AT2G44480 AT2G44480 AT2G44480
fragaria_vesca	FvH4_7g00214 FvH4_7g00214 FvH4_7g00214 FvH4_7g00214 FvH4_7g00250 FvH4_7g00270
malus_domestica	MD07G1003400.v1.1
prunus_persica	Prupe.2G005100_v2.0.a1
pyrus_communis	pycom07g00340
rosa_chinensis	RchiOBHm_Chr1g0313661 RchiOBHm_Chr1g0313711 RchiOBHm_Chr1g0313741
rosa_laevigata	RLG00000030780 RLG00000030783 RLG00000030785
rosa_multiflora	Rmu_sc0009740.1_g000006 Rmu_ssc0000027.1_g000024
rosa_roxburghii	Rroxscaffold_4G00332110 Rroxscaffold_4G00332130
rosa_rugosa	RorugPtG0005800 RorugPtG0005900.1 RorugPtG0006000.1
rosa_samantha	Rh1AG005800 Rh1CG008900 Rh1CG009000 Rh1DG004000 Rh1DG004200
rosa_wichuraiana	Rw1G000340 Rw1G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	95
AccII	CGCG	1 cut(s)	422
AciI	CCGC	1 cut(s)	363
AclWI	GGATC	4 cut(s)	156, 275, 685, 896
AcsI	RAATTY	5 cut(s)	23, 77, 433, 644, 861
AfaI	GTAC	4 cut(s)	308, 896, 985, 1169
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	7 cut(s)	22, 167, 215, 238, 1027, 1153, 1186
AhlI	ACTAGT	1 cut(s)	743
AjnI	CCWGG	1 cut(s)	328
AjuI	GAANNNNNNNTTGG	2 cut(s)	915, 947
AluBI	AGCT	7 cut(s)	103, 542, 620, 667, 837, 871, 951
AluI	AGCT	7 cut(s)	103, 542, 620, 667, 837, 871, 951
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	555
AlwI	GGATC	4 cut(s)	156, 275, 685, 896
AlwNI	CAGNNNCTG	1 cut(s)	827
Ama87I	CYCGRG	1 cut(s)	905
AoxI	GGCC	1 cut(s)	397
ApeKI	GCWGC	3 cut(s)	409, 524, 539
ApoI	RAATTY	5 cut(s)	23, 77, 433, 644, 861
AspLEI	GCGC	1 cut(s)	424
AsuHPI	GGTGA	9 cut(s)	19, 218, 260, 608, 641, 947, 1057, 1063, 1117
AvaI	CYCGRG	1 cut(s)	905
BaeI	ACNNNNGTAYC	2 cut(s)	298, 331
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	3 cut(s)	396, 511, 551
BccI	CCATC	4 cut(s)	408, 564, 1017, 1040
BciT130I	CCWGG	1 cut(s)	330
BciVI	GTATCC	1 cut(s)	1052
BcoDI	GTCTC	1 cut(s)	555
BcuI	ACTAGT	1 cut(s)	743
BfaI	CTAG	3 cut(s)	546, 683, 744
BfmI	CTRYAG	1 cut(s)	378
BfuI	GTATCC	1 cut(s)	1052
BisI	GCNGC	3 cut(s)	410, 525, 540
BlsI	GCNGC	3 cut(s)	411, 526, 541
BmcAI	AGTACT	1 cut(s)	1169
Bme1390I	CCNGG	1 cut(s)	330
BmeT110I	CYCGRG	1 cut(s)	905
BmiI	GGNNCC	2 cut(s)	319, 810
BmrFI	CCNGG	1 cut(s)	330
BmrI	ACTGGG	1 cut(s)	154
BmsI	GCATC	3 cut(s)	326, 958, 1087
BmuI	ACTGGG	1 cut(s)	154
BpuEI	CTTGAG	2 cut(s)	959, 1148
BsaI	GGTCTC	1 cut(s)	555
BsaJI	CCNNGG	1 cut(s)	691
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse118I	RCCGGY	2 cut(s)	4, 365
Bse1I	ACTGG	4 cut(s)	149, 284, 503, 1184
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	691
BseGI	GGATG	3 cut(s)	575, 580, 1102
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	786
BseNI	ACTGG	4 cut(s)	149, 284, 503, 1184
BseRI	GAGGAG	1 cut(s)	1187
BseXI	GCAGC	3 cut(s)	396, 511, 551
BseYI	CCCAGC	1 cut(s)	954
Bsh1236I	CGCG	1 cut(s)	422
BshFI	GGCC	1 cut(s)	399
BsiHKAI	GWGCWC	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	905
BsiSI	CCGG	2 cut(s)	5, 366
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	555
BsnI	GGCC	1 cut(s)	399
Bso31I	GGTCTC	1 cut(s)	555
BsoBI	CYCGRG	1 cut(s)	905
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	5 cut(s)	148, 267, 631, 677, 901
BspACI	CCGC	1 cut(s)	363
BspANI	GGCC	1 cut(s)	399
BspCNI	CTCAG	1 cut(s)	787
BspFNI	CGCG	1 cut(s)	422
BspLI	GGNNCC	2 cut(s)	319, 810
BspPI	GGATC	4 cut(s)	156, 275, 685, 896
BspTNI	GGTCTC	1 cut(s)	555
BsrFI	RCCGGY	2 cut(s)	4, 365
BsrI	ACTGG	4 cut(s)	149, 284, 503, 1184
BssAI	RCCGGY	2 cut(s)	4, 365
BssECI	CCNNGG	1 cut(s)	691
BssMI	GATC	5 cut(s)	148, 267, 631, 677, 901
BssT1I	CCWWGG	1 cut(s)	691
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	2 cut(s)	296, 1111
Bst6I	CTCTTC	1 cut(s)	1148
BstC8I	GCNNGC	4 cut(s)	414, 529, 839, 1102
BstDEI	CTNAG	2 cut(s)	663, 795
BstEII	GGTNACC	1 cut(s)	248
BstENI	CCTNNNNNAGG	1 cut(s)	35
BstF5I	GGATG	3 cut(s)	575, 580, 1102
BstFNI	CGCG	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	5 cut(s)	151, 270, 634, 680, 904
BstMAI	GTCTC	1 cut(s)	555
BstMBI	GATC	5 cut(s)	148, 267, 631, 677, 901
BstMWI	GCNNNNNNNGC	1 cut(s)	428
BstNI	CCWGG	1 cut(s)	330
BstPI	GGTNACC	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	378
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	3 cut(s)	396, 511, 551
BstX2I	RGATCY	2 cut(s)	148, 677
BstYI	RGATCY	2 cut(s)	148, 677
BsuI	GTATCC	1 cut(s)	1052
BsuRI	GGCC	1 cut(s)	399
BtsCI	GGATG	3 cut(s)	575, 580, 1102
BtsIMutI	CAGTG	1 cut(s)	142
Cac8I	GCNNGC	4 cut(s)	414, 529, 839, 1102
CaiI	CAGNNNCTG	1 cut(s)	827
CfoI	GCGC	1 cut(s)	424
Cfr10I	RCCGGY	2 cut(s)	4, 365
CseI	GACGC	1 cut(s)	142
CsiI	ACCWGGT	1 cut(s)	328
Csp6I	GTAC	4 cut(s)	307, 895, 984, 1168
CviAII	CATG	2 cut(s)	613, 1068
CviQI	GTAC	4 cut(s)	307, 895, 984, 1168
DdeI	CTNAG	2 cut(s)	663, 795
DpnI	GATC	5 cut(s)	150, 269, 633, 679, 903
DpnII	GATC	5 cut(s)	148, 267, 631, 677, 901
DraI	TTTAAA	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	1148
EarI	CTCTTC	1 cut(s)	1148
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	691
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	555
Eco32I	GATATC	1 cut(s)	1160
Eco53kI	GAGCTC	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	905
Eco91I	GGTNACC	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	103
EcoNI	CCTNNNNNAGG	1 cut(s)	35
EcoO65I	GGTNACC	1 cut(s)	248
EcoRI	GAATTC	1 cut(s)	861
EcoRII	CCWGG	1 cut(s)	328
EcoRV	GATATC	1 cut(s)	1160
EcoT14I	CCWWGG	1 cut(s)	691
EcoT22I	ATGCAT	1 cut(s)	780
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	691
FaeI	CATG	2 cut(s)	616, 1071
FalI	AAGNNNNNCTT	2 cut(s)	1133, 1165
FatI	CATG	2 cut(s)	612, 1067
Fnu4HI	GCNGC	3 cut(s)	410, 525, 540
FokI	GGATG	3 cut(s)	567, 582, 1109
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	3 cut(s)	410, 525, 540
FspBI	CTAG	3 cut(s)	546, 683, 744
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	3 cut(s)	410, 525, 540
GsaI	CCCAGC	1 cut(s)	958
HaeIII	GGCC	1 cut(s)	399
HapII	CCGG	2 cut(s)	5, 366
HgaI	GACGC	1 cut(s)	142
HhaI	GCGC	1 cut(s)	424
Hin1II	CATG	2 cut(s)	616, 1071
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HincII	GTYRAC	2 cut(s)	301, 754
HindII	GTYRAC	2 cut(s)	301, 754
HinfI	GANTC	1 cut(s)	1122
HpaII	CCGG	2 cut(s)	5, 366
HphI	GGTGA	9 cut(s)	19, 218, 260, 608, 641, 947, 1057, 1063, 1117
Hpy166II	GTNNAC	3 cut(s)	61, 301, 754
Hpy188I	TCNGA	4 cut(s)	276, 353, 517, 770
Hpy188III	TCNNGA	9 cut(s)	164, 215, 478, 554, 683, 866, 905, 1079, 1186
Hpy8I	GTNNAC	3 cut(s)	61, 301, 754
Hpy99I	CGWCG	1 cut(s)	1136
HpyAV	CCTTC	2 cut(s)	62, 1042
HpyCH4III	ACNGT	2 cut(s)	296, 1111
HpyCH4IV	ACGT	1 cut(s)	1131
HpyCH4V	TGCA	9 cut(s)	35, 326, 360, 431, 527, 722, 778, 1100, 1175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	428
HpyF3I	CTNAG	2 cut(s)	663, 795
HpySE526I	ACGT	1 cut(s)	1131
Hsp92II	CATG	2 cut(s)	616, 1071
HspAI	GCGC	1 cut(s)	422
Kzo9I	GATC	5 cut(s)	148, 267, 631, 677, 901
LmnI	GCTCC	2 cut(s)	672, 956
Lsp1109I	GCAGC	3 cut(s)	396, 511, 551
LweI	GCATC	3 cut(s)	326, 958, 1087
MabI	ACCWGGT	1 cut(s)	328
MaeI	CTAG	3 cut(s)	546, 683, 744
MaeII	ACGT	1 cut(s)	1131
MaeIII	GTNAC	7 cut(s)	130, 248, 286, 368, 490, 586, 596
MalI	GATC	5 cut(s)	150, 269, 633, 679, 903
MboI	GATC	5 cut(s)	148, 267, 631, 677, 901
MboII	GAAGA	6 cut(s)	25, 179, 457, 668, 757, 1165
MflI	RGATCY	2 cut(s)	148, 677
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	7 cut(s)	23, 77, 355, 433, 644, 700, 861
MlyI	GAGTC	1 cut(s)	1116
MmeI	TCCRAC	1 cut(s)	331
Mph1103I	ATGCAT	1 cut(s)	780
MseI	TTAA	2 cut(s)	188, 258
MspI	CCGG	2 cut(s)	5, 366
MspR9I	CCNGG	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	1 cut(s)	428
NdeII	GATC	5 cut(s)	148, 267, 631, 677, 901
NlaIII	CATG	2 cut(s)	616, 1071
NlaIV	GGNNCC	2 cut(s)	319, 810
NmuCI	GTSAC	4 cut(s)	130, 248, 490, 596
NsiI	ATGCAT	1 cut(s)	780
PkrI	GCNGC	3 cut(s)	411, 526, 541
PleI	GAGTC	1 cut(s)	1116
PpsI	GAGTC	1 cut(s)	1116
PsiI	TTATAA	1 cut(s)	95
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	328
PspEI	GGTNACC	1 cut(s)	248
PspFI	CCCAGC	1 cut(s)	954
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	2 cut(s)	319, 810
PstNI	CAGNNNCTG	1 cut(s)	827
PsuI	RGATCY	2 cut(s)	148, 677
RsaI	GTAC	4 cut(s)	308, 896, 985, 1169
RsaNI	GTAC	4 cut(s)	307, 895, 984, 1168
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	188, 258
SatI	GCNGC	3 cut(s)	410, 525, 540
Sau3AI	GATC	5 cut(s)	148, 267, 631, 677, 901
ScaI	AGTACT	1 cut(s)	1169
SchI	GAGTC	1 cut(s)	1116
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	1 cut(s)	105
SexAI	ACCWGGT	1 cut(s)	328
SfaNI	GCATC	3 cut(s)	326, 958, 1087
SfcI	CTRYAG	1 cut(s)	378
SmlI	CTYRAG	2 cut(s)	974, 1163
SmoI	CTYRAG	2 cut(s)	974, 1163
SpeI	ACTAGT	1 cut(s)	743
Sse9I	AATT	7 cut(s)	23, 77, 355, 433, 644, 700, 861
SsiI	CCGC	1 cut(s)	363
SspMI	CTAG	3 cut(s)	546, 683, 744
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	691
TaaI	ACNGT	2 cut(s)	296, 1111
TaiI	ACGT	1 cut(s)	1134
TaqI	TCGA	5 cut(s)	110, 334, 865, 1114, 1134
TaqII	GACCGA	1 cut(s)	267
TasI	AATT	7 cut(s)	23, 77, 355, 433, 644, 700, 861
TatI	WGTACW	3 cut(s)	894, 983, 1167
Tru1I	TTAA	2 cut(s)	188, 258
Tru9I	TTAA	2 cut(s)	188, 258
TscAI	CASTG	1 cut(s)	149
TseFI	GTSAC	4 cut(s)	130, 248, 490, 596
TseI	GCWGC	3 cut(s)	409, 524, 539
Tsp45I	GTSAC	4 cut(s)	130, 248, 490, 596
TspDTI	ATGAA	3 cut(s)	26, 1005, 1104
TspRI	CASTG	1 cut(s)	149
XagI	CCTNNNNNAGG	1 cut(s)	35
XapI	RAATTY	5 cut(s)	23, 77, 433, 644, 861
XbaI	TCTAGA	1 cut(s)	682
XspI	CTAG	3 cut(s)	546, 683, 744
ZrmI	AGTACT	1 cut(s)	1169
Zsp2I	ATGCAT	1 cut(s)	780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.