RLG00000030785

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
67443951 .. 67447884
3934 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030785

Sequence Viewer

Length: 1560 bp
ATGGGTGGTCGTCCTCTGCTCTTCTTCATCTTGATCTTGATCTGCCTCATACTCACTGCTCTTGTTGGCTCATCAGCAAGCAATGAGGCAGCTGCTGCTGCTGCTCCTCGTCATTATTCGATTCCATTCAATAGAAGTAGCTTCCCAGCTAGTTTCATCTTCGGAGCTGGTTCTGCTGCTTATCAGACTGAAGGAGCAGCACATATCCATGGAAAGGGACCAAGCATATGGGACACTTTCACTACAAAACATCAAGAAAAAATAACTGATGGTAGCAACGGGGATGTAGCAGATGACTTTTACCATCGTTATAAGGAAGATGTGAAATTGATGAAAAAAGTCGGTTTAGACTCCTTCAGATTTTCAATCTCATGGTCAAGATTACTACCTAAGGGAAAAGTCAAAGGTGGAGTGAACCAAGAAGGCGTAAAATTCTACAACAATCTTATAAATGAGCTCTTGTCGAATGGAATAATACCTTTTGTGACGCTTTTCCACTGGGATCTACCACAGGCTCTTGAAGATGAGTATGGTGGATTTTTAAATCATAAGATTGTTGGTGATTTTCAAGATTATGCGGATTTTTGTTTCAAAACATTTGGTGACCGAGTTAAGCATTGGATCACTCTGAACGAGCCTGTTACCTTCTGTGTCAACGGGTACAATGGTGGAACCAATGCACCTGGTCGATGCTCTAACTATGTCGGAAATTGCACCGCCGGTAACTCTGCCACGGAGCCTTACATTGTAGGCCATCATCTTCTGCTTGCTCACGCGTACTCTGCAAATTTATACAAGAAGAAGTATCAGGCTTCTCAACAAGGGCAAATCGGGATTTCGGTTGTGACATACTGGTATTTAGCAAAATCAGAAACTGCTGCAAGCAAGAGGGCAGCTTCTAGGTCTCTTGATTTTGTTTTTGGATGGTTTGCTCATCCCGTTACATTCGGTGACTATCCTCAAACCATGAGAGCTTCTGTGGGTGATCGGTTGCCTAAATTCAGTAAAGAAGAAACTAAGCTCCTAAAAGGATCTCTAGATTTCCTTGGTGTCAATTACTACACAAGTAGTTATGCAGATGTTTCCTCACTCTCCACTAGTAATGTCAACCAAAGTTTCTTCACAGACATGCATACTTCTCTCTCTACTGAGAAAAATGGGGTTCCTTTGGGTTCAGCGACTGCTTTGAGCTGGCTTTACATCTATCCAAAGGGAATTCGAGAGCTTATGCTATACATAAAAGAAAAGTACAATGATCCCGAGATTTACATTACTGAAAATGGTGTTGGTGAGGCAAATAATAGCTCCCAGCCCCTCAACGATGCCCTCAAGGATAGTACAAGGATAAGATACCATTCTCTCCATCTTTCATATCTTTTGAAGTCCATCAAGGAGGGAGTGAAGGTGAGGGGATACTTTGCATGGTCATTTGTTGATGTTTATGAATGGGATTCAGGATACACAGTTCGATTTGGACTCACCTACGTCGATTACAAGAATAACTTGAAGAGGTATCTCAAGTACTCTGCATACTGGTTCAAGATGTTCCTCCTCAAATGA

Protein Analysis

520

Amino Acids

58.3

Weight (kDa)

8.87

Isoelectric Point (pI)

26.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 46 - 516 6.7e-156 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 312, 449
AccII CGCG 1 cut(s) 776
AciI CCGC 2 cut(s) 578, 717
AclWI GGATC 4 cut(s) 510, 629, 1039, 1250
AcsI RAATTY 4 cut(s) 431, 787, 998, 1215
AcuI CTGAAG 2 cut(s) 210, 340
AfaI GTAC 5 cut(s) 662, 779, 1250, 1339, 1523
AfiI CCNNNNNNNGG 1 cut(s) 214
AflIII ACRYGT 1 cut(s) 774
AgsI TTSAA 8 cut(s) 130, 366, 521, 569, 592, 1381, 1507, 1540
AhlI ACTAGT 1 cut(s) 1097
AjnI CCWGG 1 cut(s) 682
AjuI GAANNNNNNNTTGG 2 cut(s) 1269, 1301
AloI GAACNNNNNNTCC 2 cut(s) 1449, 1481
Alw21I GWGCWC 1 cut(s) 459
Alw26I GTCTC 1 cut(s) 909
AlwI GGATC 4 cut(s) 510, 629, 1039, 1250
AlwNI CAGNNNCTG 3 cut(s) 95, 875, 1181
Ama87I CYCGRG 1 cut(s) 1259
AoxI GGCC 1 cut(s) 751
ApeKI GCWGC 9 cut(s) 89, 92, 95, 98, 101, 176, 197, 878, 893
ApoI RAATTY 4 cut(s) 431, 787, 998, 1215
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 7 cut(s) 572, 614, 962, 995, 1301, 1417, 1471
AvaI CYCGRG 1 cut(s) 1259
AvaII GGWCC 1 cut(s) 218
AxyI CCTNAGG 1 cut(s) 390
BaeI ACNNNNGTAYC 2 cut(s) 652, 685
BanII GRGCYC 1 cut(s) 459
Bbv12I GWGCWC 1 cut(s) 459
BbvI GCAGC 9 cut(s) 79, 82, 85, 88, 101, 163, 209, 865, 905
BccI CCATC 6 cut(s) 263, 312, 762, 918, 1371, 1394
BciT130I CCWGG 1 cut(s) 684
BciVI GTATCC 2 cut(s) 1406, 1451
BcoDI GTCTC 1 cut(s) 909
BcuI ACTAGT 1 cut(s) 1097
BfaI CTAG 4 cut(s) 150, 900, 1037, 1098
BfuI GTATCC 2 cut(s) 1406, 1451
BisI GCNGC 9 cut(s) 90, 93, 96, 99, 102, 177, 198, 879, 894
BlsI GCNGC 9 cut(s) 91, 94, 97, 100, 103, 178, 199, 880, 895
BmcAI AGTACT 1 cut(s) 1523
Bme1390I CCNGG 1 cut(s) 684
Bme18I GGWCC 1 cut(s) 218
BmeT110I CYCGRG 1 cut(s) 1259
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 4 cut(s) 219, 673, 738, 1164
BmrFI CCNGG 1 cut(s) 684
BmrI ACTGGG 1 cut(s) 508
BmsI GCATC 2 cut(s) 680, 1312
BmuI ACTGGG 1 cut(s) 508
BpuEI CTTGAG 2 cut(s) 1313, 1502
BsaBI GATNNNNATC 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 909
BsaJI CCNNGG 3 cut(s) 208, 732, 1045
BsaXI ACNNNNNCTCC 2 cut(s) 1389, 1419
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse118I RCCGGY 1 cut(s) 719
Bse1I ACTGG 3 cut(s) 503, 857, 1538
Bse21I CCTNAGG 1 cut(s) 390
Bse3DI GCAATG 1 cut(s) 88
Bse8I GATNNNNATC 1 cut(s) 38
BseBI CCWGG 1 cut(s) 684
BseDI CCNNGG 3 cut(s) 208, 732, 1045
BseGI GGATG 3 cut(s) 289, 929, 934
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 1140
BseNI ACTGG 3 cut(s) 503, 857, 1538
BseRI GAGGAG 2 cut(s) 96, 1541
BseXI GCAGC 9 cut(s) 79, 82, 85, 88, 101, 163, 209, 865, 905
BseYI CCCAGC 2 cut(s) 145, 1308
Bsh1236I CGCG 1 cut(s) 776
BshFI GGCC 1 cut(s) 753
BsiHKAI GWGCWC 1 cut(s) 459
BsiHKCI CYCGRG 1 cut(s) 1259
BsiSI CCGG 1 cut(s) 720
BslFI GGGAC 2 cut(s) 231, 245
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 909
BsmFI GGGAC 2 cut(s) 231, 245
BsnI GGCC 1 cut(s) 753
Bso31I GGTCTC 1 cut(s) 909
BsoBI CYCGRG 1 cut(s) 1259
Bsp1286I GDGCHC 1 cut(s) 459
Bsp143I GATC 7 cut(s) 33, 39, 502, 621, 985, 1031, 1255
Bsp19I CCATGG 1 cut(s) 208
BspACI CCGC 2 cut(s) 578, 717
BspANI GGCC 1 cut(s) 753
BspCNI CTCAG 1 cut(s) 1141
BspFNI CGCG 1 cut(s) 776
BspLI GGNNCC 4 cut(s) 219, 673, 738, 1164
BspPI GGATC 4 cut(s) 510, 629, 1039, 1250
BspQI GCTCTTC 1 cut(s) 26
BspTNI GGTCTC 1 cut(s) 909
BsrDI GCAATG 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 719
BsrI ACTGG 3 cut(s) 503, 857, 1538
BssAI RCCGGY 1 cut(s) 719
BssECI CCNNGG 3 cut(s) 208, 732, 1045
BssMI GATC 7 cut(s) 33, 39, 502, 621, 985, 1031, 1255
BssT1I CCWWGG 2 cut(s) 208, 1045
Bst2UI CCWGG 1 cut(s) 684
Bst4CI ACNGT 1 cut(s) 1465
Bst6I CTCTTC 2 cut(s) 26, 1502
BstAPI GCANNNNNTGC 1 cut(s) 95
BstC8I GCNNGC 4 cut(s) 79, 768, 883, 1193
BstDEI CTNAG 3 cut(s) 390, 1017, 1149
BstDSI CCRYGG 2 cut(s) 208, 732
BstEII GGTNACC 1 cut(s) 602
BstF5I GGATG 3 cut(s) 289, 929, 934
BstFNI CGCG 1 cut(s) 776
BstKTI GATC 7 cut(s) 36, 42, 505, 624, 988, 1034, 1258
BstMAI GTCTC 1 cut(s) 909
BstMBI GATC 7 cut(s) 33, 39, 502, 621, 985, 1031, 1255
BstMWI GCNNNNNNNGC 5 cut(s) 95, 98, 101, 173, 782
BstNI CCWGG 1 cut(s) 684
BstNSI RCATGY 1 cut(s) 1132
BstPI GGTNACC 1 cut(s) 602
BstSCI CCNGG 1 cut(s) 682
BstUI CGCG 1 cut(s) 776
BstV1I GCAGC 9 cut(s) 79, 82, 85, 88, 101, 163, 209, 865, 905
BstX2I RGATCY 2 cut(s) 502, 1031
BstXI CCANNNNNNTGG 1 cut(s) 228
BstYI RGATCY 2 cut(s) 502, 1031
Bsu36I CCTNAGG 1 cut(s) 390
BsuI GTATCC 2 cut(s) 1406, 1451
BsuRI GGCC 1 cut(s) 753
BtgI CCRYGG 2 cut(s) 208, 732
BtsCI GGATG 3 cut(s) 289, 929, 934
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 2 cut(s) 54, 496
Cac8I GCNNGC 4 cut(s) 79, 768, 883, 1193
CaiI CAGNNNCTG 3 cut(s) 95, 875, 1181
Cfr10I RCCGGY 1 cut(s) 719
Cfr13I GGNCC 1 cut(s) 218
CseI GACGC 1 cut(s) 496
CsiI ACCWGGT 1 cut(s) 682
Csp6I GTAC 5 cut(s) 661, 778, 1249, 1338, 1522
CviAII CATG 5 cut(s) 209, 372, 967, 1129, 1422
CviQI GTAC 5 cut(s) 661, 778, 1249, 1338, 1522
DdeI CTNAG 3 cut(s) 390, 1017, 1149
DpnI GATC 7 cut(s) 35, 41, 504, 623, 987, 1033, 1257
DpnII GATC 7 cut(s) 33, 39, 502, 621, 985, 1031, 1255
DraI TTTAAA 1 cut(s) 543
Eam1104I CTCTTC 2 cut(s) 26, 1502
EarI CTCTTC 2 cut(s) 26, 1502
Ecl136II GAGCTC 1 cut(s) 457
Eco130I CCWWGG 2 cut(s) 208, 1045
Eco24I GRGCYC 1 cut(s) 459
Eco31I GGTCTC 1 cut(s) 909
Eco47I GGWCC 1 cut(s) 218
Eco53kI GAGCTC 1 cut(s) 457
Eco57I CTGAAG 2 cut(s) 210, 340
Eco81I CCTNAGG 1 cut(s) 390
Eco88I CYCGRG 1 cut(s) 1259
Eco91I GGTNACC 1 cut(s) 602
EcoICRI GAGCTC 1 cut(s) 457
EcoO65I GGTNACC 1 cut(s) 602
EcoRI GAATTC 1 cut(s) 1215
EcoRII CCWGG 1 cut(s) 682
EcoT14I CCWWGG 2 cut(s) 208, 1045
EcoT22I ATGCAT 1 cut(s) 1134
EcoT38I GRGCYC 1 cut(s) 459
ErhI CCWWGG 2 cut(s) 208, 1045
FaeI CATG 5 cut(s) 212, 375, 970, 1132, 1425
FalI AAGNNNNNCTT 2 cut(s) 1487, 1519
FaqI GGGAC 2 cut(s) 231, 245
FatI CATG 5 cut(s) 208, 371, 966, 1128, 1421
FauNDI CATATG 1 cut(s) 227
Fnu4HI GCNGC 9 cut(s) 90, 93, 96, 99, 102, 177, 198, 879, 894
FokI GGATG 3 cut(s) 296, 921, 936
FriOI GRGCYC 1 cut(s) 459
Fsp4HI GCNGC 9 cut(s) 90, 93, 96, 99, 102, 177, 198, 879, 894
FspBI CTAG 4 cut(s) 150, 900, 1037, 1098
GluI GCNGC 9 cut(s) 90, 93, 96, 99, 102, 177, 198, 879, 894
GsaI CCCAGC 2 cut(s) 149, 1312
HaeIII GGCC 1 cut(s) 753
HapII CCGG 1 cut(s) 720
HgaI GACGC 1 cut(s) 496
Hin1II CATG 5 cut(s) 212, 375, 970, 1132, 1425
HincII GTYRAC 2 cut(s) 655, 1108
HindII GTYRAC 2 cut(s) 655, 1108
HinfI GANTC 4 cut(s) 121, 350, 1451, 1476
HpaII CCGG 1 cut(s) 720
HphI GGTGA 7 cut(s) 572, 614, 962, 995, 1301, 1417, 1471
Hpy166II GTNNAC 3 cut(s) 415, 655, 1108
Hpy188I TCNGA 6 cut(s) 164, 186, 359, 630, 707, 871
Hpy8I GTNNAC 3 cut(s) 415, 655, 1108
Hpy99I CGWCG 1 cut(s) 1490
HpyAV CCTTC 5 cut(s) 185, 364, 416, 655, 1396
HpyCH4III ACNGT 1 cut(s) 1465
HpyCH4IV ACGT 1 cut(s) 1485
HpyCH4V TGCA 8 cut(s) 680, 714, 785, 881, 1076, 1132, 1421, 1529
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 98, 101, 173, 782
HpyF3I CTNAG 3 cut(s) 390, 1017, 1149
HpySE526I ACGT 1 cut(s) 1485
Hsp92II CATG 5 cut(s) 212, 375, 970, 1132, 1425
Kzo9I GATC 7 cut(s) 33, 39, 502, 621, 985, 1031, 1255
LguI GCTCTTC 1 cut(s) 26
LmnI GCTCC 6 cut(s) 109, 164, 194, 736, 1026, 1310
Lsp1109I GCAGC 9 cut(s) 79, 82, 85, 88, 101, 163, 209, 865, 905
LweI GCATC 2 cut(s) 680, 1312
MabI ACCWGGT 1 cut(s) 682
MaeI CTAG 4 cut(s) 150, 900, 1037, 1098
MaeII ACGT 1 cut(s) 1485
MaeIII GTNAC 7 cut(s) 484, 602, 640, 722, 844, 940, 950
MalI GATC 7 cut(s) 35, 41, 504, 623, 987, 1033, 1257
MboI GATC 7 cut(s) 33, 39, 502, 621, 985, 1031, 1255
MflI RGATCY 2 cut(s) 502, 1031
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 7 cut(s) 326, 431, 709, 787, 998, 1054, 1215
MluI ACGCGT 1 cut(s) 774
MlyI GAGTC 2 cut(s) 344, 1470
MmeI TCCRAC 1 cut(s) 685
Mph1103I ATGCAT 1 cut(s) 1134
MseI TTAA 2 cut(s) 542, 612
MslI CAYNNNNRTG 2 cut(s) 207, 1127
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 1 cut(s) 720
MspR9I CCNGG 1 cut(s) 684
MvaI CCWGG 1 cut(s) 684
MvnI CGCG 1 cut(s) 776
MwoI GCNNNNNNNGC 5 cut(s) 95, 98, 101, 173, 782
NcoI CCATGG 1 cut(s) 208
NdeI CATATG 1 cut(s) 227
NdeII GATC 7 cut(s) 33, 39, 502, 621, 985, 1031, 1255
NlaIII CATG 5 cut(s) 212, 375, 970, 1132, 1425
NlaIV GGNNCC 4 cut(s) 219, 673, 738, 1164
NmuCI GTSAC 4 cut(s) 484, 602, 844, 950
NsiI ATGCAT 1 cut(s) 1134
NspI RCATGY 1 cut(s) 1132
PciSI GCTCTTC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 121, 1451
PkrI GCNGC 9 cut(s) 91, 94, 97, 100, 103, 178, 199, 880, 895
PleI GAGTC 2 cut(s) 344, 1470
PpsI GAGTC 2 cut(s) 344, 1470
PsiI TTATAA 2 cut(s) 312, 449
Psp124BI GAGCTC 1 cut(s) 459
Psp6I CCWGG 1 cut(s) 682
PspEI GGTNACC 1 cut(s) 602
PspFI CCCAGC 2 cut(s) 145, 1308
PspGI CCWGG 1 cut(s) 682
PspN4I GGNNCC 4 cut(s) 219, 673, 738, 1164
PspPI GGNCC 1 cut(s) 218
PstNI CAGNNNCTG 3 cut(s) 95, 875, 1181
PsuI RGATCY 2 cut(s) 502, 1031
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 5 cut(s) 662, 779, 1250, 1339, 1523
RsaNI GTAC 5 cut(s) 661, 778, 1249, 1338, 1522
RseI CAYNNNNRTG 2 cut(s) 207, 1127
SacI GAGCTC 1 cut(s) 459
SapI GCTCTTC 1 cut(s) 26
SaqAI TTAA 2 cut(s) 542, 612
SatI GCNGC 9 cut(s) 90, 93, 96, 99, 102, 177, 198, 879, 894
Sau3AI GATC 7 cut(s) 33, 39, 502, 621, 985, 1031, 1255
Sau96I GGNCC 1 cut(s) 218
ScaI AGTACT 1 cut(s) 1523
SchI GAGTC 2 cut(s) 344, 1470
ScrFI CCNGG 1 cut(s) 684
SduI GDGCHC 1 cut(s) 459
SexAI ACCWGGT 1 cut(s) 682
SfaNI GCATC 2 cut(s) 680, 1312
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 2 cut(s) 207, 1127
SmlI CTYRAG 2 cut(s) 1328, 1517
SmoI CTYRAG 2 cut(s) 1328, 1517
SpeI ACTAGT 1 cut(s) 1097
Sse9I AATT 7 cut(s) 326, 431, 709, 787, 998, 1054, 1215
SsiI CCGC 2 cut(s) 578, 717
SspMI CTAG 4 cut(s) 150, 900, 1037, 1098
SstI GAGCTC 1 cut(s) 459
StyD4I CCNGG 1 cut(s) 682
StyI CCWWGG 2 cut(s) 208, 1045
TaaI ACNGT 1 cut(s) 1465
TaiI ACGT 1 cut(s) 1488
TaqI TCGA 6 cut(s) 119, 464, 688, 1219, 1468, 1488
TaqII GACCGA 1 cut(s) 621
TasI AATT 7 cut(s) 326, 431, 709, 787, 998, 1054, 1215
TatI WGTACW 3 cut(s) 1248, 1337, 1521
TfiI GAWTC 2 cut(s) 121, 1451
Tru1I TTAA 2 cut(s) 542, 612
Tru9I TTAA 2 cut(s) 542, 612
TscAI CASTG 2 cut(s) 61, 503
TseFI GTSAC 4 cut(s) 484, 602, 844, 950
TseI GCWGC 9 cut(s) 89, 92, 95, 98, 101, 176, 197, 878, 893
Tsp45I GTSAC 4 cut(s) 484, 602, 844, 950
TspDTI ATGAA 5 cut(s) 16, 145, 347, 1359, 1458
TspGWI ACGGA 1 cut(s) 749
TspRI CASTG 2 cut(s) 61, 503
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 4 cut(s) 431, 787, 998, 1215
XbaI TCTAGA 1 cut(s) 1036
XceI RCATGY 1 cut(s) 1132
XspI CTAG 4 cut(s) 150, 900, 1037, 1098
ZrmI AGTACT 1 cut(s) 1523
Zsp2I ATGCAT 1 cut(s) 1134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.