Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008314

Physical Location & Seq

Genomic Coordinates Forward (+)

18603455 .. 18604878

Gene Structure 1424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G45120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGAGAGATACAAGTGTAGATTTTGCTTCAAGAGCTTCATCAATGGAAGAGCTTTAGGTGGTCACATGAGATCTCACATGCTTACTCTTTCTGCAGAACGTTGTGTAATAACTGGTGAAGCAGAAGAAGAAGTAGAGGAACGGCCGAGTCAACTCTGTGACGACGACGACGATACCGAGTCCGATGCTTCTTCTTCTTCTGGTGAGTTTGATAATCAAAAGATGAATCGTCTTGATGATGAATTGGAGTTTGATTTCGCTGAAGACGACGACGTTGAAAGTGAAACCGAGTCGTCCAGGATTAACCCAACTCGGCGACGATCTAAACGAACTCGGAAACTTGGATCGTTTGATTTCGACTTTGAGAAGCTAACAACGAGCCAACCCAGTGAGTTAGTGGCCGAGCCAGAGCATCACAGCTCAGCTTCTGATACAACAACGGAGGAAGATCTCGCCTTTTGTCTCATTATGCTGTCCAGAGACAAATGGAAGCAACAGAAGAAGAAGAAGCAACGTGTAGAAGAAGATGAGACAGATCATGACAGTGAAGATTACAAATCAAGCAAGAGCAGAGGGAGATTCAAGTGTGAGACTTGTGGTAAAGTGTTTAAATCGTATCAAGCATTAGGAGGACACAGAGCAAGCCACAAGAAGAACAAGGCATGCATGACGAAAACAGAGCAAGTTGAAACAGAGTACGTTCTTGGAGTAAAGGAGAAGAAAGTTCATGAATGTCCGATCTGTTTTAGGGTTTTTACTTCAGGGCAAGCACTTGGAGGTCATAAGAGATCTCACGGAAGTAACATCGGAGCAGGAAGAGGATTGTCAGTAAGTCAAATTGTCCAAATCGAAGAAGAAGTATCAGTGAAACAGAGGATGATTGATCTTAATCTTCCTGCACCTAATGAAGAAGATGAAACTTCTTTGGTGTTTGATGAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

314

Amino Acids

35.85

Weight (kDa)

5.21

Isoelectric Point (pI)

60.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	193 - 218	1.3e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	242 - 265	1.2e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45120 AT3G60580
fragaria_vesca	FvH4_7g10990
malus_domestica	MD01G1182000.v1.1 MD02G1214100.v1.1 MD07G1114000.v1.1 MD07G1252200.v1.1
prunus_persica	Prupe.2G136700_v2.0.a1 Prupe.2G275700_v2.0.a1
pyrus_communis	pycom01g19180 pycom07g09900 pycom07g22460 pycom12659g00040
rosa_chinensis	RchiOBHm_Chr1g0348921
rosa_laevigata	RLG00000028616
rosa_multiflora	Rmu_sc0000106.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306520
rosa_rugosa	Rorug01G0198500.1
rosa_samantha	Rh1AG216000 Rh1BG182100 Rh1CG200300 Rh1DG212000
rosa_wichuraiana	Rw1G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	100
AclWI	GGATC	1 cut(s)	352
AcoI	YGGCCR	2 cut(s)	143, 399
AcuI	CTGAAG	2 cut(s)	282, 744
AfaI	GTAC	1 cut(s)	698
AflIII	ACRYGT	1 cut(s)	514
AgsI	TTSAA	4 cut(s)	31, 278, 583, 689
AjnI	CCWGG	1 cut(s)	296
AluBI	AGCT	5 cut(s)	36, 53, 370, 420, 425
AluI	AGCT	5 cut(s)	36, 53, 370, 420, 425
Alw26I	GTCTC	4 cut(s)	467, 474, 524, 584
AlwI	GGATC	1 cut(s)	352
AlwNI	CAGNNNCTG	1 cut(s)	428
AoxI	GGCC	2 cut(s)	143, 399
AsuHPI	GGTGA	2 cut(s)	128, 215
BaeI	ACNNNNGTAYC	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	270
BceAI	ACGGC	1 cut(s)	158
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BciT130I	CCWGG	1 cut(s)	298
BcoDI	GTCTC	4 cut(s)	467, 474, 524, 584
BfmI	CTRYAG	1 cut(s)	93
BglII	AGATCT	3 cut(s)	71, 448, 788
BlpI	GCTNAGC	1 cut(s)	421
Bme1390I	CCNGG	1 cut(s)	298
BmrFI	CCNGG	1 cut(s)	298
BmrI	ACTGGG	1 cut(s)	381
BmsI	GCATC	2 cut(s)	175, 421
BmuI	ACTGGG	1 cut(s)	381
BpiI	GAAGAC	1 cut(s)	270
Bpu1102I	GCTNAGC	1 cut(s)	421
BsaBI	GATNNNNATC	1 cut(s)	888
Bse1I	ACTGG	2 cut(s)	118, 387
Bse8I	GATNNNNATC	1 cut(s)	888
BseBI	CCWGG	1 cut(s)	298
BseGI	GGATG	1 cut(s)	882
BseJI	GATNNNNATC	1 cut(s)	888
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	2 cut(s)	118, 387
BseX3I	CGGCCG	1 cut(s)	143
BsgI	GTGCAG	1 cut(s)	882
Bsh1285I	CGRYCG	1 cut(s)	146
BshFI	GGCC	2 cut(s)	145, 401
BsiEI	CGRYCG	1 cut(s)	146
BsmAI	GTCTC	4 cut(s)	467, 474, 524, 584
BsnI	GGCC	2 cut(s)	145, 401
Bsp143I	GATC	8 cut(s)	71, 320, 344, 448, 535, 738, 788, 883
Bsp1720I	GCTNAGC	1 cut(s)	421
BspANI	GGCC	2 cut(s)	145, 401
BspCNI	CTCAG	1 cut(s)	434
BspHI	TCATGA	2 cut(s)	538, 727
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	1 cut(s)	352
BspQI	GCTCTTC	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	118, 387
BssMI	GATC	8 cut(s)	71, 320, 344, 448, 535, 738, 788, 883
Bst2UI	CCWGG	1 cut(s)	298
Bst4CI	ACNGT	1 cut(s)	545
Bst6I	CTCTTC	2 cut(s)	43, 811
BstC8I	GCNNGC	3 cut(s)	643, 664, 768
BstDEI	CTNAG	1 cut(s)	421
BstF5I	GGATG	1 cut(s)	882
BstKTI	GATC	8 cut(s)	74, 323, 347, 451, 538, 741, 791, 886
BstMAI	GTCTC	4 cut(s)	467, 474, 524, 584
BstMBI	GATC	8 cut(s)	71, 320, 344, 448, 535, 738, 788, 883
BstMCI	CGRYCG	1 cut(s)	146
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	298
BstNSI	RCATGY	2 cut(s)	82, 666
BstSCI	CCNGG	1 cut(s)	296
BstSFI	CTRYAG	1 cut(s)	93
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	3 cut(s)	71, 448, 788
BstYI	RGATCY	3 cut(s)	71, 448, 788
BstZI	CGGCCG	1 cut(s)	143
BsuRI	GGCC	2 cut(s)	145, 401
BtsCI	GGATG	1 cut(s)	882
BtsIMutI	CAGTG	3 cut(s)	394, 550, 870
Cac8I	GCNNGC	3 cut(s)	643, 664, 768
CaiI	CAGNNNCTG	1 cut(s)	428
CciI	TCATGA	2 cut(s)	538, 727
Csp6I	GTAC	1 cut(s)	697
CviAII	CATG	6 cut(s)	67, 79, 539, 663, 667, 728
CviQI	GTAC	1 cut(s)	697
DdeI	CTNAG	1 cut(s)	421
DpnI	GATC	8 cut(s)	73, 322, 346, 450, 537, 740, 790, 885
DpnII	GATC	8 cut(s)	71, 320, 344, 448, 535, 738, 788, 883
DraI	TTTAAA	1 cut(s)	610
EaeI	YGGCCR	2 cut(s)	143, 399
EagI	CGGCCG	1 cut(s)	143
Eam1104I	CTCTTC	2 cut(s)	43, 811
EarI	CTCTTC	2 cut(s)	43, 811
EclXI	CGGCCG	1 cut(s)	143
Eco52I	CGGCCG	1 cut(s)	143
Eco57I	CTGAAG	2 cut(s)	282, 744
EcoRII	CCWGG	1 cut(s)	296
EcoT22I	ATGCAT	1 cut(s)	668
FaeI	CATG	6 cut(s)	70, 82, 542, 666, 670, 731
FaiI	YATR	8 cut(s)	68, 80, 470, 540, 664, 668, 729, 783
FatI	CATG	6 cut(s)	66, 78, 538, 662, 666, 727
FokI	GGATG	1 cut(s)	889
HaeIII	GGCC	2 cut(s)	145, 401
Hin1II	CATG	6 cut(s)	70, 82, 542, 666, 670, 731
HincII	GTYRAC	1 cut(s)	152
HindII	GTYRAC	1 cut(s)	152
HinfI	GANTC	5 cut(s)	148, 179, 226, 290, 579
HphI	GGTGA	2 cut(s)	128, 215
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	5 cut(s)	184, 336, 430, 738, 809
Hpy188III	TCNNGA	5 cut(s)	31, 233, 477, 539, 728
Hpy8I	GTNNAC	1 cut(s)	152
Hpy99I	CGWCG	6 cut(s)	167, 170, 173, 272, 275, 321
HpyCH4III	ACNGT	1 cut(s)	545
HpyCH4IV	ACGT	4 cut(s)	100, 273, 514, 699
HpyCH4V	TGCA	3 cut(s)	95, 666, 899
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	1 cut(s)	421
HpySE526I	ACGT	4 cut(s)	100, 273, 514, 699
Hsp92II	CATG	6 cut(s)	70, 82, 542, 666, 670, 731
Kzo9I	GATC	8 cut(s)	71, 320, 344, 448, 535, 738, 788, 883
LguI	GCTCTTC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	809
LweI	GCATC	2 cut(s)	175, 421
MaeII	ACGT	4 cut(s)	100, 273, 514, 699
MaeIII	GTNAC	3 cut(s)	62, 158, 800
MalI	GATC	8 cut(s)	73, 322, 346, 450, 537, 740, 790, 885
MboI	GATC	8 cut(s)	71, 320, 344, 448, 535, 738, 788, 883
MflI	RGATCY	3 cut(s)	71, 448, 788
MluCI	AATT	2 cut(s)	242, 837
MlyI	GAGTC	3 cut(s)	157, 188, 299
MnlI	CCTC	7 cut(s)	130, 436, 566, 623, 770, 812, 867
Mph1103I	ATGCAT	1 cut(s)	668
MseI	TTAA	3 cut(s)	303, 609, 888
MslI	CAYNNNNRTG	1 cut(s)	543
MspR9I	CCNGG	1 cut(s)	298
MvaI	CCWGG	1 cut(s)	298
MwoI	GCNNNNNNNGC	1 cut(s)	33
NdeII	GATC	8 cut(s)	71, 320, 344, 448, 535, 738, 788, 883
NlaIII	CATG	6 cut(s)	70, 82, 542, 666, 670, 731
NmeAIII	GCCGAG	3 cut(s)	171, 292, 427
NmuCI	GTSAC	2 cut(s)	62, 158
NsiI	ATGCAT	1 cut(s)	668
NspI	RCATGY	2 cut(s)	82, 666
PaeI	GCATGC	1 cut(s)	666
PagI	TCATGA	2 cut(s)	538, 727
PciSI	GCTCTTC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	4 cut(s)	168, 174, 264, 325
PfeI	GAWTC	2 cut(s)	226, 579
PfoI	TCCNGGA	1 cut(s)	296
PleI	GAGTC	3 cut(s)	156, 187, 298
PpsI	GAGTC	3 cut(s)	156, 187, 298
Psp1406I	AACGTT	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	296
PstI	CTGCAG	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	428
PsuI	RGATCY	3 cut(s)	71, 448, 788
RsaI	GTAC	1 cut(s)	698
RsaNI	GTAC	1 cut(s)	697
RseI	CAYNNNNRTG	1 cut(s)	543
SapI	GCTCTTC	1 cut(s)	43
SaqAI	TTAA	3 cut(s)	303, 609, 888
Sau3AI	GATC	8 cut(s)	71, 320, 344, 448, 535, 738, 788, 883
SchI	GAGTC	3 cut(s)	157, 188, 299
ScrFI	CCNGG	1 cut(s)	298
SfaNI	GCATC	2 cut(s)	175, 421
SfcI	CTRYAG	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	543
SphI	GCATGC	1 cut(s)	666
Sse9I	AATT	2 cut(s)	242, 837
StyD4I	CCNGG	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	545
TaiI	ACGT	4 cut(s)	103, 276, 517, 702
TaqI	TCGA	2 cut(s)	357, 849
TasI	AATT	2 cut(s)	242, 837
TfiI	GAWTC	2 cut(s)	226, 579
Tru1I	TTAA	3 cut(s)	303, 609, 888
Tru9I	TTAA	3 cut(s)	303, 609, 888
TscAI	CASTG	3 cut(s)	394, 550, 870
TseFI	GTSAC	2 cut(s)	62, 158
Tsp45I	GTSAC	2 cut(s)	62, 158
TspDTI	ATGAA	7 cut(s)	28, 239, 255, 716, 744, 921, 930
TspGWI	ACGGA	2 cut(s)	455, 810
TspRI	CASTG	3 cut(s)	394, 550, 870
XceI	RCATGY	2 cut(s)	82, 666
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
Zsp2I	ATGCAT	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.