Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008314

Physical Location & Seq

Genomic Coordinates Forward (+)

22393823 .. 22395244

Gene Structure 1422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAGAGTTACAAGTGCAGGGTTTGCTTTAAGAGCTTCGTTAACGGAAAAGCTTTAGGTGGTCACATGAGATCTCACATGAGTAATTCACATGAGGAAGAACAAAGGCCGAGTCAACTCAGTTATGAGACTGAGTCCGATGTTTCTTCGTCTGATCCGAAGTTTGCTTTTACGAGCTCTGTTCTTCTTGAAGACGGTGAAAGCGAGAGCGAGTCGTCGAGGAATGTTATTAACCTGACTCGGAAACGATCCAAGCGAACTCGGAAACTCGATTCGTTTGTAACCAAGAAGGTGAAAACGAGTCAACTCGGATACAAGCCTGAGTCTGATCAAGAGCCTCCTCATAGCTCAGCTTCTGATACAACGACGGAGGAAGATCTTGCCTTTTGTCTCATGATGCTCTCTCGAGATAAATGGAAGAAGAACAAAAGTAATAAAGAAGTAGTGGAAGAGATCGAGACAGAAGAAGAATCAGAAGGTTACAACAAGATTAATCGAGCAACAACGAAAGGAAGATACAAGTGTGAGACCTGCGGGAAAGTGTTCAAATCTTATCAAGCATTAGGTGGGCATAGAGCAAGTCATAAGAAGAACAGAGTAAGTAACAACAAAACAGAGCAACGAAGCGAAACAGAGTATGATAATGTTGTTGTTGTTGCTAAGAGAATCCATGAATGTCCGATTTGTCTAAGAGTTTTCGCATCGGGACAAGCACTTGGAGGTCACAAAAGATCTCACGGGGTAGGGAATTTATCTGTGAATCAACAACGTCGAGTTCATAGAAACGAGTCTGTGAAACAGAGGATGATAGATCTTAATCTTCCTGCACCAACCGAAGAAGACGAAGTCTCTGTGGTGTTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

288

Amino Acids

32.73

Weight (kDa)

8.83

Isoelectric Point (pI)

68.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	4 - 28	7.5e-08	C2H2-type zinc finger
zf-C2H2_6	PF13912	172 - 197	1.1e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	224 - 246	1.4e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45120 AT3G60580
fragaria_vesca	FvH4_7g10990
malus_domestica	MD01G1182000.v1.1 MD02G1214100.v1.1 MD07G1114000.v1.1 MD07G1252200.v1.1
prunus_persica	Prupe.2G136700_v2.0.a1 Prupe.2G275700_v2.0.a1
pyrus_communis	pycom01g19180 pycom07g09900 pycom07g22460 pycom12659g00040
rosa_chinensis	RchiOBHm_Chr1g0348921
rosa_laevigata	RLG00000028616
rosa_multiflora	Rmu_sc0000106.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306520
rosa_rugosa	Rorug01G0198500.1
rosa_samantha	Rh1AG216000 Rh1BG182100 Rh1CG200300 Rh1DG212000
rosa_wichuraiana	Rw1G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	539
AciI	CCGC	1 cut(s)	534
AclWI	GGATC	2 cut(s)	149, 243
AcsI	RAATTY	1 cut(s)	748
AgsI	TTSAA	3 cut(s)	191, 547, 863
AluBI	AGCT	5 cut(s)	36, 53, 177, 348, 353
AluI	AGCT	5 cut(s)	36, 53, 177, 348, 353
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	5 cut(s)	122, 395, 452, 521, 853
AlwI	GGATC	2 cut(s)	149, 243
AlwNI	CAGNNNCTG	1 cut(s)	356
Ama87I	CYCGRG	1 cut(s)	405
AoxI	GGCC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	748
ArsI	GACNNNNNNTTYG	2 cut(s)	97, 129
AseI	ATTAAT	1 cut(s)	492
Asp700I	GAANNNNTTC	1 cut(s)	542
AsuHPI	GGTGA	2 cut(s)	209, 304
AvaI	CYCGRG	1 cut(s)	405
BaeI	ACNNNNGTAYC	2 cut(s)	508, 541
BanII	GRGCYC	1 cut(s)	179
BbsI	GAAGAC	2 cut(s)	198, 846
Bbv12I	GWGCWC	1 cut(s)	179
BciVI	GTATCC	1 cut(s)	305
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	5 cut(s)	122, 395, 452, 521, 853
BfuAI	ACCTGC	1 cut(s)	539
BfuI	GTATCC	1 cut(s)	305
BglII	AGATCT	4 cut(s)	71, 376, 731, 811
BlpI	GCTNAGC	1 cut(s)	349
BmeT110I	CYCGRG	1 cut(s)	405
BmsI	GCATC	2 cut(s)	387, 710
BpiI	GAAGAC	2 cut(s)	198, 846
Bpu1102I	GCTNAGC	1 cut(s)	349
BsaBI	GATNNNNATC	1 cut(s)	816
BsaI	GGTCTC	1 cut(s)	521
Bse8I	GATNNNNATC	1 cut(s)	816
BseGI	GGATG	1 cut(s)	810
BseJI	GATNNNNATC	1 cut(s)	816
BseMII	CTCAG	4 cut(s)	123, 133, 312, 363
BseRI	GAGGAG	1 cut(s)	330
BsgI	GTGCAG	2 cut(s)	37, 810
BshFI	GGCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	405
BslFI	GGGAC	1 cut(s)	720
BsmAI	GTCTC	5 cut(s)	122, 395, 452, 521, 853
BsmFI	GGGAC	1 cut(s)	720
BsnI	GGCC	1 cut(s)	109
Bso31I	GGTCTC	1 cut(s)	521
BsoBI	CYCGRG	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	8 cut(s)	71, 154, 248, 328, 376, 453, 731, 811
Bsp1720I	GCTNAGC	1 cut(s)	349
BspACI	CCGC	1 cut(s)	534
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	4 cut(s)	124, 132, 313, 362
BspHI	TCATGA	1 cut(s)	393
BspMI	ACCTGC	1 cut(s)	539
BspPI	GGATC	2 cut(s)	149, 243
BspTNI	GGTCTC	1 cut(s)	521
BssMI	GATC	8 cut(s)	71, 154, 248, 328, 376, 453, 731, 811
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	1 cut(s)	444
BstAPI	GCANNNNNTGC	1 cut(s)	24
BstDEI	CTNAG	6 cut(s)	119, 132, 321, 349, 660, 689
BstF5I	GGATG	1 cut(s)	810
BstKTI	GATC	8 cut(s)	74, 157, 251, 331, 379, 456, 734, 814
BstMAI	GTCTC	5 cut(s)	122, 395, 452, 521, 853
BstMBI	GATC	8 cut(s)	71, 154, 248, 328, 376, 453, 731, 811
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 33
BstV2I	GAAGAC	2 cut(s)	198, 846
BstX2I	RGATCY	4 cut(s)	71, 376, 731, 811
BstYI	RGATCY	4 cut(s)	71, 376, 731, 811
BsuI	GTATCC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	810
BveI	ACCTGC	1 cut(s)	539
CaiI	CAGNNNCTG	1 cut(s)	356
CciI	TCATGA	1 cut(s)	393
CviAII	CATG	5 cut(s)	67, 79, 92, 394, 671
CviJI	RGCY	8 cut(s)	36, 53, 109, 177, 319, 337, 348, 353
CviKI_1	RGCY	8 cut(s)	36, 53, 109, 177, 319, 337, 348, 353
DdeI	CTNAG	6 cut(s)	119, 132, 321, 349, 660, 689
DpnI	GATC	8 cut(s)	73, 156, 250, 330, 378, 455, 733, 813
DpnII	GATC	8 cut(s)	71, 154, 248, 328, 376, 453, 731, 811
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
Ecl136II	GAGCTC	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	179
Eco31I	GGTCTC	1 cut(s)	521
Eco53kI	GAGCTC	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	405
EcoICRI	GAGCTC	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	179
FaeI	CATG	5 cut(s)	70, 82, 95, 397, 674
FaqI	GGGAC	1 cut(s)	720
FatI	CATG	5 cut(s)	66, 78, 91, 393, 670
FauI	CCCGC	1 cut(s)	527
FbaI	TGATCA	1 cut(s)	328
FokI	GGATG	1 cut(s)	817
FriOI	GRGCYC	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	109
Hin1II	CATG	5 cut(s)	70, 82, 95, 397, 674
HincII	GTYRAC	3 cut(s)	43, 116, 305
HindII	GTYRAC	3 cut(s)	43, 116, 305
HindIII	AAGCTT	1 cut(s)	51
HpaI	GTTAAC	1 cut(s)	43
HphI	GGTGA	2 cut(s)	209, 304
Hpy166II	GTNNAC	3 cut(s)	43, 116, 305
Hpy188III	TCNNGA	7 cut(s)	188, 332, 394, 405, 407, 457, 705
Hpy8I	GTNNAC	3 cut(s)	43, 116, 305
Hpy99I	CGWCG	3 cut(s)	220, 370, 774
HpyAV	CCTTC	2 cut(s)	283, 470
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	1 cut(s)	769
HpyCH4V	TGCA	2 cut(s)	18, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 33
HpyF3I	CTNAG	6 cut(s)	119, 132, 321, 349, 660, 689
HpySE526I	ACGT	1 cut(s)	769
Hsp92II	CATG	5 cut(s)	70, 82, 95, 397, 674
Ksp22I	TGATCA	1 cut(s)	328
KspAI	GTTAAC	1 cut(s)	43
Kzo9I	GATC	8 cut(s)	71, 154, 248, 328, 376, 453, 731, 811
LpnPI	CCDG	5 cut(s)	4, 248, 333, 544, 837
LweI	GCATC	2 cut(s)	387, 710
MaeII	ACGT	1 cut(s)	769
MaeIII	GTNAC	6 cut(s)	8, 62, 280, 479, 602, 722
MalI	GATC	8 cut(s)	73, 156, 250, 330, 378, 455, 733, 813
MboI	GATC	8 cut(s)	71, 154, 248, 328, 376, 453, 731, 811
MflI	RGATCY	4 cut(s)	71, 376, 731, 811
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	2 cut(s)	85, 748
MlyI	GAGTC	7 cut(s)	121, 143, 221, 232, 310, 332, 797
MnlI	CCTC	7 cut(s)	88, 213, 348, 351, 364, 713, 795
MroXI	GAANNNNTTC	1 cut(s)	542
MseI	TTAA	5 cut(s)	30, 42, 231, 492, 816
MwoI	GCNNNNNNNGC	2 cut(s)	24, 33
NdeII	GATC	8 cut(s)	71, 154, 248, 328, 376, 453, 731, 811
NlaIII	CATG	5 cut(s)	70, 82, 95, 397, 674
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	2 cut(s)	62, 722
PaeR7I	CTCGAG	1 cut(s)	405
PagI	TCATGA	1 cut(s)	393
PcsI	WCGNNNNNNNCGW	3 cut(s)	155, 201, 253
PdmI	GAANNNNTTC	1 cut(s)	542
PfeI	GAWTC	4 cut(s)	272, 470, 666, 760
PflFI	GACNNNGTC	2 cut(s)	133, 845
PleI	GAGTC	7 cut(s)	120, 142, 220, 232, 309, 331, 796
PpsI	GAGTC	7 cut(s)	120, 142, 220, 232, 309, 331, 796
PshBI	ATTAAT	1 cut(s)	492
Psp124BI	GAGCTC	1 cut(s)	179
PstNI	CAGNNNCTG	1 cut(s)	356
PsuI	RGATCY	4 cut(s)	71, 376, 731, 811
PsyI	GACNNNGTC	2 cut(s)	133, 845
SacI	GAGCTC	1 cut(s)	179
SaqAI	TTAA	5 cut(s)	30, 42, 231, 492, 816
Sau3AI	GATC	8 cut(s)	71, 154, 248, 328, 376, 453, 731, 811
SchI	GAGTC	7 cut(s)	121, 143, 221, 232, 310, 332, 797
SduI	GDGCHC	1 cut(s)	179
SfaNI	GCATC	2 cut(s)	387, 710
Sfr274I	CTCGAG	1 cut(s)	405
SlaI	CTCGAG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
Sse9I	AATT	2 cut(s)	85, 748
SsiI	CCGC	1 cut(s)	534
SstI	GAGCTC	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	1 cut(s)	772
TaqI	TCGA	6 cut(s)	218, 270, 406, 456, 496, 772
TasI	AATT	2 cut(s)	85, 748
TfiI	GAWTC	4 cut(s)	272, 470, 666, 760
Tru1I	TTAA	5 cut(s)	30, 42, 231, 492, 816
Tru9I	TTAA	5 cut(s)	30, 42, 231, 492, 816
TseFI	GTSAC	2 cut(s)	62, 722
Tsp45I	GTSAC	2 cut(s)	62, 722
TspDTI	ATGAA	2 cut(s)	687, 767
TspGWI	ACGGA	2 cut(s)	60, 383
Tth111I	GACNNNGTC	2 cut(s)	133, 845
VspI	ATTAAT	1 cut(s)	492
XapI	RAATTY	1 cut(s)	748
XhoI	CTCGAG	1 cut(s)	405
XmnI	GAANNNNTTC	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.