Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008314

Physical Location & Seq

Genomic Coordinates Reverse (-)

27755081 .. 27756034

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G275700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAAAAGCATAGAATCTGCAAGATCTGCAACAAGAGATTCGCCAATGGAAAAGCCATGGGTGGTCACATGAGATCTCATCTGGCCAAGCTTCCTCTCCCTGCAAAGCCGCAGTCGCCGCAGCAGCAACAACAACTCAGCAACTCGCCCGAGTCATCTCCTCCACTTTCATCAACAAACAGGGCCATGCATTCTTCTCCATCTCTGGATTCAGCCATCCATGACGGCGATAGCGACACCGAGTCACACCCGAGGAACCCAACTCGGAGAAGATCCAAACGGCGCCGTAAAGTGATTGGGAAAGCGGCTGAGGCGGCCCTTGAGGCAGAGCAGGTGAGTTCTGTTTCTGATGCTTTTTCAACTGAAGATGTTGCCAGGTGTCTCATAATGCTTTCAATGGATAAATGGGGAAAATGGGAAAAAGCTAAACTAAAAAAACAAGTAGATGAATCTGTAGATGAGGATGAGGACGAGGACGAGGACGAGTCGGCTTTTCAGGCTCAAACCGGAGCCCTGACTCAGGGAAAGTACAAGTGTGAGACTTGTAACAAAGCGTTTCGATCTTATCAGGCACTTGGAGGCCACAGAGCAAGTCACAAGAAAATAATCAAGACCCAAGTGTTCGATGTTGAAGATGATGATGATGATGATTTTGAAGAAGAAGAAGAAGAAGATGATGATGTCATTGGTAACAATGGCAATAGTGGTAATTTGGTTGTTGATCAGCAGAGAACATTTGAGTGTTCATTTTGTTTCAAACAGTTTGATTCTGGTCAAGCACTTGGTGGGCACAAGAAAGTTCACTATTACAACAATTTGACTCACAATGCTAGGAATGTGTCATCATCTTCTACTAATTTTGTAGACAATTTGGTGATAGATCTCAATCTCCCAGCACCAGAGGAGGAAGATGGAGAGCTTAGCCAGCTTGAGTTTTCAACAGTTTCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

318

Amino Acids

35.41

Weight (kDa)

5.12

Isoelectric Point (pI)

64.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45120 AT3G60580
fragaria_vesca	FvH4_7g10990
malus_domestica	MD01G1182000.v1.1 MD02G1214100.v1.1 MD07G1114000.v1.1 MD07G1252200.v1.1
prunus_persica	Prupe.2G136700_v2.0.a1 Prupe.2G275700_v2.0.a1
pyrus_communis	pycom01g19180 pycom07g09900 pycom07g22460 pycom12659g00040
rosa_chinensis	RchiOBHm_Chr1g0348921
rosa_laevigata	RLG00000028616
rosa_multiflora	Rmu_sc0000106.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306520
rosa_rugosa	Rorug01G0198500.1
rosa_samantha	Rh1AG216000 Rh1BG182100 Rh1CG200300 Rh1DG212000
rosa_wichuraiana	Rw1G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	322
Acc36I	ACCTGC	1 cut(s)	322
AccB1I	GGYRCC	1 cut(s)	282
AccI	GTMKAC	1 cut(s)	864
AciI	CCGC	4 cut(s)	110, 119, 305, 314
AclWI	GGATC	1 cut(s)	267
AcoI	YGGCCR	1 cut(s)	84
AcuI	CTGAAG	1 cut(s)	384
AcyI	GRCGYC	1 cut(s)	283
AdeI	CACNNNGTG	1 cut(s)	785
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	1 cut(s)	520
AgsI	TTSAA	6 cut(s)	360, 396, 632, 656, 757, 939
AhdI	GACNNNNNGTC	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	374
AluBI	AGCT	4 cut(s)	91, 425, 919, 928
AluI	AGCT	4 cut(s)	91, 425, 919, 928
Alw26I	GTCTC	2 cut(s)	386, 533
AlwI	GGATC	1 cut(s)	267
AlwNI	CAGNNNCTG	1 cut(s)	947
Ama87I	CYCGRG	2 cut(s)	149, 250
AoxI	GGCC	4 cut(s)	84, 183, 315, 580
ApeKI	GCWGC	2 cut(s)	121, 124
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	2 cut(s)	183, 316
AsuHPI	GGTGA	2 cut(s)	346, 886
AvaI	CYCGRG	2 cut(s)	149, 250
BaeGI	GKGCMC	1 cut(s)	792
BalI	TGGCCA	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	282
BanII	GRGCYC	1 cut(s)	514
BbvCI	CCTCAGC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	133, 136
BccI	CCATC	3 cut(s)	208, 224, 905
BceAI	ACGGC	3 cut(s)	241, 270, 296
BciT130I	CCWGG	1 cut(s)	376
BclI	TGATCA	1 cut(s)	721
BcoDI	GTCTC	2 cut(s)	386, 533
BfaI	CTAG	1 cut(s)	831
BfmI	CTRYAG	1 cut(s)	453
BfoI	RGCGCY	1 cut(s)	286
BfuAI	ACCTGC	1 cut(s)	322
BglI	GCCNNNNNGGC	1 cut(s)	323
BglII	AGATCT	3 cut(s)	24, 74, 880
BisI	GCNGC	6 cut(s)	110, 119, 122, 125, 306, 315
BlpI	GCTNAGC	1 cut(s)	920
BlsI	GCNGC	6 cut(s)	111, 120, 123, 126, 307, 316
Bme1390I	CCNGG	1 cut(s)	376
BmeRI	GACNNNNNGTC	1 cut(s)	241
BmeT110I	CYCGRG	2 cut(s)	149, 250
BmgT120I	GGNCC	2 cut(s)	183, 316
BmiI	GGNNCC	3 cut(s)	257, 284, 511
BmrFI	CCNGG	1 cut(s)	376
BmsI	GCATC	1 cut(s)	340
Bpu10I	CCTNAGC	1 cut(s)	309
Bpu1102I	GCTNAGC	1 cut(s)	920
BpuEI	CTTGAG	2 cut(s)	341, 950
BsaBI	GATNNNNATC	1 cut(s)	885
BsaHI	GRCGYC	1 cut(s)	283
BsaJI	CCNNGG	2 cut(s)	57, 251
BsaWI	WCCGGW	1 cut(s)	506
Bsc4I	CCNNNNNNNGG	1 cut(s)	520
Bse8I	GATNNNNATC	1 cut(s)	885
BseBI	CCWGG	1 cut(s)	376
BseDI	CCNNGG	2 cut(s)	57, 251
BseGI	GGATG	2 cut(s)	216, 469
BseJI	GATNNNNATC	1 cut(s)	885
BseLI	CCNNNNNNNGG	1 cut(s)	520
BseMII	CTCAG	3 cut(s)	151, 300, 533
BseRI	GAGGAG	2 cut(s)	150, 917
BseSI	GKGCMC	1 cut(s)	792
BseXI	GCAGC	2 cut(s)	133, 136
BseYI	CCCAGC	1 cut(s)	892
BshFI	GGCC	4 cut(s)	86, 185, 317, 582
BshNI	GGYRCC	1 cut(s)	282
BsiHKCI	CYCGRG	2 cut(s)	149, 250
BsiSI	CCGG	1 cut(s)	507
BslI	CCNNNNNNNGG	1 cut(s)	520
BsmAI	GTCTC	2 cut(s)	386, 533
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	4 cut(s)	86, 185, 317, 582
BsoBI	CYCGRG	2 cut(s)	149, 250
Bsp1286I	GDGCHC	2 cut(s)	514, 792
Bsp143I	GATC	6 cut(s)	24, 74, 272, 560, 721, 880
Bsp1720I	GCTNAGC	1 cut(s)	920
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	4 cut(s)	110, 119, 305, 314
BspANI	GGCC	4 cut(s)	86, 185, 317, 582
BspCNI	CTCAG	3 cut(s)	150, 301, 532
BspLI	GGNNCC	3 cut(s)	257, 284, 511
BspMI	ACCTGC	1 cut(s)	322
BspPI	GGATC	1 cut(s)	267
BspT107I	GGYRCC	1 cut(s)	282
BssECI	CCNNGG	2 cut(s)	57, 251
BssMI	GATC	6 cut(s)	24, 74, 272, 560, 721, 880
BssNI	GRCGYC	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	376
Bst4CI	ACNGT	2 cut(s)	762, 943
BstACI	GRCGYC	1 cut(s)	283
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	926
BstDEI	CTNAG	4 cut(s)	137, 309, 519, 920
BstDSI	CCRYGG	1 cut(s)	57
BstENI	CCTNNNNNAGG	1 cut(s)	518
BstF5I	GGATG	2 cut(s)	216, 469
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	6 cut(s)	27, 77, 275, 563, 724, 883
BstMAI	GTCTC	2 cut(s)	386, 533
BstMBI	GATC	6 cut(s)	24, 74, 272, 560, 721, 880
BstMWI	GCNNNNNNNGC	9 cut(s)	27, 115, 118, 124, 311, 314, 323, 497, 925
BstNI	CCWGG	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	374
BstSFI	CTRYAG	1 cut(s)	453
BstSLI	GKGCMC	1 cut(s)	792
BstV1I	GCAGC	2 cut(s)	133, 136
BstX2I	RGATCY	4 cut(s)	24, 74, 272, 880
BstYI	RGATCY	4 cut(s)	24, 74, 272, 880
BsuRI	GGCC	4 cut(s)	86, 185, 317, 582
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	216, 469
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	926
CaiI	CAGNNNCTG	1 cut(s)	947
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	2 cut(s)	183, 316
Csp6I	GTAC	1 cut(s)	529
CviAII	CATG	4 cut(s)	58, 70, 187, 221
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	4 cut(s)	137, 309, 519, 920
DinI	GGCGCC	1 cut(s)	284
DpnI	GATC	6 cut(s)	26, 76, 274, 562, 723, 882
DpnII	GATC	6 cut(s)	24, 74, 272, 560, 721, 880
DraIII	CACNNNGTG	1 cut(s)	785
DriI	GACNNNNNGTC	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	84
Eam1105I	GACNNNNNGTC	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	514
Eco57I	CTGAAG	1 cut(s)	384
Eco88I	CYCGRG	2 cut(s)	149, 250
EcoNI	CCTNNNNNAGG	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	374
EcoT14I	CCWWGG	1 cut(s)	57
EcoT22I	ATGCAT	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	514
EgeI	GGCGCC	1 cut(s)	284
EheI	GGCGCC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	4 cut(s)	61, 73, 190, 224
FaiI	YATR	6 cut(s)	12, 59, 71, 188, 222, 386
FatI	CATG	4 cut(s)	57, 69, 186, 220
FbaI	TGATCA	1 cut(s)	721
FblI	GTMKAC	1 cut(s)	864
Fnu4HI	GCNGC	6 cut(s)	110, 119, 122, 125, 306, 315
FokI	GGATG	2 cut(s)	203, 476
FriOI	GRGCYC	1 cut(s)	514
Fsp4HI	GCNGC	6 cut(s)	110, 119, 122, 125, 306, 315
FspBI	CTAG	1 cut(s)	831
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	6 cut(s)	110, 119, 122, 125, 306, 315
GsaI	CCCAGC	1 cut(s)	896
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	4 cut(s)	86, 185, 317, 582
HapII	CCGG	1 cut(s)	507
HhaI	GCGC	1 cut(s)	285
Hin1I	GRCGYC	1 cut(s)	283
Hin1II	CATG	4 cut(s)	61, 73, 190, 224
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	89
HpaII	CCGG	1 cut(s)	507
HphI	GGTGA	2 cut(s)	346, 886
Hpy166II	GTNNAC	2 cut(s)	802, 865
Hpy188I	TCNGA	3 cut(s)	267, 349, 949
Hpy188III	TCNNGA	2 cut(s)	206, 610
Hpy8I	GTNNAC	2 cut(s)	802, 865
HpyCH4III	ACNGT	2 cut(s)	762, 943
HpyCH4V	TGCA	4 cut(s)	21, 30, 104, 190
HpyF10VI	GCNNNNNNNGC	9 cut(s)	27, 115, 118, 124, 311, 314, 323, 497, 925
HpyF3I	CTNAG	4 cut(s)	137, 309, 519, 920
Hsp92I	GRCGYC	1 cut(s)	283
Hsp92II	CATG	4 cut(s)	61, 73, 190, 224
HspAI	GCGC	1 cut(s)	283
KasI	GGCGCC	1 cut(s)	282
Ksp22I	TGATCA	1 cut(s)	721
Kzo9I	GATC	6 cut(s)	24, 74, 272, 560, 721, 880
LmnI	GCTCC	1 cut(s)	509
Lsp1109I	GCAGC	2 cut(s)	133, 136
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	1 cut(s)	831
MaeIII	GTNAC	5 cut(s)	65, 243, 545, 593, 689
MalI	GATC	6 cut(s)	26, 76, 274, 562, 723, 882
MboI	GATC	6 cut(s)	24, 74, 272, 560, 721, 880
MflI	RGATCY	4 cut(s)	24, 74, 272, 880
MhlI	GDGCHC	2 cut(s)	514, 792
MlsI	TGGCCA	1 cut(s)	86
MluCI	AATT	4 cut(s)	709, 814, 856, 868
MluNI	TGGCCA	1 cut(s)	86
Mly113I	GGCGCC	1 cut(s)	283
MlyI	GAGTC	5 cut(s)	161, 251, 494, 511, 814
Mox20I	TGGCCA	1 cut(s)	86
Mph1103I	ATGCAT	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	739
Msp20I	TGGCCA	1 cut(s)	86
MspI	CCGG	1 cut(s)	507
MspR9I	CCNGG	1 cut(s)	376
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	376
MwoI	GCNNNNNNNGC	9 cut(s)	27, 115, 118, 124, 311, 314, 323, 497, 925
NarI	GGCGCC	1 cut(s)	283
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	6 cut(s)	24, 74, 272, 560, 721, 880
NlaIII	CATG	4 cut(s)	61, 73, 190, 224
NlaIV	GGNNCC	3 cut(s)	257, 284, 511
NmuCI	GTSAC	3 cut(s)	65, 243, 593
NsiI	ATGCAT	1 cut(s)	192
PaqCI	CACCTGC	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PctI	GAATGC	1 cut(s)	190
PfeI	GAWTC	5 cut(s)	15, 39, 209, 449, 767
PkrI	GCNGC	6 cut(s)	111, 120, 123, 126, 307, 316
PleI	GAGTC	5 cut(s)	160, 250, 493, 511, 814
PluTI	GGCGCC	1 cut(s)	286
PpsI	GAGTC	5 cut(s)	160, 250, 493, 511, 814
Psp6I	CCWGG	1 cut(s)	374
PspFI	CCCAGC	1 cut(s)	892
PspGI	CCWGG	1 cut(s)	374
PspN4I	GGNNCC	3 cut(s)	257, 284, 511
PspPI	GGNCC	2 cut(s)	183, 316
PstNI	CAGNNNCTG	1 cut(s)	947
PsuI	RGATCY	4 cut(s)	24, 74, 272, 880
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
RseI	CAYNNNNRTG	1 cut(s)	739
SatI	GCNGC	6 cut(s)	110, 119, 122, 125, 306, 315
Sau3AI	GATC	6 cut(s)	24, 74, 272, 560, 721, 880
Sau96I	GGNCC	2 cut(s)	183, 316
SchI	GAGTC	5 cut(s)	161, 251, 494, 511, 814
ScrFI	CCNGG	1 cut(s)	376
SduI	GDGCHC	2 cut(s)	514, 792
SetI	ASST	6 cut(s)	93, 336, 380, 427, 921, 930
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	1 cut(s)	453
SfoI	GGCGCC	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	739
SmlI	CTYRAG	2 cut(s)	320, 929
SmoI	CTYRAG	2 cut(s)	320, 929
Sse9I	AATT	4 cut(s)	709, 814, 856, 868
SsiI	CCGC	4 cut(s)	110, 119, 305, 314
SspDI	GGCGCC	1 cut(s)	282
SspMI	CTAG	1 cut(s)	831
StyD4I	CCNGG	1 cut(s)	374
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	762, 943
TaqI	TCGA	2 cut(s)	559, 624
TasI	AATT	4 cut(s)	709, 814, 856, 868
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	4 cut(s)	112, 121, 308, 317
TfiI	GAWTC	5 cut(s)	15, 39, 209, 449, 767
TseFI	GTSAC	3 cut(s)	65, 243, 593
TseI	GCWGC	2 cut(s)	121, 124
Tsp45I	GTSAC	3 cut(s)	65, 243, 593
TspDTI	ATGAA	3 cut(s)	159, 462, 735
XagI	CCTNNNNNAGG	1 cut(s)	518
XmiI	GTMKAC	1 cut(s)	864
XspI	CTAG	1 cut(s)	831
Zsp2I	ATGCAT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.