Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0008314

Physical Location & Seq

Genomic Coordinates Forward (+)

40173954 .. 40175195

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G018300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGAGAGGCACAAGTGTAAGCTTTGCATGAGGAGCTTCTCTAATGGCAGAGCTTTAGGGGGTCATATGAGGTCTCACATGATGAACCTTCCGATTCATCAGAATCCAGGAGGGGGGGAGGAGGAGGAGGAGGAGGAAGAAGCGCCACATGATCAAATGCTCATTGATGAAATAGACTCGGTTTCAGCTTCTTCTTCTGATGATGATGAAGAAGAACAAGGAGAAGGGGAGGAAGAAGAGGAAGATGAAGAAGGTTTGTATTACGGGCTTAGAGAAAATCCAAAGAGGAGCATTCGATTAGTAGATCATGAGTTTTCTTTTGCTGTGGATGCTGGCTCTGTTGTTCTTCAGGACAGAGAGAGTGAGACCGAGTCGTCCAAGAACCCAACTCGGAGACGGTCCAAGCGGACTCGGAAATCGGCCATGTTTGATCATCATCATCATCATGACGATCATCAGCAACATCAACATCAACTTCATAATCAATACCACCAGCATGATCCAAAGCTTAATCAACATCACCTAGAAGCCTTCAAGAAAATTAAGCTGAAAAACAAGATAGATTCTTGTGCTAATAATGTAGAGCCAGAACCGGTGAGTTCAATTTCTGATGCCACAACAGAGGAAGATGTAGCCTTTTGTCTCATGATGTTATCGAGAGACAAATGGAAAAAACAAGATAAACAACAAGATGATCAAGACGAAGATGCTGAAGTTGAATTATATAGATCCCTGGACGACAGTGATGAATCCGAGGAACAACTGATCAAGTTTCAAAGAACAAAAAGTAGTCGGGGAAAGTACAAGTGCGAAACTTGCAAGAAAGTCTTCAAATCCTATCAAGCTCTTGGCGGGCACAGAGCGAGTCACAAGAAGATTAAAGCCGCCGCCGCCGCTGCTGCTAATCCAAACCCGAATCGCATTGTTTACGAGCCCCAACCCGACCCAAAAATTAACCACAATGCAGGCAGTTCTTCTTTCGCAAAAACCCATCAATGCCCTGTTTGTTTCAGAGTCTTCTCATCTGGGCAAGCGCTTGGTGGACACAAGAGATCACATGTGACAGGCTCTGCAGCCATTAATAACACTCATCATCATACTCCTCCTGTAAAAAGCTTGGCAAAGCTAGGTGACAATATGATAGATCTTAATCTTCCTGCTCCTGTTGATGATGATGAGATGAGCCAAATCGAGATTTCTGCGGTTTCTGATGCTGAATTTGTGAACCCAATTAGGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

413

Amino Acids

46.86

Weight (kDa)

5.71

Isoelectric Point (pI)

62.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	3 - 27	1.2e-06	C2H2-type zinc finger
zf-C2H2_6	PF13912	268 - 292	2.4e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	331 - 353	9.7e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45120 AT3G60580
fragaria_vesca	FvH4_7g10990
malus_domestica	MD01G1182000.v1.1 MD02G1214100.v1.1 MD07G1114000.v1.1 MD07G1252200.v1.1
prunus_persica	Prupe.2G136700_v2.0.a1 Prupe.2G275700_v2.0.a1
pyrus_communis	pycom01g19180 pycom07g09900 pycom07g22460 pycom12659g00040
rosa_chinensis	RchiOBHm_Chr1g0348921
rosa_laevigata	RLG00000028616
rosa_multiflora	Rmu_sc0000106.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306520
rosa_rugosa	Rorug01G0198500.1
rosa_samantha	Rh1AG216000 Rh1BG182100 Rh1CG200300 Rh1DG212000
rosa_wichuraiana	Rw1G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	373
AciI	CCGC	7 cut(s)	406, 852, 885, 888, 891, 894, 1202
AclWI	GGATC	2 cut(s)	494, 723
AcoI	YGGCCR	1 cut(s)	420
AcsI	RAATTY	1 cut(s)	1217
AcuI	CTGAAG	2 cut(s)	332, 732
AfaI	GTAC	1 cut(s)	803
AfeI	AGCGCT	1 cut(s)	1035
AfiI	CCNNNNNNNGG	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	1057
AgeI	ACCGGT	1 cut(s)	592
AgsI	TTSAA	5 cut(s)	535, 603, 719, 776, 832
AjnI	CCWGG	2 cut(s)	106, 732
AluBI	AGCT	9 cut(s)	22, 36, 53, 188, 508, 547, 845, 1116, 1126
AluI	AGCT	9 cut(s)	22, 36, 53, 188, 508, 547, 845, 1116, 1126
Alw26I	GTCTC	5 cut(s)	78, 359, 388, 647, 654
AlwI	GGATC	2 cut(s)	494, 723
AlwNI	CAGNNNCTG	1 cut(s)	1070
Aor51HI	AGCGCT	1 cut(s)	1035
AoxI	GGCC	1 cut(s)	420
ApeKI	GCWGC	3 cut(s)	896, 899, 1073
ApoI	RAATTY	1 cut(s)	1217
AseI	ATTAAT	1 cut(s)	1080
AsiGI	ACCGGT	1 cut(s)	592
Asp700I	GAANNNNTTC	1 cut(s)	827
AspLEI	GCGC	2 cut(s)	145, 1036
AspS9I	GGNCC	1 cut(s)	399
AsuHPI	GGTGA	3 cut(s)	512, 607, 1142
AvaII	GGWCC	1 cut(s)	399
BaeGI	GKGCMC	1 cut(s)	858
BanII	GRGCYC	1 cut(s)	936
BbsI	GAAGAC	2 cut(s)	820, 1009
BbvI	GCAGC	3 cut(s)	883, 886, 1085
BccI	CCATC	1 cut(s)	999
BcgI	CGANNNNNNTGC	2 cut(s)	1181, 1215
BciT130I	CCWGG	2 cut(s)	108, 734
BclI	TGATCA	4 cut(s)	151, 430, 694, 765
BcoDI	GTCTC	5 cut(s)	78, 359, 388, 647, 654
BfaI	CTAG	2 cut(s)	524, 1127
BfmI	CTRYAG	1 cut(s)	1071
BfoI	RGCGCY	2 cut(s)	146, 1037
BglII	AGATCT	1 cut(s)	1144
BisI	GCNGC	7 cut(s)	885, 888, 891, 894, 897, 900, 1074
BlsI	GCNGC	7 cut(s)	886, 889, 892, 895, 898, 901, 1075
Bme1390I	CCNGG	2 cut(s)	108, 734
Bme18I	GGWCC	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	399
BmrFI	CCNGG	2 cut(s)	108, 734
BmsI	GCATC	4 cut(s)	319, 601, 697, 1201
BpiI	GAAGAC	2 cut(s)	820, 1009
BsaBI	GATNNNNATC	2 cut(s)	435, 1149
BsaI	GGTCTC	2 cut(s)	78, 359
BsaJI	CCNNGG	2 cut(s)	732, 753
BsaWI	WCCGGW	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse118I	RCCGGY	1 cut(s)	592
Bse8I	GATNNNNATC	2 cut(s)	435, 1149
BseBI	CCWGG	2 cut(s)	108, 734
BseDI	CCNNGG	2 cut(s)	732, 753
BseGI	GGATG	1 cut(s)	334
BseJI	GATNNNNATC	2 cut(s)	435, 1149
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseRI	GAGGAG	8 cut(s)	46, 134, 137, 140, 143, 146, 301, 1092
BseSI	GKGCMC	1 cut(s)	858
BseXI	GCAGC	3 cut(s)	883, 886, 1085
BshFI	GGCC	1 cut(s)	422
BshTI	ACCGGT	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	593
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	5 cut(s)	78, 359, 388, 647, 654
BsmBI	CGTCTC	1 cut(s)	388
BsmI	GAATGC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	422
Bso31I	GGTCTC	2 cut(s)	78, 359
Bsp1286I	GDGCHC	2 cut(s)	858, 936
BspACI	CCGC	7 cut(s)	406, 852, 885, 888, 891, 894, 1202
BspANI	GGCC	1 cut(s)	422
BspHI	TCATGA	3 cut(s)	307, 445, 645
BspMAI	CTGCAG	1 cut(s)	1075
BspPI	GGATC	2 cut(s)	494, 723
BspTNI	GGTCTC	2 cut(s)	78, 359
BsrFI	RCCGGY	1 cut(s)	592
BssAI	RCCGGY	1 cut(s)	592
BssECI	CCNNGG	2 cut(s)	732, 753
Bst2UI	CCWGG	2 cut(s)	108, 734
Bst4CI	ACNGT	2 cut(s)	399, 743
Bst6I	CTCTTC	1 cut(s)	231
BstC8I	GCNNGC	4 cut(s)	334, 854, 967, 1032
BstDEI	CTNAG	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	334
BstH2I	RGCGCY	2 cut(s)	146, 1037
BstHHI	GCGC	2 cut(s)	145, 1036
BstMAI	GTCTC	5 cut(s)	78, 359, 388, 647, 654
BstMWI	GCNNNNNNNGC	7 cut(s)	33, 329, 816, 890, 893, 896, 899
BstNI	CCWGG	2 cut(s)	108, 734
BstNSI	RCATGY	1 cut(s)	1061
BstSCI	CCNGG	2 cut(s)	106, 732
BstSFI	CTRYAG	1 cut(s)	1071
BstSLI	GKGCMC	1 cut(s)	858
BstV1I	GCAGC	3 cut(s)	883, 886, 1085
BstV2I	GAAGAC	2 cut(s)	820, 1009
BstX2I	RGATCY	2 cut(s)	728, 1144
BstYI	RGATCY	2 cut(s)	728, 1144
BsuRI	GGCC	1 cut(s)	422
BtsCI	GGATG	1 cut(s)	334
BtsIMutI	CAGTG	1 cut(s)	748
Cac8I	GCNNGC	4 cut(s)	334, 854, 967, 1032
CaiI	CAGNNNCTG	1 cut(s)	1070
CciI	TCATGA	3 cut(s)	307, 445, 645
CfoI	GCGC	2 cut(s)	145, 1036
Cfr10I	RCCGGY	1 cut(s)	592
Cfr13I	GGNCC	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	802
CspAI	ACCGGT	1 cut(s)	592
CviAII	CATG	9 cut(s)	28, 79, 149, 308, 424, 446, 497, 646, 1058
CviQI	GTAC	1 cut(s)	802
DdeI	CTNAG	1 cut(s)	269
DrdI	GACNNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	1 cut(s)	373
EaeI	YGGCCR	1 cut(s)	420
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	936
Eco31I	GGTCTC	2 cut(s)	78, 359
Eco47I	GGWCC	1 cut(s)	399
Eco47III	AGCGCT	1 cut(s)	1035
Eco57I	CTGAAG	2 cut(s)	332, 732
EcoRII	CCWGG	2 cut(s)	106, 732
EcoT38I	GRGCYC	1 cut(s)	936
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	9 cut(s)	31, 82, 152, 311, 427, 449, 500, 649, 1061
FalI	AAGNNNNNCTT	2 cut(s)	812, 844
FatI	CATG	9 cut(s)	27, 78, 148, 307, 423, 445, 496, 645, 1057
FauI	CCCGC	1 cut(s)	845
FauNDI	CATATG	1 cut(s)	66
FbaI	TGATCA	4 cut(s)	151, 430, 694, 765
Fnu4HI	GCNGC	7 cut(s)	885, 888, 891, 894, 897, 900, 1074
FokI	GGATG	1 cut(s)	341
FriOI	GRGCYC	1 cut(s)	936
Fsp4HI	GCNGC	7 cut(s)	885, 888, 891, 894, 897, 900, 1074
FspBI	CTAG	2 cut(s)	524, 1127
GlaI	GCGC	2 cut(s)	144, 1035
GluI	GCNGC	7 cut(s)	885, 888, 891, 894, 897, 900, 1074
HaeII	RGCGCY	2 cut(s)	146, 1037
HaeIII	GGCC	1 cut(s)	422
HapII	CCGG	1 cut(s)	593
HhaI	GCGC	2 cut(s)	145, 1036
Hin1II	CATG	9 cut(s)	31, 82, 152, 311, 427, 449, 500, 649, 1061
Hin6I	GCGC	2 cut(s)	143, 1034
HinP1I	GCGC	2 cut(s)	143, 1034
HindIII	AAGCTT	3 cut(s)	20, 506, 1114
HpaII	CCGG	1 cut(s)	593
HphI	GGTGA	3 cut(s)	512, 607, 1142
Hpy166II	GTNNAC	3 cut(s)	928, 1043, 1225
Hpy188I	TCNGA	9 cut(s)	93, 102, 199, 393, 414, 610, 754, 1013, 1210
Hpy188III	TCNNGA	8 cut(s)	308, 350, 446, 535, 646, 657, 698, 1192
Hpy8I	GTNNAC	3 cut(s)	928, 1043, 1225
HpyAV	CCTTC	4 cut(s)	98, 218, 245, 541
HpyCH4III	ACNGT	2 cut(s)	399, 743
HpyCH4V	TGCA	4 cut(s)	27, 819, 965, 1073
HpyF10VI	GCNNNNNNNGC	7 cut(s)	33, 329, 816, 890, 893, 896, 899
HpyF3I	CTNAG	1 cut(s)	269
Hsp92II	CATG	9 cut(s)	31, 82, 152, 311, 427, 449, 500, 649, 1061
HspAI	GCGC	2 cut(s)	143, 1034
Ksp22I	TGATCA	4 cut(s)	151, 430, 694, 765
LmnI	GCTCC	3 cut(s)	33, 288, 1165
Lsp1109I	GCAGC	3 cut(s)	883, 886, 1085
LweI	GCATC	4 cut(s)	319, 601, 697, 1201
MaeI	CTAG	2 cut(s)	524, 1127
MaeIII	GTNAC	3 cut(s)	866, 1060, 1130
MflI	RGATCY	2 cut(s)	728, 1144
MhlI	GDGCHC	2 cut(s)	858, 936
MluCI	AATT	6 cut(s)	540, 603, 719, 951, 1217, 1230
MlyI	GAGTC	5 cut(s)	170, 380, 403, 874, 1023
MroXI	GAANNNNTTC	1 cut(s)	827
MseI	TTAA	6 cut(s)	510, 543, 879, 954, 1080, 1149
MslI	CAYNNNNRTG	2 cut(s)	444, 495
MspA1I	CMGCKG	1 cut(s)	896
MspI	CCGG	1 cut(s)	593
MspR9I	CCNGG	2 cut(s)	108, 734
Mva1269I	GAATGC	1 cut(s)	291
MvaI	CCWGG	2 cut(s)	108, 734
MwoI	GCNNNNNNNGC	7 cut(s)	33, 329, 816, 890, 893, 896, 899
NdeI	CATATG	1 cut(s)	66
NlaIII	CATG	9 cut(s)	31, 82, 152, 311, 427, 449, 500, 649, 1061
NmuCI	GTSAC	3 cut(s)	866, 1060, 1130
NspI	RCATGY	1 cut(s)	1061
PagI	TCATGA	3 cut(s)	307, 445, 645
PciI	ACATGT	1 cut(s)	1057
PctI	GAATGC	1 cut(s)	291
PdmI	GAANNNNTTC	1 cut(s)	827
PfeI	GAWTC	5 cut(s)	94, 103, 563, 749, 916
PflFI	GACNNNGTC	1 cut(s)	370
PfoI	TCCNGGA	1 cut(s)	106
PinAI	ACCGGT	1 cut(s)	592
PkrI	GCNGC	7 cut(s)	886, 889, 892, 895, 898, 901, 1075
PleI	GAGTC	5 cut(s)	170, 379, 403, 873, 1022
PpsI	GAGTC	5 cut(s)	170, 379, 403, 873, 1022
PscI	ACATGT	1 cut(s)	1057
PshBI	ATTAAT	1 cut(s)	1080
Psp6I	CCWGG	2 cut(s)	106, 732
PspGI	CCWGG	2 cut(s)	106, 732
PspPI	GGNCC	1 cut(s)	399
PstI	CTGCAG	1 cut(s)	1075
PstNI	CAGNNNCTG	1 cut(s)	1070
PsuI	RGATCY	2 cut(s)	728, 1144
PsyI	GACNNNGTC	1 cut(s)	370
RsaI	GTAC	1 cut(s)	803
RsaNI	GTAC	1 cut(s)	802
RseI	CAYNNNNRTG	2 cut(s)	444, 495
SaqAI	TTAA	6 cut(s)	510, 543, 879, 954, 1080, 1149
SatI	GCNGC	7 cut(s)	885, 888, 891, 894, 897, 900, 1074
Sau96I	GGNCC	1 cut(s)	399
SchI	GAGTC	5 cut(s)	170, 380, 403, 874, 1023
ScrFI	CCNGG	2 cut(s)	108, 734
SduI	GDGCHC	2 cut(s)	858, 936
SfaNI	GCATC	4 cut(s)	319, 601, 697, 1201
SfcI	CTRYAG	1 cut(s)	1071
SinI	GGWCC	1 cut(s)	399
SmiMI	CAYNNNNRTG	2 cut(s)	444, 495
Sse9I	AATT	6 cut(s)	540, 603, 719, 951, 1217, 1230
SsiI	CCGC	7 cut(s)	406, 852, 885, 888, 891, 894, 1202
SspMI	CTAG	2 cut(s)	524, 1127
StyD4I	CCNGG	2 cut(s)	106, 732
TaaI	ACNGT	2 cut(s)	399, 743
TaqI	TCGA	3 cut(s)	295, 656, 1191
TaqII	GACCGA	1 cut(s)	383
TasI	AATT	6 cut(s)	540, 603, 719, 951, 1217, 1230
TatI	WGTACW	1 cut(s)	801
TauI	GCSGC	4 cut(s)	887, 890, 893, 896
TfiI	GAWTC	5 cut(s)	94, 103, 563, 749, 916
Tru1I	TTAA	6 cut(s)	510, 543, 879, 954, 1080, 1149
Tru9I	TTAA	6 cut(s)	510, 543, 879, 954, 1080, 1149
TscAI	CASTG	1 cut(s)	748
TseFI	GTSAC	3 cut(s)	866, 1060, 1130
TseI	GCWGC	3 cut(s)	896, 899, 1073
Tsp45I	GTSAC	3 cut(s)	866, 1060, 1130
TspDTI	ATGAA	7 cut(s)	86, 98, 183, 222, 261, 467, 762
TspRI	CASTG	1 cut(s)	748
Tth111I	GACNNNGTC	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	399
VspI	ATTAAT	1 cut(s)	1080
XapI	RAATTY	1 cut(s)	1217
XceI	RCATGY	1 cut(s)	1061
XmnI	GAANNNNTTC	1 cut(s)	827
XspI	CTAG	2 cut(s)	524, 1127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.