pycom07g09900

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
9488698 .. 9489858
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g09900.1

Sequence Viewer

Length: 1161 bp
ATGGAGAAGCATGGGTGTAAGATTTGCATGAGGAGTTTCCCCAATGGCAGAGCCTTGGGGGGTCATATGAGGTCTCACGTGAGGAACCATCCTTTTCCTCCGAAACCAGAAGAAGAAGAATCGAATCGAGAACAAACCCAGTTCACCATGGATGAGGTAGACAATTCAACTTCAGCTTCGTCTTCGTCAGAGGATGATGGCGAAGAACAAGACGATGATATGATTTATGGCCTTAGAGAGAATCCAAAGAGAAGCATAAAGCTAGTGGATCCTGAGTTTTCTTTTGCCGCGCATGCTGGGTCTGTTGTTCTTCAAGATAGAGAGAGTGAGACAGAGTCGTCAAAGAACCCAACTCGGAGACGATCCAAAAGAACACGAAAATCCTCTGTGATGGAGCTTCATCATCATCAAAATCATATTCAGTACCACCATCATCCAAAGCTCGAAGCTTTGAAGAAAATTAAGCTCAAGAACAAAGTGGTCAGCAGCAAGGATTCTTTCGAGCCTGAACCGGTAAGTTCAATATCTGATGCCACTAGAGAGGAAGACGTCGCCTTCTGCCTCATGATGCTATCTAGAGACAAATGGAGAAAACAAGACCACCACCACCAACATGAGCAAGAACAAGAACAAGAACAAGCCGATGAAGCGGAAAGATCGATGGAGGACACGGAAGATTCTGAGGAGCATCTGATCAAGTGCCCCAGAATTAGAACTGCTCGAAGGAAATACAAATGTGAAACGTGCAACAAAGTTTTTAAATCTTATCAGGCTCTAGGTGGTCACAGAGCAAGCCATAAGAAGATTAAGGCTTCGAATCTGAACCCCATTTACGAGCCCGAATTGGAGCAAGAAAATCTCAATGCAGCAGGAAAATCTTCCTCTGTGGCTGAAAGAAAAATTCATGAATGCCCAGTTTGTTTTAGAGTTTTTTCATCTGGTCAAGCGCTTGGAGGGCACAAAAGATCTCATGTGATGGCTGGTTCTGCAGCAGCAGCAGCAAGAAATAGCAGTCCTCCATTTCCATGGAAGAGTTTAAGTAGGCTTGGTGATAGTTTGATAGATCTTAATCTGCCTGCTCCTGTTGACGATGATGAAATCAGCCAAATCGAGCTCTCTGCAGTTTCTGATGCAGAGTTTGTGAACCGTGTTAGAAGTTGA

Protein Analysis

387

Amino Acids

43.88

Weight (kDa)

6.43

Isoelectric Point (pI)

65.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 4 - 26 2.9e-06 C2H2-type zinc finger
zf-C2H2_6 PF13912 244 - 268 8.4e-12 C2H2-type zinc finger
zf-C2H2_6 PF13912 302 - 324 8e-10 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 337
AatII GACGTC 1 cut(s) 552
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 290
AciI CCGC 2 cut(s) 288, 650
AclWI GGATC 3 cut(s) 263, 276, 357
AcsI RAATTY 1 cut(s) 900
AcuI CTGAAG 1 cut(s) 156
AcvI CACGTG 1 cut(s) 79
AcyI GRCGYC 1 cut(s) 549
AfaI GTAC 1 cut(s) 425
AfeI AGCGCT 1 cut(s) 948
AgeI ACCGGT 1 cut(s) 511
AgsI TTSAA 4 cut(s) 168, 314, 454, 522
AluBI AGCT 7 cut(s) 176, 262, 397, 442, 449, 466, 1114
AluI AGCT 7 cut(s) 176, 262, 397, 442, 449, 466, 1114
Alw21I GWGCWC 1 cut(s) 1116
Alw26I GTCTC 4 cut(s) 78, 323, 352, 573
AlwI GGATC 3 cut(s) 263, 276, 357
AlwNI CAGNNNCTG 1 cut(s) 1127
Aor51HI AGCGCT 1 cut(s) 948
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 6 cut(s) 486, 866, 989, 992, 995, 998
ApoI RAATTY 1 cut(s) 900
AsiGI ACCGGT 1 cut(s) 511
Asp700I GAANNNNTTC 1 cut(s) 877
AspLEI GCGC 2 cut(s) 292, 949
AsuHPI GGTGA 2 cut(s) 136, 1061
AsuII TTCGAA 1 cut(s) 815
BaeGI GKGCMC 2 cut(s) 704, 960
BamHI GGATCC 1 cut(s) 268
BanII GRGCYC 2 cut(s) 840, 1116
BbrPI CACGTG 1 cut(s) 79
BbsI GAAGAC 2 cut(s) 174, 552
Bbv12I GWGCWC 1 cut(s) 1116
BbvI GCAGC 6 cut(s) 498, 878, 1001, 1004, 1007, 1010
BccI CCATC 6 cut(s) 96, 191, 385, 438, 655, 970
BcgI CGANNNNNNTGC 2 cut(s) 1100, 1134
BclI TGATCA 1 cut(s) 693
BcoDI GTCTC 4 cut(s) 78, 323, 352, 573
BfaI CTAG 4 cut(s) 263, 537, 576, 776
BfmI CTRYAG 2 cut(s) 987, 1119
BfoI RGCGCY 1 cut(s) 950
BglII AGATCT 2 cut(s) 965, 1063
BisI GCNGC 7 cut(s) 288, 487, 867, 990, 993, 996, 999
BlsI GCNGC 7 cut(s) 289, 488, 868, 991, 994, 997, 1000
BmiI GGNNCC 2 cut(s) 86, 270
BmrI ACTGGG 2 cut(s) 133, 908
BmsI GCATC 4 cut(s) 520, 558, 697, 1120
BmuI ACTGGG 2 cut(s) 133, 908
BpiI GAAGAC 2 cut(s) 174, 552
Bpu14I TTCGAA 1 cut(s) 815
BpuEI CTTGAG 1 cut(s) 452
Bsa29I ATCGAT 1 cut(s) 659
BsaAI YACGTR 1 cut(s) 79
BsaBI GATNNNNATC 1 cut(s) 1068
BsaHI GRCGYC 1 cut(s) 549
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 3 cut(s) 54, 147, 1025
BsaWI WCCGGW 1 cut(s) 511
Bse118I RCCGGY 1 cut(s) 511
Bse1I ACTGG 2 cut(s) 139, 914
Bse8I GATNNNNATC 1 cut(s) 1068
BseCI ATCGAT 1 cut(s) 659
BseDI CCNNGG 3 cut(s) 54, 147, 1025
BseGI GGATG 4 cut(s) 88, 157, 199, 433
BseJI GATNNNNATC 1 cut(s) 1068
BseMII CTCAG 2 cut(s) 264, 672
BseNI ACTGG 2 cut(s) 139, 914
BseRI GAGGAG 2 cut(s) 46, 698
BseSI GKGCMC 2 cut(s) 704, 960
BseXI GCAGC 6 cut(s) 498, 878, 1001, 1004, 1007, 1010
BseYI CCCAGC 1 cut(s) 296
Bsh1236I CGCG 1 cut(s) 290
BshFI GGCC 1 cut(s) 231
BshTI ACCGGT 1 cut(s) 511
BshVI ATCGAT 1 cut(s) 659
BsiHKAI GWGCWC 1 cut(s) 1116
BsiSI CCGG 1 cut(s) 512
BsmAI GTCTC 4 cut(s) 78, 323, 352, 573
BsmBI CGTCTC 1 cut(s) 352
BsmI GAATGC 1 cut(s) 914
BsnI GGCC 1 cut(s) 231
Bso31I GGTCTC 1 cut(s) 78
Bsp119I TTCGAA 1 cut(s) 815
Bsp1286I GDGCHC 4 cut(s) 704, 840, 960, 1116
Bsp143I GATC 6 cut(s) 268, 362, 656, 693, 965, 1063
Bsp19I CCATGG 2 cut(s) 147, 1025
BspACI CCGC 2 cut(s) 288, 650
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 2 cut(s) 265, 673
BspDI ATCGAT 1 cut(s) 659
BspFNI CGCG 1 cut(s) 290
BspHI TCATGA 2 cut(s) 564, 904
BspLI GGNNCC 2 cut(s) 86, 270
BspMAI CTGCAG 2 cut(s) 991, 1123
BspPI GGATC 3 cut(s) 263, 276, 357
BspT104I TTCGAA 1 cut(s) 815
BspTNI GGTCTC 1 cut(s) 78
BsrFI RCCGGY 1 cut(s) 511
BsrI ACTGG 2 cut(s) 139, 914
BssAI RCCGGY 1 cut(s) 511
BssECI CCNNGG 3 cut(s) 54, 147, 1025
BssMI GATC 6 cut(s) 268, 362, 656, 693, 965, 1063
BssNI GRCGYC 1 cut(s) 549
BssT1I CCWWGG 3 cut(s) 54, 147, 1025
Bst4CI ACNGT 1 cut(s) 1148
Bst6I CTCTTC 1 cut(s) 1025
BstACI GRCGYC 1 cut(s) 549
BstBAI YACGTR 1 cut(s) 79
BstBI TTCGAA 1 cut(s) 815
BstC8I GCNNGC 3 cut(s) 294, 793, 1077
BstDEI CTNAG 3 cut(s) 233, 273, 681
BstDSI CCRYGG 2 cut(s) 147, 1025
BstF5I GGATG 4 cut(s) 88, 157, 199, 433
BstFNI CGCG 1 cut(s) 290
BstH2I RGCGCY 1 cut(s) 950
BstHHI GCGC 2 cut(s) 292, 949
BstKTI GATC 6 cut(s) 271, 365, 659, 696, 968, 1066
BstMAI GTCTC 4 cut(s) 78, 323, 352, 573
BstMBI GATC 6 cut(s) 268, 362, 656, 693, 965, 1063
BstMWI GCNNNNNNNGC 6 cut(s) 293, 647, 955, 986, 995, 998
BstNSI RCATGY 1 cut(s) 296
BstSFI CTRYAG 2 cut(s) 987, 1119
BstSLI GKGCMC 2 cut(s) 704, 960
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 6 cut(s) 498, 878, 1001, 1004, 1007, 1010
BstV2I GAAGAC 2 cut(s) 174, 552
BstX2I RGATCY 3 cut(s) 268, 965, 1063
BstXI CCANNNNNNTGG 1 cut(s) 1026
BstYI RGATCY 3 cut(s) 268, 965, 1063
Bsu15I ATCGAT 1 cut(s) 659
BsuRI GGCC 1 cut(s) 231
BsuTUI ATCGAT 1 cut(s) 659
BtgI CCRYGG 2 cut(s) 147, 1025
BtsCI GGATG 4 cut(s) 88, 157, 199, 433
Cac8I GCNNGC 3 cut(s) 294, 793, 1077
CaiI CAGNNNCTG 1 cut(s) 1127
CciI TCATGA 2 cut(s) 564, 904
CfoI GCGC 2 cut(s) 292, 949
Cfr10I RCCGGY 1 cut(s) 511
ClaI ATCGAT 1 cut(s) 659
Csp6I GTAC 1 cut(s) 424
CspAI ACCGGT 1 cut(s) 511
CviAII CATG 9 cut(s) 11, 28, 148, 293, 565, 614, 905, 971, 1026
CviQI GTAC 1 cut(s) 424
DdeI CTNAG 3 cut(s) 233, 273, 681
DpnI GATC 6 cut(s) 270, 364, 658, 695, 967, 1065
DpnII GATC 6 cut(s) 268, 362, 656, 693, 965, 1063
DraI TTTAAA 1 cut(s) 760
DrdI GACNNNNNNGTC 1 cut(s) 337
DseDI GACNNNNNNGTC 1 cut(s) 337
Eam1104I CTCTTC 1 cut(s) 1025
EarI CTCTTC 1 cut(s) 1025
Ecl136II GAGCTC 1 cut(s) 1114
Eco130I CCWWGG 3 cut(s) 54, 147, 1025
Eco24I GRGCYC 2 cut(s) 840, 1116
Eco31I GGTCTC 1 cut(s) 78
Eco47III AGCGCT 1 cut(s) 948
Eco53kI GAGCTC 1 cut(s) 1114
Eco57I CTGAAG 1 cut(s) 156
Eco72I CACGTG 1 cut(s) 79
EcoICRI GAGCTC 1 cut(s) 1114
EcoT14I CCWWGG 3 cut(s) 54, 147, 1025
EcoT38I GRGCYC 2 cut(s) 840, 1116
ErhI CCWWGG 3 cut(s) 54, 147, 1025
Esp3I CGTCTC 1 cut(s) 352
FaeI CATG 9 cut(s) 14, 31, 151, 296, 568, 617, 908, 974, 1029
FatI CATG 9 cut(s) 10, 27, 147, 292, 564, 613, 904, 970, 1025
FauNDI CATATG 1 cut(s) 66
FbaI TGATCA 1 cut(s) 693
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 7 cut(s) 288, 487, 867, 990, 993, 996, 999
FokI GGATG 4 cut(s) 75, 164, 206, 420
FriOI GRGCYC 2 cut(s) 840, 1116
Fsp4HI GCNGC 7 cut(s) 288, 487, 867, 990, 993, 996, 999
FspBI CTAG 4 cut(s) 263, 537, 576, 776
GlaI GCGC 2 cut(s) 291, 948
GluI GCNGC 7 cut(s) 288, 487, 867, 990, 993, 996, 999
GsaI CCCAGC 1 cut(s) 300
HaeII RGCGCY 1 cut(s) 950
HaeIII GGCC 1 cut(s) 231
HapII CCGG 1 cut(s) 512
HhaI GCGC 2 cut(s) 292, 949
Hin1I GRCGYC 1 cut(s) 549
Hin1II CATG 9 cut(s) 14, 31, 151, 296, 568, 617, 908, 974, 1029
Hin6I GCGC 2 cut(s) 290, 947
HinP1I GCGC 2 cut(s) 290, 947
HincII GTYRAC 1 cut(s) 1087
HindII GTYRAC 1 cut(s) 1087
HindIII AAGCTT 1 cut(s) 447
HinfI GANTC 7 cut(s) 119, 124, 241, 335, 494, 677, 817
HpaII CCGG 1 cut(s) 512
HphI GGTGA 2 cut(s) 136, 1061
Hpy166II GTNNAC 4 cut(s) 144, 160, 1087, 1144
Hpy188I TCNGA 8 cut(s) 102, 190, 357, 529, 682, 693, 822, 1129
Hpy188III TCNNGA 7 cut(s) 128, 272, 314, 469, 565, 576, 905
Hpy8I GTNNAC 4 cut(s) 144, 160, 1087, 1144
Hpy99I CGWCG 1 cut(s) 554
HpyAV CCTTC 2 cut(s) 565, 717
HpyCH4III ACNGT 1 cut(s) 1148
HpyCH4IV ACGT 3 cut(s) 78, 549, 743
HpyCH4V TGCA 6 cut(s) 27, 747, 866, 989, 1121, 1133
HpyF10VI GCNNNNNNNGC 6 cut(s) 293, 647, 955, 986, 995, 998
HpyF3I CTNAG 3 cut(s) 233, 273, 681
HpySE526I ACGT 3 cut(s) 78, 549, 743
Hsp92I GRCGYC 1 cut(s) 549
Hsp92II CATG 9 cut(s) 14, 31, 151, 296, 568, 617, 908, 974, 1029
HspAI GCGC 2 cut(s) 290, 947
Ksp22I TGATCA 1 cut(s) 693
Kzo9I GATC 6 cut(s) 268, 362, 656, 693, 965, 1063
LmnI GCTCC 4 cut(s) 394, 685, 847, 1084
Lsp1109I GCAGC 6 cut(s) 498, 878, 1001, 1004, 1007, 1010
LweI GCATC 4 cut(s) 520, 558, 697, 1120
MaeI CTAG 4 cut(s) 263, 537, 576, 776
MaeII ACGT 3 cut(s) 78, 549, 743
MaeIII GTNAC 1 cut(s) 782
MalI GATC 6 cut(s) 270, 364, 658, 695, 967, 1065
MboI GATC 6 cut(s) 268, 362, 656, 693, 965, 1063
MflI RGATCY 3 cut(s) 268, 965, 1063
MhlI GDGCHC 4 cut(s) 704, 840, 960, 1116
MluCI AATT 5 cut(s) 163, 459, 708, 842, 900
MlyI GAGTC 1 cut(s) 344
MroXI GAANNNNTTC 1 cut(s) 877
MseI TTAA 5 cut(s) 462, 759, 807, 1037, 1068
MslI CAYNNNNRTG 2 cut(s) 612, 1024
MspI CCGG 1 cut(s) 512
Mva1269I GAATGC 1 cut(s) 914
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 6 cut(s) 293, 647, 955, 986, 995, 998
NcoI CCATGG 2 cut(s) 147, 1025
NdeI CATATG 1 cut(s) 66
NdeII GATC 6 cut(s) 268, 362, 656, 693, 965, 1063
NlaIII CATG 9 cut(s) 14, 31, 151, 296, 568, 617, 908, 974, 1029
NlaIV GGNNCC 2 cut(s) 86, 270
NmuCI GTSAC 1 cut(s) 782
NspI RCATGY 1 cut(s) 296
NspV TTCGAA 1 cut(s) 815
PaeI GCATGC 1 cut(s) 296
PagI TCATGA 2 cut(s) 564, 904
PctI GAATGC 1 cut(s) 914
PdmI GAANNNNTTC 1 cut(s) 877
PfeI GAWTC 6 cut(s) 119, 124, 241, 494, 677, 817
PflFI GACNNNGTC 1 cut(s) 334
PinAI ACCGGT 1 cut(s) 511
PkrI GCNGC 7 cut(s) 289, 488, 868, 991, 994, 997, 1000
PleI GAGTC 1 cut(s) 343
PmaCI CACGTG 1 cut(s) 79
PmlI CACGTG 1 cut(s) 79
PpsI GAGTC 1 cut(s) 343
Ppu21I YACGTR 1 cut(s) 79
Psp124BI GAGCTC 1 cut(s) 1116
PspCI CACGTG 1 cut(s) 79
PspFI CCCAGC 1 cut(s) 296
PspN4I GGNNCC 2 cut(s) 86, 270
PsrI GAACNNNNNNTAC 2 cut(s) 815, 847
PstI CTGCAG 2 cut(s) 991, 1123
PstNI CAGNNNCTG 1 cut(s) 1127
PsuI RGATCY 3 cut(s) 268, 965, 1063
PsyI GACNNNGTC 1 cut(s) 334
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
RseI CAYNNNNRTG 2 cut(s) 612, 1024
SacI GAGCTC 1 cut(s) 1116
SaqAI TTAA 5 cut(s) 462, 759, 807, 1037, 1068
SatI GCNGC 7 cut(s) 288, 487, 867, 990, 993, 996, 999
Sau3AI GATC 6 cut(s) 268, 362, 656, 693, 965, 1063
SchI GAGTC 1 cut(s) 344
SduI GDGCHC 4 cut(s) 704, 840, 960, 1116
SfaNI GCATC 4 cut(s) 520, 558, 697, 1120
SfcI CTRYAG 2 cut(s) 987, 1119
SfuI TTCGAA 1 cut(s) 815
SmiMI CAYNNNNRTG 2 cut(s) 612, 1024
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
SphI GCATGC 1 cut(s) 296
Sse9I AATT 5 cut(s) 163, 459, 708, 842, 900
SsiI CCGC 2 cut(s) 288, 650
SspMI CTAG 4 cut(s) 263, 537, 576, 776
SstI GAGCTC 1 cut(s) 1116
StyI CCWWGG 3 cut(s) 54, 147, 1025
TaaI ACNGT 1 cut(s) 1148
TaiI ACGT 3 cut(s) 81, 552, 746
TaqI TCGA 8 cut(s) 122, 127, 444, 501, 659, 721, 815, 1110
TasI AATT 5 cut(s) 163, 459, 708, 842, 900
TauI GCSGC 1 cut(s) 290
TfiI GAWTC 6 cut(s) 119, 124, 241, 494, 677, 817
Tru1I TTAA 5 cut(s) 462, 759, 807, 1037, 1068
Tru9I TTAA 5 cut(s) 462, 759, 807, 1037, 1068
TseFI GTSAC 1 cut(s) 782
TseI GCWGC 6 cut(s) 486, 866, 989, 992, 995, 998
Tsp45I GTSAC 1 cut(s) 782
TspDTI ATGAA 6 cut(s) 389, 660, 893, 921, 924, 1110
TspGWI ACGGA 1 cut(s) 686
Tth111I GACNNNGTC 1 cut(s) 334
XapI RAATTY 1 cut(s) 900
XbaI TCTAGA 1 cut(s) 575
XceI RCATGY 1 cut(s) 296
XmiI GTMKAC 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 877
XspI CTAG 4 cut(s) 263, 537, 576, 776
ZraI GACGTC 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.