Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008314

Physical Location & Seq

Genomic Coordinates Reverse (-)

17970157 .. 17971110

Gene Structure 954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g19180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAGAAGCACAGAATCTGCAAGATCTGCAACAAGCGGTTCTCCAATGGAAAAGCGATGGGGGGTCACATGAGGTCCCACCTCGCCAAGCTTCCTCTCCCTCCGAAGCCGCAGTCGCCGCAGCAGCAGCAGCATCACCAACTCAGTAACTCGCCGGAGTCGTCGTCTCTTCCATTTTCGACCTCGAACAGGGGCATGCATTCTTCTCTGGATTCAGCCGTGGTCCACGACGACAGCGACAGCGAGTCACACCCGAGAAACCCAACTCGGAGAAGATCCAAGCGGCGCCGCAAAGTGCTTGGCAAATCTTCGCCGCTGCCGTTCGAGGCAGAACAGGTGAGTTCTGTTTCCGATACTTTTTCAACTGAAGATGTTGCCAGGTGTCTCATCATGCTATCGATGGATAAATGGAAAAAAGTGAAAGTAAAAAATGGGGTGGATGAGTCCGTGGAGAAGGAGGAGGAAGATGAGTCCGACAGTGGCGGCCGTTCAGATTTTCGGATCAAGGATCGAGTCCGGAGTCGGGGAAAGTACAAGTGCGAGACTTGTGACAAAGTGTTCCGATCTTATCAAGCGCTCGGAGGGCACAGAGCGAGTCACAAGAAAACCATCAAAACCCAAGTGTTTGATGACTATGAAGAGGACGAAGATGAAGATTTTGAGGAAGATGATGGGCAGGATGGTAACCAGGATGTGGTGGAGAATCACAGGACATTTGAGTGCTGTGTTTGTTTCAGACAGTTTGATTCCGGCCAAGCACTCGGTGGGCATAAAAAAGTACACTACTACAATAATTTGATCAACAATGCCCCTGCTAGGAATGTTAATTTGTCATCATCTTCTACTAATTTTGTGGACAATTTGGTCATTGACCTCAATCTCCCTGCACCAGAGGAGGAGGAAGAAGAAGATGAAGAGGTAAGCCAGGTTGAATTCTCAACAGTTTCCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

318

Amino Acids

36.01

Weight (kDa)

5.68

Isoelectric Point (pI)

73.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	5 - 29	8.9e-09	C2H2-type zinc finger
zf-C2H2_6	PF13912	178 - 202	4.5e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	239 - 261	8.1e-06	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45120 AT3G60580
fragaria_vesca	FvH4_7g10990
malus_domestica	MD01G1182000.v1.1 MD02G1214100.v1.1 MD07G1114000.v1.1 MD07G1252200.v1.1
prunus_persica	Prupe.2G136700_v2.0.a1 Prupe.2G275700_v2.0.a1
pyrus_communis	pycom01g19180 pycom07g09900 pycom07g22460 pycom12659g00040
rosa_chinensis	RchiOBHm_Chr1g0348921
rosa_laevigata	RLG00000028616
rosa_multiflora	Rmu_sc0000106.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306520
rosa_rugosa	Rorug01G0198500.1
rosa_samantha	Rh1AG216000 Rh1BG182100 Rh1CG200300 Rh1DG212000
rosa_wichuraiana	Rw1G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	863
AccB1I	GGYRCC	1 cut(s)	285
AccB7I	CCANNNNNTGG	1 cut(s)	694
AccIII	TCCGGA	1 cut(s)	516
AciI	CCGC	7 cut(s)	37, 110, 119, 283, 289, 314, 483
AclWI	GGATC	3 cut(s)	270, 509, 516
AcoI	YGGCCR	2 cut(s)	484, 751
AcsI	RAATTY	1 cut(s)	932
AcuI	CTGAAG	1 cut(s)	387
AcyI	GRCGYC	1 cut(s)	286
AdeI	CACNNNGTG	1 cut(s)	764
AfaI	GTAC	2 cut(s)	533, 780
AfeI	AGCGCT	1 cut(s)	576
AfiI	CCNNNNNNNGG	4 cut(s)	189, 523, 694, 816
AgsI	TTSAA	2 cut(s)	363, 932
AhdI	GACNNNNNGTC	1 cut(s)	244
AjnI	CCWGG	3 cut(s)	377, 687, 924
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw26I	GTCTC	3 cut(s)	171, 389, 536
AlwI	GGATC	3 cut(s)	270, 509, 516
AlwNI	CAGNNNCTG	1 cut(s)	18
Ama87I	CYCGRG	1 cut(s)	253
Aor13HI	TCCGGA	1 cut(s)	516
Aor51HI	AGCGCT	1 cut(s)	576
AoxI	GGCC	2 cut(s)	484, 751
ApeKI	GCWGC	5 cut(s)	121, 124, 127, 130, 316
ApoI	RAATTY	1 cut(s)	932
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspLEI	GCGC	2 cut(s)	288, 577
AspS9I	GGNCC	2 cut(s)	75, 223
AsuHPI	GGTGA	2 cut(s)	128, 349
AvaI	CYCGRG	1 cut(s)	253
AvaII	GGWCC	2 cut(s)	75, 223
BaeGI	GKGCMC	1 cut(s)	588
BanI	GGYRCC	1 cut(s)	285
BbvI	GCAGC	5 cut(s)	133, 136, 139, 142, 303
BccI	CCATC	5 cut(s)	52, 394, 617, 665, 674
BceAI	ACGGC	3 cut(s)	203, 304, 471
BciT130I	CCWGG	3 cut(s)	379, 689, 926
BclI	TGATCA	1 cut(s)	798
BcoDI	GTCTC	3 cut(s)	171, 389, 536
BfaI	CTAG	1 cut(s)	816
BfoI	RGCGCY	2 cut(s)	289, 578
BglII	AGATCT	1 cut(s)	24
Bme1390I	CCNGG	3 cut(s)	379, 689, 926
Bme18I	GGWCC	2 cut(s)	75, 223
BmeRI	GACNNNNNGTC	1 cut(s)	244
BmeT110I	CYCGRG	1 cut(s)	253
BmgT120I	GGNCC	2 cut(s)	75, 223
BmiI	GGNNCC	2 cut(s)	77, 287
BmrFI	CCNGG	3 cut(s)	379, 689, 926
BmsI	GCATC	1 cut(s)	142
Bsa29I	ATCGAT	1 cut(s)	398
BsaHI	GRCGYC	1 cut(s)	286
BsaJI	CCNNGG	2 cut(s)	219, 447
BsaWI	WCCGGW	1 cut(s)	516
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	4 cut(s)	189, 523, 694, 816
BseAI	TCCGGA	1 cut(s)	516
BseBI	CCWGG	3 cut(s)	379, 689, 926
BseCI	ATCGAT	1 cut(s)	398
BseDI	CCNNGG	2 cut(s)	219, 447
BseGI	GGATG	3 cut(s)	445, 685, 697
BseLI	CCNNNNNNNGG	4 cut(s)	189, 523, 694, 816
BseMII	CTCAG	1 cut(s)	157
BseRI	GAGGAG	3 cut(s)	473, 908, 911
BseSI	GKGCMC	1 cut(s)	588
BseX3I	CGGCCG	1 cut(s)	484
BseXI	GCAGC	5 cut(s)	133, 136, 139, 142, 303
BsgI	GTGCAG	1 cut(s)	870
Bsh1285I	CGRYCG	1 cut(s)	487
BshFI	GGCC	2 cut(s)	486, 753
BshNI	GGYRCC	1 cut(s)	285
BshVI	ATCGAT	1 cut(s)	398
BsiEI	CGRYCG	1 cut(s)	487
BsiHKCI	CYCGRG	1 cut(s)	253
BsiSI	CCGG	3 cut(s)	155, 517, 750
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	4 cut(s)	189, 523, 694, 816
BsmAI	GTCTC	3 cut(s)	171, 389, 536
BsmBI	CGTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	2 cut(s)	486, 753
BsoBI	CYCGRG	1 cut(s)	253
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp13I	TCCGGA	1 cut(s)	516
Bsp143I	GATC	6 cut(s)	24, 275, 501, 508, 563, 798
BspACI	CCGC	7 cut(s)	37, 110, 119, 283, 289, 314, 483
BspANI	GGCC	2 cut(s)	486, 753
BspCNI	CTCAG	1 cut(s)	156
BspDI	ATCGAT	1 cut(s)	398
BspEI	TCCGGA	1 cut(s)	516
BspLI	GGNNCC	2 cut(s)	77, 287
BspPI	GGATC	3 cut(s)	270, 509, 516
BspT107I	GGYRCC	1 cut(s)	285
BssECI	CCNNGG	2 cut(s)	219, 447
BssMI	GATC	6 cut(s)	24, 275, 501, 508, 563, 798
BssNI	GRCGYC	1 cut(s)	286
Bst2UI	CCWGG	3 cut(s)	379, 689, 926
Bst4CI	ACNGT	3 cut(s)	479, 741, 943
Bst6I	CTCTTC	3 cut(s)	174, 633, 909
BstACI	GRCGYC	1 cut(s)	286
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	1 cut(s)	143
BstDSI	CCRYGG	2 cut(s)	219, 447
BstEII	GGTNACC	1 cut(s)	683
BstENI	CCTNNNNNAGG	1 cut(s)	187
BstF5I	GGATG	3 cut(s)	445, 685, 697
BstH2I	RGCGCY	2 cut(s)	289, 578
BstHHI	GCGC	2 cut(s)	288, 577
BstKTI	GATC	6 cut(s)	27, 278, 504, 511, 566, 801
BstMAI	GTCTC	3 cut(s)	171, 389, 536
BstMBI	GATC	6 cut(s)	24, 275, 501, 508, 563, 798
BstMCI	CGRYCG	1 cut(s)	487
BstMWI	GCNNNNNNNGC	7 cut(s)	27, 115, 118, 124, 127, 130, 583
BstNI	CCWGG	3 cut(s)	379, 689, 926
BstNSI	RCATGY	1 cut(s)	199
BstPI	GGTNACC	1 cut(s)	683
BstSCI	CCNGG	3 cut(s)	377, 687, 924
BstSLI	GKGCMC	1 cut(s)	588
BstV1I	GCAGC	5 cut(s)	133, 136, 139, 142, 303
BstX2I	RGATCY	2 cut(s)	24, 275
BstYI	RGATCY	2 cut(s)	24, 275
BstZI	CGGCCG	1 cut(s)	484
Bsu15I	ATCGAT	1 cut(s)	398
BsuRI	GGCC	2 cut(s)	486, 753
BsuTUI	ATCGAT	1 cut(s)	398
BtgI	CCRYGG	2 cut(s)	219, 447
BtgZI	GCGATG	1 cut(s)	71
BtsCI	GGATG	3 cut(s)	445, 685, 697
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	197
CaiI	CAGNNNCTG	1 cut(s)	18
CfoI	GCGC	2 cut(s)	288, 577
Cfr13I	GGNCC	2 cut(s)	75, 223
ClaI	ATCGAT	1 cut(s)	398
Csp6I	GTAC	2 cut(s)	532, 779
CviAII	CATG	3 cut(s)	70, 196, 391
CviJI	RGCY	6 cut(s)	91, 109, 218, 486, 753, 924
CviKI_1	RGCY	6 cut(s)	91, 109, 218, 486, 753, 924
CviQI	GTAC	2 cut(s)	532, 779
DdeI	CTNAG	1 cut(s)	143
DinI	GGCGCC	1 cut(s)	287
DpnI	GATC	6 cut(s)	26, 277, 503, 510, 565, 800
DpnII	GATC	6 cut(s)	24, 275, 501, 508, 563, 798
DraIII	CACNNNGTG	1 cut(s)	764
DrdI	GACNNNNNNGTC	1 cut(s)	863
DriI	GACNNNNNGTC	1 cut(s)	244
DseDI	GACNNNNNNGTC	1 cut(s)	863
EaeI	YGGCCR	2 cut(s)	484, 751
EagI	CGGCCG	1 cut(s)	484
Eam1104I	CTCTTC	3 cut(s)	174, 633, 909
Eam1105I	GACNNNNNGTC	1 cut(s)	244
EarI	CTCTTC	3 cut(s)	174, 633, 909
EclXI	CGGCCG	1 cut(s)	484
Eco47I	GGWCC	2 cut(s)	75, 223
Eco47III	AGCGCT	1 cut(s)	576
Eco52I	CGGCCG	1 cut(s)	484
Eco57I	CTGAAG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	253
Eco91I	GGTNACC	1 cut(s)	683
EcoNI	CCTNNNNNAGG	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	75
EcoO65I	GGTNACC	1 cut(s)	683
EcoRI	GAATTC	1 cut(s)	932
EcoRII	CCWGG	3 cut(s)	377, 687, 924
EcoT22I	ATGCAT	1 cut(s)	201
EgeI	GGCGCC	1 cut(s)	287
EheI	GGCGCC	1 cut(s)	287
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	3 cut(s)	73, 199, 394
FaiI	YATR	5 cut(s)	71, 197, 392, 636, 771
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	3 cut(s)	69, 195, 390
FbaI	TGATCA	1 cut(s)	798
FokI	GGATG	3 cut(s)	452, 692, 704
FspBI	CTAG	1 cut(s)	816
GlaI	GCGC	2 cut(s)	287, 576
HaeII	RGCGCY	2 cut(s)	289, 578
HaeIII	GGCC	2 cut(s)	486, 753
HapII	CCGG	3 cut(s)	155, 517, 750
HhaI	GCGC	2 cut(s)	288, 577
Hin1I	GRCGYC	1 cut(s)	286
Hin1II	CATG	3 cut(s)	73, 199, 394
Hin6I	GCGC	2 cut(s)	286, 575
HinP1I	GCGC	2 cut(s)	286, 575
HindIII	AAGCTT	1 cut(s)	89
HpaII	CCGG	3 cut(s)	155, 517, 750
HphI	GGTGA	2 cut(s)	128, 349
Hpy166II	GTNNAC	3 cut(s)	226, 781, 856
Hpy188III	TCNNGA	2 cut(s)	209, 517
Hpy8I	GTNNAC	3 cut(s)	226, 781, 856
Hpy99I	CGWCG	2 cut(s)	166, 233
HpyAV	CCTTC	1 cut(s)	448
HpyCH4III	ACNGT	3 cut(s)	479, 741, 943
HpyCH4V	TGCA	4 cut(s)	21, 30, 199, 887
HpyF10VI	GCNNNNNNNGC	7 cut(s)	27, 115, 118, 124, 127, 130, 583
HpyF3I	CTNAG	1 cut(s)	143
Hsp92I	GRCGYC	1 cut(s)	286
Hsp92II	CATG	3 cut(s)	73, 199, 394
HspAI	GCGC	2 cut(s)	286, 575
KasI	GGCGCC	1 cut(s)	285
Kpn2I	TCCGGA	1 cut(s)	516
Ksp22I	TGATCA	1 cut(s)	798
Kzo9I	GATC	6 cut(s)	24, 275, 501, 508, 563, 798
Lsp1109I	GCAGC	5 cut(s)	133, 136, 139, 142, 303
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	816
MaeIII	GTNAC	6 cut(s)	65, 146, 246, 548, 596, 683
MalI	GATC	6 cut(s)	26, 277, 503, 510, 565, 800
MboI	GATC	6 cut(s)	24, 275, 501, 508, 563, 798
MflI	RGATCY	2 cut(s)	24, 275
MhlI	GDGCHC	1 cut(s)	588
MluCI	AATT	5 cut(s)	793, 826, 847, 859, 932
Mly113I	GGCGCC	1 cut(s)	286
MlyI	GAGTC	7 cut(s)	167, 254, 452, 479, 522, 529, 604
MmeI	TCCRAC	1 cut(s)	498
Mph1103I	ATGCAT	1 cut(s)	201
MroI	TCCGGA	1 cut(s)	516
MseI	TTAA	1 cut(s)	825
MslI	CAYNNNNRTG	1 cut(s)	718
MspA1I	CMGCKG	1 cut(s)	316
MspI	CCGG	3 cut(s)	155, 517, 750
MspR9I	CCNGG	3 cut(s)	379, 689, 926
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	3 cut(s)	379, 689, 926
MwoI	GCNNNNNNNGC	7 cut(s)	27, 115, 118, 124, 127, 130, 583
NarI	GGCGCC	1 cut(s)	286
NdeII	GATC	6 cut(s)	24, 275, 501, 508, 563, 798
NlaIII	CATG	3 cut(s)	73, 199, 394
NlaIV	GGNNCC	2 cut(s)	77, 287
NmuCI	GTSAC	4 cut(s)	65, 246, 548, 596
NsiI	ATGCAT	1 cut(s)	201
NspI	RCATGY	1 cut(s)	199
PaeI	GCATGC	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	3 cut(s)	158, 234, 317
PctI	GAATGC	1 cut(s)	199
PfeI	GAWTC	4 cut(s)	15, 212, 703, 746
PflMI	CCANNNNNTGG	1 cut(s)	694
PleI	GAGTC	7 cut(s)	166, 253, 451, 478, 521, 528, 603
PluTI	GGCGCC	1 cut(s)	289
PpsI	GAGTC	7 cut(s)	166, 253, 451, 478, 521, 528, 603
PpuMI	RGGWCCY	1 cut(s)	75
Psp5II	RGGWCCY	1 cut(s)	75
Psp6I	CCWGG	3 cut(s)	377, 687, 924
PspEI	GGTNACC	1 cut(s)	683
PspGI	CCWGG	3 cut(s)	377, 687, 924
PspN4I	GGNNCC	2 cut(s)	77, 287
PspPI	GGNCC	2 cut(s)	75, 223
PspPPI	RGGWCCY	1 cut(s)	75
PstNI	CAGNNNCTG	1 cut(s)	18
PsuI	RGATCY	2 cut(s)	24, 275
RsaI	GTAC	2 cut(s)	533, 780
RsaNI	GTAC	2 cut(s)	532, 779
RseI	CAYNNNNRTG	1 cut(s)	718
SaqAI	TTAA	1 cut(s)	825
Sau3AI	GATC	6 cut(s)	24, 275, 501, 508, 563, 798
Sau96I	GGNCC	2 cut(s)	75, 223
SchI	GAGTC	7 cut(s)	167, 254, 452, 479, 522, 529, 604
ScrFI	CCNGG	3 cut(s)	379, 689, 926
SduI	GDGCHC	1 cut(s)	588
SetI	ASST	9 cut(s)	77, 84, 93, 185, 339, 383, 876, 921, 930
SfaNI	GCATC	1 cut(s)	142
SfoI	GGCGCC	1 cut(s)	287
SinI	GGWCC	2 cut(s)	75, 223
SmiMI	CAYNNNNRTG	1 cut(s)	718
SphI	GCATGC	1 cut(s)	199
Sse9I	AATT	5 cut(s)	793, 826, 847, 859, 932
SsiI	CCGC	7 cut(s)	37, 110, 119, 283, 289, 314, 483
SspDI	GGCGCC	1 cut(s)	285
SspMI	CTAG	1 cut(s)	816
StyD4I	CCNGG	3 cut(s)	377, 687, 924
TaaI	ACNGT	3 cut(s)	479, 741, 943
TaqI	TCGA	5 cut(s)	179, 185, 324, 398, 511
TasI	AATT	5 cut(s)	793, 826, 847, 859, 932
TatI	WGTACW	2 cut(s)	531, 778
TauI	GCSGC	6 cut(s)	112, 121, 286, 291, 316, 486
TfiI	GAWTC	4 cut(s)	15, 212, 703, 746
Tru1I	TTAA	1 cut(s)	825
Tru9I	TTAA	1 cut(s)	825
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	4 cut(s)	65, 246, 548, 596
TseI	GCWGC	5 cut(s)	121, 124, 127, 130, 316
Tsp45I	GTSAC	4 cut(s)	65, 246, 548, 596
TspDTI	ATGAA	3 cut(s)	651, 666, 927
TspGWI	ACGGA	1 cut(s)	436
TspRI	CASTG	1 cut(s)	484
Van91I	CCANNNNNTGG	1 cut(s)	694
VpaK11BI	GGWCC	2 cut(s)	75, 223
XagI	CCTNNNNNAGG	1 cut(s)	187
XapI	RAATTY	1 cut(s)	932
XceI	RCATGY	1 cut(s)	199
XcmI	CCANNNNNNNNNTGG	1 cut(s)	761
XspI	CTAG	1 cut(s)	816
Zsp2I	ATGCAT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.