Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008314

Physical Location & Seq

Genomic Coordinates Reverse (-)

27378868 .. 27380541

Gene Structure 1674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00306520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGAGAGGCACAAGTGTAAGCTTTGCATGAGGAGCTTCTCTAATGGCAGAGCTTTAGGGGGTCATATGAGGTCTCACATGATGAACCTTCCGATTCATCAGAATCCAGAAGGGGAGGAGGAGGAAGAAGCGCCACATGATCAAATGCTCATTGATGAAATAGACTCGTTTTCAGCTTCTTCTGATGATGATGATGATGATGAAGAAGAAGAACAAGGAGAAGGGGAAGAGGAAGAGGAAGAAGATGAAGAAGGTTTGTATTACGGGCTTAGAGAAAATCCAAAGAGGAGCATTCGATTAGTAGATCATGAGTTTTCTTTTGCTGTGGATGCTGGCTCTGTTGTTCTTCAGGACAGAGAGAGTGAGACCGAGTCGTCCAAGAACCCAACTCGGAGACGATCCAAGCGGACTCGGAAATCGGCCATGTTTGATCATCATCATCATCATGACGATCATCAGCAACATCAACATCAACTTCATAATCAATACCACCAGCATCATCCAAAGCTTAATCAACATCACCTAGACGCCTTCAAGAAAATTAAGCTGAAAAACAAGATAGATTCTTGTGCTAATAATGTAGAGCCAGAACCGGTGAGTTCAATTTCTGATGCCACAGCAGAGGAAGATGTAGCCTTTTGTCTCATGATGTTATCGAGAGACAAATGGAAAAAACAAGATAAACAACAAGAGGAACAAGATGATCAAGAAGAGGATGCTGAAGTTGAATTATATAGATCCTTGGACGACAGTGATGAATCCGAGGAACAACTGATCAAGTTTCAAAGAACAAAAAGTAGTCGGGGAAAGTACAAGTGCGAAACTTGCAAGAAAGTCTTCAAATCCTATCAAGCTCTTGGCGGGCACAGAGCGAGTCACAAGAAGATTAAAGCCGCTGCTGCTGCTGCTGCTGCTAATCCAAACCCGAATCGCATTGTTTACGAGCCGGAACCCGACCCAGAAATTAACCACAATGCAGGCGGTTCTTCTTTCGTAAAAACCCATCAATGCCCTGTTTGTTTCAGAGTCTTCTCATCTGGGCAAGCGCTTGGTGGACACAAGAGATCACATGTGACAGGTTCTGCAGCCATTAATAACACTCATCATCATACTCCTGTAAAAAGCTTGGCAAAGCTAGGTGACAATATGATAGATCTTAATCTTCCTGCTCCTGTTGATGATGATGAGATGAGCCAAATCGAGATTTCTGCGGTTTCTGATGCTGAATTTGTGAACCCAATTAGGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

416

Amino Acids

47.41

Weight (kDa)

5.45

Isoelectric Point (pI)

62.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	3 - 27	1.2e-06	C2H2-type zinc finger
zf-C2H2_6	PF13912	271 - 295	2.5e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	335 - 357	9.8e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45120 AT3G60580
fragaria_vesca	FvH4_7g10990
malus_domestica	MD01G1182000.v1.1 MD02G1214100.v1.1 MD07G1114000.v1.1 MD07G1252200.v1.1
prunus_persica	Prupe.2G136700_v2.0.a1 Prupe.2G275700_v2.0.a1
pyrus_communis	pycom01g19180 pycom07g09900 pycom07g22460 pycom12659g00040
rosa_chinensis	RchiOBHm_Chr1g0348921
rosa_laevigata	RLG00000028616
rosa_multiflora	Rmu_sc0000106.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306520
rosa_rugosa	Rorug01G0198500.1
rosa_samantha	Rh1AG216000 Rh1BG182100 Rh1CG200300 Rh1DG212000
rosa_wichuraiana	Rw1G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	373
AciI	CCGC	5 cut(s)	406, 861, 894, 981, 1211
AclWI	GGATC	2 cut(s)	393, 732
AcoI	YGGCCR	1 cut(s)	420
AcsI	RAATTY	1 cut(s)	1226
AcuI	CTGAAG	2 cut(s)	332, 741
AcyI	GRCGYC	1 cut(s)	528
AfaI	GTAC	1 cut(s)	812
AfeI	AGCGCT	1 cut(s)	1047
AflIII	ACRYGT	1 cut(s)	1069
AgeI	ACCGGT	1 cut(s)	592
AgsI	TTSAA	5 cut(s)	535, 603, 728, 785, 841
AluBI	AGCT	9 cut(s)	22, 36, 53, 176, 508, 547, 854, 1125, 1135
AluI	AGCT	9 cut(s)	22, 36, 53, 176, 508, 547, 854, 1125, 1135
Alw26I	GTCTC	5 cut(s)	78, 359, 388, 647, 654
AlwI	GGATC	2 cut(s)	393, 732
AlwNI	CAGNNNCTG	1 cut(s)	1082
Aor51HI	AGCGCT	1 cut(s)	1047
AoxI	GGCC	1 cut(s)	420
ApeKI	GCWGC	7 cut(s)	896, 899, 902, 905, 908, 911, 1085
ApoI	RAATTY	1 cut(s)	1226
AseI	ATTAAT	1 cut(s)	1092
AsiGI	ACCGGT	1 cut(s)	592
Asp700I	GAANNNNTTC	1 cut(s)	836
AspLEI	GCGC	2 cut(s)	133, 1048
AsuHPI	GGTGA	3 cut(s)	512, 607, 1151
BaeGI	GKGCMC	1 cut(s)	867
BbsI	GAAGAC	2 cut(s)	829, 1021
BbvI	GCAGC	7 cut(s)	883, 886, 889, 892, 895, 898, 1097
BccI	CCATC	1 cut(s)	1011
BcgI	CGANNNNNNTGC	2 cut(s)	1190, 1224
BclI	TGATCA	4 cut(s)	139, 430, 703, 774
BcoDI	GTCTC	5 cut(s)	78, 359, 388, 647, 654
BfaI	CTAG	2 cut(s)	524, 1136
BfmI	CTRYAG	1 cut(s)	1083
BfoI	RGCGCY	2 cut(s)	134, 1049
BglII	AGATCT	1 cut(s)	1153
BisI	GCNGC	8 cut(s)	894, 897, 900, 903, 906, 909, 912, 1086
BlsI	GCNGC	8 cut(s)	895, 898, 901, 904, 907, 910, 913, 1087
BmiI	GGNNCC	1 cut(s)	951
BmsI	GCATC	5 cut(s)	319, 505, 601, 706, 1210
BpiI	GAAGAC	2 cut(s)	829, 1021
BsaBI	GATNNNNATC	2 cut(s)	435, 1158
BsaHI	GRCGYC	1 cut(s)	528
BsaI	GGTCTC	2 cut(s)	78, 359
BsaJI	CCNNGG	2 cut(s)	741, 762
BsaWI	WCCGGW	1 cut(s)	592
Bse118I	RCCGGY	1 cut(s)	592
Bse8I	GATNNNNATC	2 cut(s)	435, 1158
BseDI	CCNNGG	2 cut(s)	741, 762
BseGI	GGATG	3 cut(s)	334, 499, 721
BseJI	GATNNNNATC	2 cut(s)	435, 1158
BseRI	GAGGAG	4 cut(s)	46, 131, 134, 301
BseSI	GKGCMC	1 cut(s)	867
BseXI	GCAGC	7 cut(s)	883, 886, 889, 892, 895, 898, 1097
BshFI	GGCC	1 cut(s)	422
BshTI	ACCGGT	1 cut(s)	592
BsiSI	CCGG	2 cut(s)	593, 947
BsmAI	GTCTC	5 cut(s)	78, 359, 388, 647, 654
BsmBI	CGTCTC	1 cut(s)	388
BsmI	GAATGC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	422
Bso31I	GGTCTC	2 cut(s)	78, 359
Bsp1286I	GDGCHC	1 cut(s)	867
BspACI	CCGC	5 cut(s)	406, 861, 894, 981, 1211
BspANI	GGCC	1 cut(s)	422
BspHI	TCATGA	3 cut(s)	307, 445, 645
BspLI	GGNNCC	1 cut(s)	951
BspMAI	CTGCAG	1 cut(s)	1087
BspPI	GGATC	2 cut(s)	393, 732
BspTNI	GGTCTC	2 cut(s)	78, 359
BsrFI	RCCGGY	1 cut(s)	592
BssAI	RCCGGY	1 cut(s)	592
BssECI	CCNNGG	2 cut(s)	741, 762
BssNI	GRCGYC	1 cut(s)	528
BssT1I	CCWWGG	1 cut(s)	741
Bst4CI	ACNGT	1 cut(s)	752
Bst6I	CTCTTC	3 cut(s)	222, 228, 705
BstACI	GRCGYC	1 cut(s)	528
BstC8I	GCNNGC	4 cut(s)	334, 863, 979, 1044
BstDEI	CTNAG	1 cut(s)	269
BstF5I	GGATG	3 cut(s)	334, 499, 721
BstH2I	RGCGCY	2 cut(s)	134, 1049
BstHHI	GCGC	2 cut(s)	133, 1048
BstMAI	GTCTC	5 cut(s)	78, 359, 388, 647, 654
BstMWI	GCNNNNNNNGC	8 cut(s)	33, 329, 825, 899, 902, 905, 908, 911
BstNSI	RCATGY	1 cut(s)	1073
BstSFI	CTRYAG	1 cut(s)	1083
BstSLI	GKGCMC	1 cut(s)	867
BstV1I	GCAGC	7 cut(s)	883, 886, 889, 892, 895, 898, 1097
BstV2I	GAAGAC	2 cut(s)	829, 1021
BstX2I	RGATCY	2 cut(s)	737, 1153
BstYI	RGATCY	2 cut(s)	737, 1153
BsuRI	GGCC	1 cut(s)	422
BtsCI	GGATG	3 cut(s)	334, 499, 721
BtsIMutI	CAGTG	1 cut(s)	757
Cac8I	GCNNGC	4 cut(s)	334, 863, 979, 1044
CaiI	CAGNNNCTG	1 cut(s)	1082
CciI	TCATGA	3 cut(s)	307, 445, 645
CfoI	GCGC	2 cut(s)	133, 1048
Cfr10I	RCCGGY	1 cut(s)	592
CseI	GACGC	1 cut(s)	536
Csp6I	GTAC	1 cut(s)	811
CspAI	ACCGGT	1 cut(s)	592
CviAII	CATG	8 cut(s)	28, 79, 137, 308, 424, 446, 646, 1070
CviQI	GTAC	1 cut(s)	811
DdeI	CTNAG	1 cut(s)	269
DrdI	GACNNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	1 cut(s)	373
EaeI	YGGCCR	1 cut(s)	420
Eam1104I	CTCTTC	3 cut(s)	222, 228, 705
EarI	CTCTTC	3 cut(s)	222, 228, 705
Eco130I	CCWWGG	1 cut(s)	741
Eco31I	GGTCTC	2 cut(s)	78, 359
Eco47III	AGCGCT	1 cut(s)	1047
Eco57I	CTGAAG	2 cut(s)	332, 741
EcoT14I	CCWWGG	1 cut(s)	741
ErhI	CCWWGG	1 cut(s)	741
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	8 cut(s)	31, 82, 140, 311, 427, 449, 649, 1073
FalI	AAGNNNNNCTT	2 cut(s)	821, 853
FatI	CATG	8 cut(s)	27, 78, 136, 307, 423, 445, 645, 1069
FauI	CCCGC	1 cut(s)	854
FauNDI	CATATG	1 cut(s)	66
FbaI	TGATCA	4 cut(s)	139, 430, 703, 774
Fnu4HI	GCNGC	8 cut(s)	894, 897, 900, 903, 906, 909, 912, 1086
FokI	GGATG	3 cut(s)	341, 486, 728
Fsp4HI	GCNGC	8 cut(s)	894, 897, 900, 903, 906, 909, 912, 1086
FspBI	CTAG	2 cut(s)	524, 1136
GlaI	GCGC	2 cut(s)	132, 1047
GluI	GCNGC	8 cut(s)	894, 897, 900, 903, 906, 909, 912, 1086
HaeII	RGCGCY	2 cut(s)	134, 1049
HaeIII	GGCC	1 cut(s)	422
HapII	CCGG	2 cut(s)	593, 947
HgaI	GACGC	1 cut(s)	536
HhaI	GCGC	2 cut(s)	133, 1048
Hin1I	GRCGYC	1 cut(s)	528
Hin1II	CATG	8 cut(s)	31, 82, 140, 311, 427, 449, 649, 1073
Hin6I	GCGC	2 cut(s)	131, 1046
HinP1I	GCGC	2 cut(s)	131, 1046
HindIII	AAGCTT	3 cut(s)	20, 506, 1123
HpaII	CCGG	2 cut(s)	593, 947
HphI	GGTGA	3 cut(s)	512, 607, 1151
Hpy166II	GTNNAC	3 cut(s)	940, 1055, 1234
Hpy188I	TCNGA	9 cut(s)	93, 102, 184, 393, 414, 610, 763, 1025, 1219
Hpy188III	TCNNGA	9 cut(s)	107, 308, 350, 446, 535, 646, 657, 707, 1201
Hpy8I	GTNNAC	3 cut(s)	940, 1055, 1234
HpyAV	CCTTC	5 cut(s)	98, 104, 215, 245, 541
HpyCH4III	ACNGT	1 cut(s)	752
HpyCH4V	TGCA	4 cut(s)	27, 828, 977, 1085
HpyF10VI	GCNNNNNNNGC	8 cut(s)	33, 329, 825, 899, 902, 905, 908, 911
HpyF3I	CTNAG	1 cut(s)	269
Hsp92I	GRCGYC	1 cut(s)	528
Hsp92II	CATG	8 cut(s)	31, 82, 140, 311, 427, 449, 649, 1073
HspAI	GCGC	2 cut(s)	131, 1046
Ksp22I	TGATCA	4 cut(s)	139, 430, 703, 774
LmnI	GCTCC	3 cut(s)	33, 288, 1174
Lsp1109I	GCAGC	7 cut(s)	883, 886, 889, 892, 895, 898, 1097
LweI	GCATC	5 cut(s)	319, 505, 601, 706, 1210
MaeI	CTAG	2 cut(s)	524, 1136
MaeIII	GTNAC	3 cut(s)	875, 1072, 1139
MflI	RGATCY	2 cut(s)	737, 1153
MhlI	GDGCHC	1 cut(s)	867
MluCI	AATT	6 cut(s)	540, 603, 728, 963, 1226, 1239
MlyI	GAGTC	5 cut(s)	158, 380, 403, 883, 1035
MroXI	GAANNNNTTC	1 cut(s)	836
MseI	TTAA	6 cut(s)	510, 543, 888, 966, 1092, 1158
MslI	CAYNNNNRTG	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	896
MspI	CCGG	2 cut(s)	593, 947
Mva1269I	GAATGC	1 cut(s)	291
MwoI	GCNNNNNNNGC	8 cut(s)	33, 329, 825, 899, 902, 905, 908, 911
NdeI	CATATG	1 cut(s)	66
NlaIII	CATG	8 cut(s)	31, 82, 140, 311, 427, 449, 649, 1073
NlaIV	GGNNCC	1 cut(s)	951
NmuCI	GTSAC	3 cut(s)	875, 1072, 1139
NspI	RCATGY	1 cut(s)	1073
PagI	TCATGA	3 cut(s)	307, 445, 645
PciI	ACATGT	1 cut(s)	1069
PctI	GAATGC	1 cut(s)	291
PdmI	GAANNNNTTC	1 cut(s)	836
PfeI	GAWTC	5 cut(s)	94, 103, 563, 758, 928
PflFI	GACNNNGTC	1 cut(s)	370
PinAI	ACCGGT	1 cut(s)	592
PkrI	GCNGC	8 cut(s)	895, 898, 901, 904, 907, 910, 913, 1087
PleI	GAGTC	5 cut(s)	158, 379, 403, 882, 1034
PpsI	GAGTC	5 cut(s)	158, 379, 403, 882, 1034
PscI	ACATGT	1 cut(s)	1069
PshBI	ATTAAT	1 cut(s)	1092
PspN4I	GGNNCC	1 cut(s)	951
PstI	CTGCAG	1 cut(s)	1087
PstNI	CAGNNNCTG	1 cut(s)	1082
PsuI	RGATCY	2 cut(s)	737, 1153
PsyI	GACNNNGTC	1 cut(s)	370
RsaI	GTAC	1 cut(s)	812
RsaNI	GTAC	1 cut(s)	811
RseI	CAYNNNNRTG	1 cut(s)	444
SaqAI	TTAA	6 cut(s)	510, 543, 888, 966, 1092, 1158
SatI	GCNGC	8 cut(s)	894, 897, 900, 903, 906, 909, 912, 1086
SchI	GAGTC	5 cut(s)	158, 380, 403, 883, 1035
SduI	GDGCHC	1 cut(s)	867
SfaNI	GCATC	5 cut(s)	319, 505, 601, 706, 1210
SfcI	CTRYAG	1 cut(s)	1083
SmiMI	CAYNNNNRTG	1 cut(s)	444
Sse9I	AATT	6 cut(s)	540, 603, 728, 963, 1226, 1239
SsiI	CCGC	5 cut(s)	406, 861, 894, 981, 1211
SspMI	CTAG	2 cut(s)	524, 1136
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	1 cut(s)	752
TaqI	TCGA	3 cut(s)	295, 656, 1200
TaqII	GACCGA	1 cut(s)	383
TasI	AATT	6 cut(s)	540, 603, 728, 963, 1226, 1239
TatI	WGTACW	1 cut(s)	810
TauI	GCSGC	1 cut(s)	896
TfiI	GAWTC	5 cut(s)	94, 103, 563, 758, 928
Tru1I	TTAA	6 cut(s)	510, 543, 888, 966, 1092, 1158
Tru9I	TTAA	6 cut(s)	510, 543, 888, 966, 1092, 1158
TscAI	CASTG	1 cut(s)	757
TseFI	GTSAC	3 cut(s)	875, 1072, 1139
TseI	GCWGC	7 cut(s)	896, 899, 902, 905, 908, 911, 1085
Tsp45I	GTSAC	3 cut(s)	875, 1072, 1139
TspDTI	ATGAA	7 cut(s)	86, 98, 171, 216, 261, 467, 771
TspRI	CASTG	1 cut(s)	757
Tth111I	GACNNNGTC	1 cut(s)	370
VspI	ATTAAT	1 cut(s)	1092
XapI	RAATTY	1 cut(s)	1226
XceI	RCATGY	1 cut(s)	1073
XmnI	GAANNNNTTC	1 cut(s)	836
XspI	CTAG	2 cut(s)	524, 1136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.