Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000106.1

Orthogroup ID

OG0008314

Physical Location & Seq

Genomic Coordinates Forward (+)

28952 .. 30220

Gene Structure 1269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000106.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

atggagaggcacaagtgtaagctttgcatgaggagcttctctaatggtagagctttagggggtcatatgaggtctcacatgatgaaccttccgattcatcagaatccagaagggggggaggaggaggaggaggaggaggaggaggaagaagcgccacatgatcaaatgctcattgatgaaatagactcggtttcagcttcttctgatgatgatgatgatgaagaagaagaacaaggagaaggggaggaggaagaagaagaagatgaagaaggtttgtattacgggcttagagaaaatccaaagaggagcattcgattagtagatcatgagttttcttttgctgtggatgctggctctgttgttcttcaggacagagagagtgagaccgagtcgtccaagaacccaactcggagacggtccaagcggactcggaaatcggccatgtttgatcatcatcatcatcatgacgatcatcagcaacatcaacatcaacttcataatcaataccaccagcatgatccaaagcttaatcaacatcacctagaagccttcaagaaaattaagctgaaaaacaagatagattcttgtgctaataatgtagagccagaaccggtgagttcaatttctgatgccacaacagaggaagatgtagccttttgtctcatgatgttatcgagagacaaatggaaaaaacaagataaacaacaagatgatcaagacgaagatgctgaagttgaattatatagatccctggacgacagtgatgaatccgaggaacaactgatcaagtttcaaagaacaaaaagtagtcggggaaagtacaggtgcgaaacttgcaagaaagtcttcaaatcctatcaagctcttggcgggcacagagcgagtcacaagaagattaaagccgccgccgccgccgccgccgctgctgctaatccaaacccgaatcgcattgtttacgagccccaacccgacccaaaaattaaccacaatgcaggcagttcttctttcgcaaaaacccatcaatgccctgtttgtttcagagtcttctcatctgggcaagcgcttggtggacacaagagatcacatgtgacaggctctgcagccattaataacactcatcatcatactcctcctgtaaaaagcttggcaaagctaggtgacaatatgatagatcttaatcttcctgctcctgttgatgatgatgagatgagccaaatcgagatttctgcggtttctgatgctgaatttgtgaacccaattaggcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

422

Amino Acids

47.96

Weight (kDa)

5.38

Isoelectric Point (pI)

64.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45120 AT3G60580
fragaria_vesca	FvH4_7g10990
malus_domestica	MD01G1182000.v1.1 MD02G1214100.v1.1 MD07G1114000.v1.1 MD07G1252200.v1.1
prunus_persica	Prupe.2G136700_v2.0.a1 Prupe.2G275700_v2.0.a1
pyrus_communis	pycom01g19180 pycom07g09900 pycom07g22460 pycom12659g00040
rosa_chinensis	RchiOBHm_Chr1g0348921
rosa_laevigata	RLG00000028616
rosa_multiflora	Rmu_sc0000106.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306520
rosa_rugosa	Rorug01G0198500.1
rosa_samantha	Rh1AG216000 Rh1BG182100 Rh1CG200300 Rh1DG212000
rosa_wichuraiana	Rw1G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	391
AclWI	GGATC	2 cut(s)	512, 741
AcoI	YGGCCR	1 cut(s)	438
AcsI	RAATTY	1 cut(s)	1244
AcuI	CTGAAG	2 cut(s)	350, 750
AfaI	GTAC	1 cut(s)	821
AfeI	AGCGCT	1 cut(s)	1062
AfiI	CCNNNNNNNGG	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	1084
AgeI	ACCGGT	1 cut(s)	610
AgsI	TTSAA	5 cut(s)	553, 621, 737, 794, 850
AjnI	CCWGG	1 cut(s)	750
AluBI	AGCT	9 cut(s)	22, 36, 53, 197, 526, 565, 863, 1143, 1153
AluI	AGCT	9 cut(s)	22, 36, 53, 197, 526, 565, 863, 1143, 1153
Alw26I	GTCTC	5 cut(s)	78, 377, 406, 665, 672
AlwI	GGATC	2 cut(s)	512, 741
AlwNI	CAGNNNCTG	1 cut(s)	1097
Aor51HI	AGCGCT	1 cut(s)	1062
AoxI	GGCC	1 cut(s)	438
ApeKI	GCWGC	3 cut(s)	923, 926, 1100
ApoI	RAATTY	1 cut(s)	1244
AseI	ATTAAT	1 cut(s)	1107
AsiGI	ACCGGT	1 cut(s)	610
Asp700I	GAANNNNTTC	1 cut(s)	845
AspLEI	GCGC	2 cut(s)	154, 1063
AspS9I	GGNCC	1 cut(s)	417
AsuHPI	GGTGA	3 cut(s)	530, 625, 1169
AvaII	GGWCC	1 cut(s)	417
BaeGI	GKGCMC	1 cut(s)	876
BanII	GRGCYC	1 cut(s)	963
BbsI	GAAGAC	2 cut(s)	838, 1036
BbvI	GCAGC	3 cut(s)	910, 913, 1112
BccI	CCATC	1 cut(s)	1026
BcgI	CGANNNNNNTGC	2 cut(s)	1208, 1242
BciT130I	CCWGG	1 cut(s)	752
BclI	TGATCA	4 cut(s)	160, 448, 712, 783
BcoDI	GTCTC	5 cut(s)	78, 377, 406, 665, 672
BfaI	CTAG	2 cut(s)	542, 1154
BfmI	CTRYAG	1 cut(s)	1098
BfoI	RGCGCY	2 cut(s)	155, 1064
BglII	AGATCT	1 cut(s)	1171
Bme1390I	CCNGG	1 cut(s)	752
Bme18I	GGWCC	1 cut(s)	417
BmgT120I	GGNCC	1 cut(s)	417
BmrFI	CCNGG	1 cut(s)	752
BmsI	GCATC	4 cut(s)	337, 619, 715, 1228
BpiI	GAAGAC	2 cut(s)	838, 1036
BsaBI	GATNNNNATC	2 cut(s)	453, 1176
BsaI	GGTCTC	2 cut(s)	78, 377
BsaJI	CCNNGG	2 cut(s)	750, 771
BsaWI	WCCGGW	1 cut(s)	610
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse118I	RCCGGY	1 cut(s)	610
Bse8I	GATNNNNATC	2 cut(s)	453, 1176
BseBI	CCWGG	1 cut(s)	752
BseDI	CCNNGG	2 cut(s)	750, 771
BseGI	GGATG	1 cut(s)	352
BseJI	GATNNNNATC	2 cut(s)	453, 1176
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	876
BseXI	GCAGC	3 cut(s)	910, 913, 1112
BshFI	GGCC	1 cut(s)	440
BshTI	ACCGGT	1 cut(s)	610
BsiSI	CCGG	1 cut(s)	611
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	5 cut(s)	78, 377, 406, 665, 672
BsmBI	CGTCTC	1 cut(s)	406
BsmI	GAATGC	1 cut(s)	309
BsnI	GGCC	1 cut(s)	440
Bso31I	GGTCTC	2 cut(s)	78, 377
Bsp1286I	GDGCHC	2 cut(s)	876, 963
BspANI	GGCC	1 cut(s)	440
BspHI	TCATGA	3 cut(s)	325, 463, 663
BspMAI	CTGCAG	1 cut(s)	1102
BspPI	GGATC	2 cut(s)	512, 741
BspTNI	GGTCTC	2 cut(s)	78, 377
BsrFI	RCCGGY	1 cut(s)	610
BssAI	RCCGGY	1 cut(s)	610
BssECI	CCNNGG	2 cut(s)	750, 771
Bst2UI	CCWGG	1 cut(s)	752
Bst4CI	ACNGT	2 cut(s)	417, 761
BstC8I	GCNNGC	4 cut(s)	352, 872, 994, 1059
BstDEI	CTNAG	1 cut(s)	287
BstF5I	GGATG	1 cut(s)	352
BstH2I	RGCGCY	2 cut(s)	155, 1064
BstHHI	GCGC	2 cut(s)	154, 1063
BstMAI	GTCTC	5 cut(s)	78, 377, 406, 665, 672
BstNI	CCWGG	1 cut(s)	752
BstNSI	RCATGY	1 cut(s)	1088
BstSCI	CCNGG	1 cut(s)	750
BstSFI	CTRYAG	1 cut(s)	1098
BstSLI	GKGCMC	1 cut(s)	876
BstV1I	GCAGC	3 cut(s)	910, 913, 1112
BstV2I	GAAGAC	2 cut(s)	838, 1036
BstX2I	RGATCY	2 cut(s)	746, 1171
BstYI	RGATCY	2 cut(s)	746, 1171
BsuRI	GGCC	1 cut(s)	440
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	766
Cac8I	GCNNGC	4 cut(s)	352, 872, 994, 1059
CaiI	CAGNNNCTG	1 cut(s)	1097
CciI	TCATGA	3 cut(s)	325, 463, 663
CfoI	GCGC	2 cut(s)	154, 1063
Cfr10I	RCCGGY	1 cut(s)	610
Cfr13I	GGNCC	1 cut(s)	417
Csp6I	GTAC	1 cut(s)	820
CspAI	ACCGGT	1 cut(s)	610
CviAII	CATG	9 cut(s)	28, 79, 158, 326, 442, 464, 515, 664, 1085
CviQI	GTAC	1 cut(s)	820
DdeI	CTNAG	1 cut(s)	287
DrdI	GACNNNNNNGTC	1 cut(s)	391
DseDI	GACNNNNNNGTC	1 cut(s)	391
EaeI	YGGCCR	1 cut(s)	438
Eco24I	GRGCYC	1 cut(s)	963
Eco31I	GGTCTC	2 cut(s)	78, 377
Eco47I	GGWCC	1 cut(s)	417
Eco47III	AGCGCT	1 cut(s)	1062
Eco57I	CTGAAG	2 cut(s)	350, 750
EcoRII	CCWGG	1 cut(s)	750
EcoT38I	GRGCYC	1 cut(s)	963
Esp3I	CGTCTC	1 cut(s)	406
FaeI	CATG	9 cut(s)	31, 82, 161, 329, 445, 467, 518, 667, 1088
FalI	AAGNNNNNCTT	2 cut(s)	830, 862
FatI	CATG	9 cut(s)	27, 78, 157, 325, 441, 463, 514, 663, 1084
FauI	CCCGC	1 cut(s)	863
FauNDI	CATATG	1 cut(s)	66
FbaI	TGATCA	4 cut(s)	160, 448, 712, 783
FokI	GGATG	1 cut(s)	359
FriOI	GRGCYC	1 cut(s)	963
FspBI	CTAG	2 cut(s)	542, 1154
GlaI	GCGC	2 cut(s)	153, 1062
HaeII	RGCGCY	2 cut(s)	155, 1064
HaeIII	GGCC	1 cut(s)	440
HapII	CCGG	1 cut(s)	611
HhaI	GCGC	2 cut(s)	154, 1063
Hin1II	CATG	9 cut(s)	31, 82, 161, 329, 445, 467, 518, 667, 1088
Hin6I	GCGC	2 cut(s)	152, 1061
HinP1I	GCGC	2 cut(s)	152, 1061
HindIII	AAGCTT	3 cut(s)	20, 524, 1141
HpaII	CCGG	1 cut(s)	611
HphI	GGTGA	3 cut(s)	530, 625, 1169
Hpy166II	GTNNAC	3 cut(s)	955, 1070, 1252
Hpy188I	TCNGA	9 cut(s)	93, 102, 205, 411, 432, 628, 772, 1040, 1237
Hpy188III	TCNNGA	9 cut(s)	107, 326, 368, 464, 553, 664, 675, 716, 1219
Hpy8I	GTNNAC	3 cut(s)	955, 1070, 1252
HpyAV	CCTTC	5 cut(s)	98, 104, 233, 263, 559
HpyCH4III	ACNGT	2 cut(s)	417, 761
HpyCH4V	TGCA	4 cut(s)	27, 837, 992, 1100
HpyF3I	CTNAG	1 cut(s)	287
Hsp92II	CATG	9 cut(s)	31, 82, 161, 329, 445, 467, 518, 667, 1088
HspAI	GCGC	2 cut(s)	152, 1061
Ksp22I	TGATCA	4 cut(s)	160, 448, 712, 783
LmnI	GCTCC	3 cut(s)	33, 306, 1192
Lsp1109I	GCAGC	3 cut(s)	910, 913, 1112
LweI	GCATC	4 cut(s)	337, 619, 715, 1228
MaeI	CTAG	2 cut(s)	542, 1154
MaeIII	GTNAC	3 cut(s)	884, 1087, 1157
MflI	RGATCY	2 cut(s)	746, 1171
MhlI	GDGCHC	2 cut(s)	876, 963
MluCI	AATT	6 cut(s)	558, 621, 737, 978, 1244, 1257
MlyI	GAGTC	5 cut(s)	179, 398, 421, 892, 1050
MroXI	GAANNNNTTC	1 cut(s)	845
MseI	TTAA	6 cut(s)	528, 561, 897, 981, 1107, 1176
MslI	CAYNNNNRTG	2 cut(s)	462, 513
MspA1I	CMGCKG	1 cut(s)	923
MspI	CCGG	1 cut(s)	611
MspR9I	CCNGG	1 cut(s)	752
Mva1269I	GAATGC	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	752
NdeI	CATATG	1 cut(s)	66
NlaIII	CATG	9 cut(s)	31, 82, 161, 329, 445, 467, 518, 667, 1088
NmuCI	GTSAC	3 cut(s)	884, 1087, 1157
NspI	RCATGY	1 cut(s)	1088
PagI	TCATGA	3 cut(s)	325, 463, 663
PciI	ACATGT	1 cut(s)	1084
PctI	GAATGC	1 cut(s)	309
PdmI	GAANNNNTTC	1 cut(s)	845
PfeI	GAWTC	5 cut(s)	94, 103, 581, 767, 943
PflFI	GACNNNGTC	1 cut(s)	388
PinAI	ACCGGT	1 cut(s)	610
PleI	GAGTC	5 cut(s)	179, 397, 421, 891, 1049
PpsI	GAGTC	5 cut(s)	179, 397, 421, 891, 1049
PscI	ACATGT	1 cut(s)	1084
PshBI	ATTAAT	1 cut(s)	1107
Psp6I	CCWGG	1 cut(s)	750
PspGI	CCWGG	1 cut(s)	750
PspPI	GGNCC	1 cut(s)	417
PstI	CTGCAG	1 cut(s)	1102
PstNI	CAGNNNCTG	1 cut(s)	1097
PsuI	RGATCY	2 cut(s)	746, 1171
PsyI	GACNNNGTC	1 cut(s)	388
RsaI	GTAC	1 cut(s)	821
RsaNI	GTAC	1 cut(s)	820
RseI	CAYNNNNRTG	2 cut(s)	462, 513
SaqAI	TTAA	6 cut(s)	528, 561, 897, 981, 1107, 1176
Sau96I	GGNCC	1 cut(s)	417
SchI	GAGTC	5 cut(s)	179, 398, 421, 892, 1050
ScrFI	CCNGG	1 cut(s)	752
SduI	GDGCHC	2 cut(s)	876, 963
SfaNI	GCATC	4 cut(s)	337, 619, 715, 1228
SfcI	CTRYAG	1 cut(s)	1098
SinI	GGWCC	1 cut(s)	417
SmiMI	CAYNNNNRTG	2 cut(s)	462, 513
Sse9I	AATT	6 cut(s)	558, 621, 737, 978, 1244, 1257
SspMI	CTAG	2 cut(s)	542, 1154
StyD4I	CCNGG	1 cut(s)	750
TaaI	ACNGT	2 cut(s)	417, 761
TaqI	TCGA	3 cut(s)	313, 674, 1218
TaqII	GACCGA	1 cut(s)	401
TasI	AATT	6 cut(s)	558, 621, 737, 978, 1244, 1257
TatI	WGTACW	1 cut(s)	819
TauI	GCSGC	7 cut(s)	905, 908, 911, 914, 917, 920, 923
TfiI	GAWTC	5 cut(s)	94, 103, 581, 767, 943
Tru1I	TTAA	6 cut(s)	528, 561, 897, 981, 1107, 1176
Tru9I	TTAA	6 cut(s)	528, 561, 897, 981, 1107, 1176
TscAI	CASTG	1 cut(s)	766
TseFI	GTSAC	3 cut(s)	884, 1087, 1157
TseI	GCWGC	3 cut(s)	923, 926, 1100
Tsp45I	GTSAC	3 cut(s)	884, 1087, 1157
TspDTI	ATGAA	7 cut(s)	86, 98, 192, 234, 279, 485, 780
TspRI	CASTG	1 cut(s)	766
Tth111I	GACNNNGTC	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	417
VspI	ATTAAT	1 cut(s)	1107
XapI	RAATTY	1 cut(s)	1244
XceI	RCATGY	1 cut(s)	1088
XmnI	GAANNNNTTC	1 cut(s)	845
XspI	CTAG	2 cut(s)	542, 1154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.