Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0008314

Physical Location & Seq

Genomic Coordinates Forward (+)

41232576 .. 41237508

Gene Structure 4933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG212000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGAGAGGCACAAGTGTAAGCTTTGCATGAGGAGCTTCTCTAATGGCAGAGCTTTAGGGGGTCATATGAGGTCTCACATGATGAACCTTCCGATTCATCAGAATCCAGAAGGGGAGGAGGAGGAAGAAGCGCCACATGATCAAATGCTCATTGATGAAATAGACTCGGTTTCAGCTTCTTCTTCTGATGATGATGATGAAGAAGAAGAACAAGGAGAAGGGGAAGAGGAAGAAGACGAAGATGAAGAAGGTTTGTATTACGGGCTTAGAGAAAATCCAAAGAGGAGCATTCGATTAGTAGATCATGAGTTTTCTTTTGCTGTGGATGCTGGCTCTGTTGTTCTTCAGGACAGAGAGAGTGAGACCGAGTCGTCCAAGAACCCAACTCGGAGACGATCCAAGCGGACTCGGAAATCGACCATGTTTGATCATCATCATCATCATCATCATGACGATCATCAGCAACATCAACATCAACATCAACATCAACTTCATAATCAATACCACCAGCATGATCCAAAGCTTAATCAACATCACCTAGAAGCCTTCAAGAAAATTAAGCTGAAAAACAAGATAGATTCTTGTGCTAATAATGTAGAGCCAGAACCGGTGAGTTCAATTTCTGATGCCACAACAGAGGAAGATGTAGCCTTTTGTCTCATGATGTTATCGAGAGACAAATGGAAAAAACAAGATAAACAACAAGAGGAACAAGATGATCAAGAAGAGGATGCTGAAGTTGAATTATATAGATCCTTGGACGACAGTGATGAATCCGAGGAACAACTGATCAAGTTTCAAAGAACAAAAAGTAGTCGGGGAAAGTACAAGTGCGAAACTTGCAAGAAAGTCTTCAAATCCTATCAAGCTCTTGGCGGGCACAGAGCGAGTCACAAGAAGATTAAAGCCGCCGCCGCTGCTGCTGCTAATCCAAACCCGAATCGCATTGTTTACGAGCCCGAACCCGACCCAAAAATTAACCACAATGCAGGCAGTTCTTCTTTCGCAAAAACCCATCAATGCCCTGTTTGTTTCAGAGTCTTCTCATCTGGGCAAGCGCTTGGTGGACACAAGAGATCACATGTGACAGGTTCTGCAGCCATTAATAACACTCATCGTCATACTCCTCCTGTAAAAAGCTTGGCAAAGCTAGGTGACAATATGATAGATCTTAATCTTCCTGCTCCTGTTGATGATGATGAGATGAGCCAAATCGAGATTTCTGCGGTTTCTGATGCTGAATTTGTGAACCCAATTAGGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

421

Amino Acids

48.1

Weight (kDa)

5.68

Isoelectric Point (pI)

61.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	3 - 27	1.2e-06	C2H2-type zinc finger
zf-C2H2_6	PF13912	276 - 300	2.5e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	339 - 361	9.9e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45120 AT3G60580
fragaria_vesca	FvH4_7g10990
malus_domestica	MD01G1182000.v1.1 MD02G1214100.v1.1 MD07G1114000.v1.1 MD07G1252200.v1.1
prunus_persica	Prupe.2G136700_v2.0.a1 Prupe.2G275700_v2.0.a1
pyrus_communis	pycom01g19180 pycom07g09900 pycom07g22460 pycom12659g00040
rosa_chinensis	RchiOBHm_Chr1g0348921
rosa_laevigata	RLG00000028616
rosa_multiflora	Rmu_sc0000106.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306520
rosa_rugosa	Rorug01G0198500.1
rosa_samantha	Rh1AG216000 Rh1BG182100 Rh1CG200300 Rh1DG212000
rosa_wichuraiana	Rw1G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	370
AciI	CCGC	6 cut(s)	403, 876, 909, 912, 915, 1226
AclWI	GGATC	3 cut(s)	390, 509, 747
AcsI	RAATTY	1 cut(s)	1241
AcuI	CTGAAG	2 cut(s)	329, 756
AfaI	GTAC	1 cut(s)	827
AfeI	AGCGCT	1 cut(s)	1059
AflIII	ACRYGT	1 cut(s)	1081
AgeI	ACCGGT	1 cut(s)	607
AgsI	TTSAA	5 cut(s)	550, 618, 743, 800, 856
AluBI	AGCT	9 cut(s)	22, 36, 53, 176, 523, 562, 869, 1140, 1150
AluI	AGCT	9 cut(s)	22, 36, 53, 176, 523, 562, 869, 1140, 1150
Alw26I	GTCTC	5 cut(s)	78, 356, 385, 662, 669
AlwI	GGATC	3 cut(s)	390, 509, 747
AlwNI	CAGNNNCTG	1 cut(s)	1094
Aor51HI	AGCGCT	1 cut(s)	1059
ApeKI	GCWGC	4 cut(s)	917, 920, 923, 1097
ApoI	RAATTY	1 cut(s)	1241
AseI	ATTAAT	1 cut(s)	1104
AsiGI	ACCGGT	1 cut(s)	607
Asp700I	GAANNNNTTC	1 cut(s)	851
AspLEI	GCGC	2 cut(s)	133, 1060
AsuHPI	GGTGA	3 cut(s)	527, 622, 1166
BaeGI	GKGCMC	1 cut(s)	882
BanII	GRGCYC	1 cut(s)	960
BbsI	GAAGAC	3 cut(s)	240, 844, 1033
BbvI	GCAGC	4 cut(s)	904, 907, 910, 1109
BccI	CCATC	1 cut(s)	1023
BcgI	CGANNNNNNTGC	2 cut(s)	1205, 1239
BclI	TGATCA	4 cut(s)	139, 427, 718, 789
BcoDI	GTCTC	5 cut(s)	78, 356, 385, 662, 669
BfaI	CTAG	2 cut(s)	539, 1151
BfmI	CTRYAG	1 cut(s)	1095
BfoI	RGCGCY	2 cut(s)	134, 1061
BglII	AGATCT	1 cut(s)	1168
BisI	GCNGC	7 cut(s)	909, 912, 915, 918, 921, 924, 1098
BlsI	GCNGC	7 cut(s)	910, 913, 916, 919, 922, 925, 1099
BmsI	GCATC	4 cut(s)	316, 616, 721, 1225
BpiI	GAAGAC	3 cut(s)	240, 844, 1033
BsaBI	GATNNNNATC	2 cut(s)	432, 1173
BsaI	GGTCTC	2 cut(s)	78, 356
BsaJI	CCNNGG	2 cut(s)	756, 777
BsaWI	WCCGGW	1 cut(s)	607
Bse118I	RCCGGY	1 cut(s)	607
Bse8I	GATNNNNATC	2 cut(s)	432, 1173
BseDI	CCNNGG	2 cut(s)	756, 777
BseGI	GGATG	2 cut(s)	331, 736
BseJI	GATNNNNATC	2 cut(s)	432, 1173
BseRI	GAGGAG	5 cut(s)	46, 131, 134, 298, 1116
BseSI	GKGCMC	1 cut(s)	882
BseXI	GCAGC	4 cut(s)	904, 907, 910, 1109
BshTI	ACCGGT	1 cut(s)	607
BsiSI	CCGG	1 cut(s)	608
BsmAI	GTCTC	5 cut(s)	78, 356, 385, 662, 669
BsmBI	CGTCTC	1 cut(s)	385
BsmI	GAATGC	1 cut(s)	288
Bso31I	GGTCTC	2 cut(s)	78, 356
Bsp1286I	GDGCHC	2 cut(s)	882, 960
BspACI	CCGC	6 cut(s)	403, 876, 909, 912, 915, 1226
BspHI	TCATGA	3 cut(s)	304, 448, 660
BspMAI	CTGCAG	1 cut(s)	1099
BspPI	GGATC	3 cut(s)	390, 509, 747
BspTNI	GGTCTC	2 cut(s)	78, 356
BsrFI	RCCGGY	1 cut(s)	607
BssAI	RCCGGY	1 cut(s)	607
BssECI	CCNNGG	2 cut(s)	756, 777
BssT1I	CCWWGG	1 cut(s)	756
Bst4CI	ACNGT	1 cut(s)	767
Bst6I	CTCTTC	2 cut(s)	219, 720
BstC8I	GCNNGC	4 cut(s)	331, 878, 991, 1056
BstDEI	CTNAG	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	331, 736
BstH2I	RGCGCY	2 cut(s)	134, 1061
BstHHI	GCGC	2 cut(s)	133, 1060
BstMAI	GTCTC	5 cut(s)	78, 356, 385, 662, 669
BstMWI	GCNNNNNNNGC	7 cut(s)	33, 326, 840, 914, 917, 920, 923
BstNSI	RCATGY	1 cut(s)	1085
BstSFI	CTRYAG	1 cut(s)	1095
BstSLI	GKGCMC	1 cut(s)	882
BstV1I	GCAGC	4 cut(s)	904, 907, 910, 1109
BstV2I	GAAGAC	3 cut(s)	240, 844, 1033
BstX2I	RGATCY	2 cut(s)	752, 1168
BstYI	RGATCY	2 cut(s)	752, 1168
BtsCI	GGATG	2 cut(s)	331, 736
BtsIMutI	CAGTG	1 cut(s)	772
Cac8I	GCNNGC	4 cut(s)	331, 878, 991, 1056
CaiI	CAGNNNCTG	1 cut(s)	1094
CciI	TCATGA	3 cut(s)	304, 448, 660
CfoI	GCGC	2 cut(s)	133, 1060
Cfr10I	RCCGGY	1 cut(s)	607
Csp6I	GTAC	1 cut(s)	826
CspAI	ACCGGT	1 cut(s)	607
CviAII	CATG	9 cut(s)	28, 79, 137, 305, 421, 449, 512, 661, 1082
CviQI	GTAC	1 cut(s)	826
DdeI	CTNAG	1 cut(s)	266
DrdI	GACNNNNNNGTC	1 cut(s)	370
DseDI	GACNNNNNNGTC	1 cut(s)	370
Eam1104I	CTCTTC	2 cut(s)	219, 720
EarI	CTCTTC	2 cut(s)	219, 720
Eco130I	CCWWGG	1 cut(s)	756
Eco24I	GRGCYC	1 cut(s)	960
Eco31I	GGTCTC	2 cut(s)	78, 356
Eco47III	AGCGCT	1 cut(s)	1059
Eco57I	CTGAAG	2 cut(s)	329, 756
EcoT14I	CCWWGG	1 cut(s)	756
EcoT38I	GRGCYC	1 cut(s)	960
ErhI	CCWWGG	1 cut(s)	756
Esp3I	CGTCTC	1 cut(s)	385
FaeI	CATG	9 cut(s)	31, 82, 140, 308, 424, 452, 515, 664, 1085
FalI	AAGNNNNNCTT	2 cut(s)	836, 868
FatI	CATG	9 cut(s)	27, 78, 136, 304, 420, 448, 511, 660, 1081
FauI	CCCGC	1 cut(s)	869
FauNDI	CATATG	1 cut(s)	66
FbaI	TGATCA	4 cut(s)	139, 427, 718, 789
Fnu4HI	GCNGC	7 cut(s)	909, 912, 915, 918, 921, 924, 1098
FokI	GGATG	2 cut(s)	338, 743
FriOI	GRGCYC	1 cut(s)	960
Fsp4HI	GCNGC	7 cut(s)	909, 912, 915, 918, 921, 924, 1098
FspBI	CTAG	2 cut(s)	539, 1151
GlaI	GCGC	2 cut(s)	132, 1059
GluI	GCNGC	7 cut(s)	909, 912, 915, 918, 921, 924, 1098
HaeII	RGCGCY	2 cut(s)	134, 1061
HapII	CCGG	1 cut(s)	608
HhaI	GCGC	2 cut(s)	133, 1060
Hin1II	CATG	9 cut(s)	31, 82, 140, 308, 424, 452, 515, 664, 1085
Hin6I	GCGC	2 cut(s)	131, 1058
HinP1I	GCGC	2 cut(s)	131, 1058
HindIII	AAGCTT	3 cut(s)	20, 521, 1138
HpaII	CCGG	1 cut(s)	608
HphI	GGTGA	3 cut(s)	527, 622, 1166
Hpy166II	GTNNAC	3 cut(s)	952, 1067, 1249
Hpy188I	TCNGA	9 cut(s)	93, 102, 187, 390, 411, 625, 778, 1037, 1234
Hpy188III	TCNNGA	9 cut(s)	107, 305, 347, 449, 550, 661, 672, 722, 1216
Hpy8I	GTNNAC	3 cut(s)	952, 1067, 1249
HpyAV	CCTTC	5 cut(s)	98, 104, 212, 242, 556
HpyCH4III	ACNGT	1 cut(s)	767
HpyCH4V	TGCA	4 cut(s)	27, 843, 989, 1097
HpyF10VI	GCNNNNNNNGC	7 cut(s)	33, 326, 840, 914, 917, 920, 923
HpyF3I	CTNAG	1 cut(s)	266
Hsp92II	CATG	9 cut(s)	31, 82, 140, 308, 424, 452, 515, 664, 1085
HspAI	GCGC	2 cut(s)	131, 1058
Ksp22I	TGATCA	4 cut(s)	139, 427, 718, 789
LmnI	GCTCC	3 cut(s)	33, 285, 1189
Lsp1109I	GCAGC	4 cut(s)	904, 907, 910, 1109
LweI	GCATC	4 cut(s)	316, 616, 721, 1225
MaeI	CTAG	2 cut(s)	539, 1151
MaeIII	GTNAC	3 cut(s)	890, 1084, 1154
MflI	RGATCY	2 cut(s)	752, 1168
MhlI	GDGCHC	2 cut(s)	882, 960
MluCI	AATT	6 cut(s)	555, 618, 743, 975, 1241, 1254
MlyI	GAGTC	5 cut(s)	158, 377, 400, 898, 1047
MroXI	GAANNNNTTC	1 cut(s)	851
MseI	TTAA	6 cut(s)	525, 558, 903, 978, 1104, 1173
MslI	CAYNNNNRTG	2 cut(s)	447, 510
MspA1I	CMGCKG	1 cut(s)	917
MspI	CCGG	1 cut(s)	608
Mva1269I	GAATGC	1 cut(s)	288
MwoI	GCNNNNNNNGC	7 cut(s)	33, 326, 840, 914, 917, 920, 923
NdeI	CATATG	1 cut(s)	66
NlaIII	CATG	9 cut(s)	31, 82, 140, 308, 424, 452, 515, 664, 1085
NmuCI	GTSAC	3 cut(s)	890, 1084, 1154
NspI	RCATGY	1 cut(s)	1085
PagI	TCATGA	3 cut(s)	304, 448, 660
PciI	ACATGT	1 cut(s)	1081
PctI	GAATGC	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	851
PfeI	GAWTC	5 cut(s)	94, 103, 578, 773, 940
PflFI	GACNNNGTC	1 cut(s)	367
PinAI	ACCGGT	1 cut(s)	607
PkrI	GCNGC	7 cut(s)	910, 913, 916, 919, 922, 925, 1099
PleI	GAGTC	5 cut(s)	158, 376, 400, 897, 1046
PpsI	GAGTC	5 cut(s)	158, 376, 400, 897, 1046
PscI	ACATGT	1 cut(s)	1081
PshBI	ATTAAT	1 cut(s)	1104
PstI	CTGCAG	1 cut(s)	1099
PstNI	CAGNNNCTG	1 cut(s)	1094
PsuI	RGATCY	2 cut(s)	752, 1168
PsyI	GACNNNGTC	1 cut(s)	367
RsaI	GTAC	1 cut(s)	827
RsaNI	GTAC	1 cut(s)	826
RseI	CAYNNNNRTG	2 cut(s)	447, 510
SaqAI	TTAA	6 cut(s)	525, 558, 903, 978, 1104, 1173
SatI	GCNGC	7 cut(s)	909, 912, 915, 918, 921, 924, 1098
SchI	GAGTC	5 cut(s)	158, 377, 400, 898, 1047
SduI	GDGCHC	2 cut(s)	882, 960
SfaNI	GCATC	4 cut(s)	316, 616, 721, 1225
SfcI	CTRYAG	1 cut(s)	1095
SmiMI	CAYNNNNRTG	2 cut(s)	447, 510
Sse9I	AATT	6 cut(s)	555, 618, 743, 975, 1241, 1254
SsiI	CCGC	6 cut(s)	403, 876, 909, 912, 915, 1226
SspMI	CTAG	2 cut(s)	539, 1151
StyI	CCWWGG	1 cut(s)	756
TaaI	ACNGT	1 cut(s)	767
TaqI	TCGA	4 cut(s)	292, 416, 671, 1215
TaqII	GACCGA	1 cut(s)	380
TasI	AATT	6 cut(s)	555, 618, 743, 975, 1241, 1254
TatI	WGTACW	1 cut(s)	825
TauI	GCSGC	3 cut(s)	911, 914, 917
TfiI	GAWTC	5 cut(s)	94, 103, 578, 773, 940
Tru1I	TTAA	6 cut(s)	525, 558, 903, 978, 1104, 1173
Tru9I	TTAA	6 cut(s)	525, 558, 903, 978, 1104, 1173
TscAI	CASTG	1 cut(s)	772
TseFI	GTSAC	3 cut(s)	890, 1084, 1154
TseI	GCWGC	4 cut(s)	917, 920, 923, 1097
Tsp45I	GTSAC	3 cut(s)	890, 1084, 1154
TspDTI	ATGAA	7 cut(s)	86, 98, 171, 213, 258, 482, 786
TspRI	CASTG	1 cut(s)	772
Tth111I	GACNNNGTC	1 cut(s)	367
VspI	ATTAAT	1 cut(s)	1104
XapI	RAATTY	1 cut(s)	1241
XceI	RCATGY	1 cut(s)	1085
XmnI	GAANNNNTTC	1 cut(s)	851
XspI	CTAG	2 cut(s)	539, 1151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.