Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008314

Physical Location & Seq

Genomic Coordinates Reverse (-)

25131920 .. 25133179

Gene Structure 1260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028616

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGAGAGGCACAAGTGTAAGCTTTGCATGAGGGGCTTTTCTAATGGCAGAGCTTTAGGGGGTCATATGAGGTCTCACATGATGAACCTTCCGATTCATCAGAATCCAGAAGGGGGGGAGGAGGAGGAAGAAGCGCCACATGATCAAATGCTCATTGATGAAATAGACTCGGTTTCAGCTTCTTCTTCTGATGATGATGATGAAGAAGAAGAACAGGGAGAAGGGGATGAGGAGGAAGAAGAAGAAGAAGAAGATGATGAAGAAGGCTTGTATTACGGGCTTAGAGAAAATCCAAAGAGGAGCATTCGATTAGTAGATCATGAGTTTTCTTTTGCTGTGGATGCTGGCTCTGTTGTTCTTCAGGACAGAGAGAGTGAGACCGAGTCGTCCAAGAACCCAACTCGGAGACGATCCAAGCGGACGCGGAAATCGGCCATGTTTGATCATCATCATCATCATGACGATCATCAACAACATCAACATCAACTTCATAATCAATACCACCAGCATCATCCAAAGCTTAATCAACATCACCTAGAAGCCTTCAAGAAAATTAAGCTGAAAAACAAGATAGATTCTTGTGCGAATAATGTAGAGCCAGAACCGGTGAGTTCAATTTCTGATGCCACAACAGAGGAAGATGTAGCCTTTTGTCTCATGATGTTATCGAGAGACAAATGGAAAAAACAAGATAAACAACAAGAGGAACAAGATGATCAAGACGAGGATGCTGAAGTTGAATTGTATAGATCCTTGGACGACAGTGATGAATCCGAGGAACAACTGATCAAGTTTCAAAGAACAAAAAGTAGTCGGGGAAAGTACAAGTGCGAAACTTGCAAGAAAGTCTTCAAATCCTATCAAGCTCTTGGCGGGCACAGAGCGAGTCACAAGAAGATTAAAGCCGCTGCTGCTGCTGCTAATCCAAACCTGAATCGCATTGTTTATAAGCCGGAACCCGACCCAGAAATTAACCACAATGCAGGCAGTTCTTCTTTCGCAAAAACCCATCAATGCCCTGTTTGTTTCAGAGTCTTCTCATCTGGGCAAGCGCTTGGTGGACACAAGAGATCACATGTGACAGGTTCTGCAGCCATTAATAACACTCATCATCATACTCCTCCTGTAAAAAGCTTGGCAAAGCTAGGTGACAATATGATAGATCTTAATCTTCCTGCTCCTGTTGATGATGATGAGATGAGCCAAATCGAGCTTTCTGCGGTTTCTGATGCTGAATTTGTGAACCCAATTAGGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

420

Amino Acids

47.73

Weight (kDa)

5.45

Isoelectric Point (pI)

63.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	3 - 27	8.1e-06	C2H2-type zinc finger
zf-C2H2_6	PF13912	275 - 299	2.5e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	337 - 359	9.9e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45120 AT3G60580
fragaria_vesca	FvH4_7g10990
malus_domestica	MD01G1182000.v1.1 MD02G1214100.v1.1 MD07G1114000.v1.1 MD07G1252200.v1.1
prunus_persica	Prupe.2G136700_v2.0.a1 Prupe.2G275700_v2.0.a1
pyrus_communis	pycom01g19180 pycom07g09900 pycom07g22460 pycom12659g00040
rosa_chinensis	RchiOBHm_Chr1g0348921
rosa_laevigata	RLG00000028616
rosa_multiflora	Rmu_sc0000106.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306520
rosa_rugosa	Rorug01G0198500.1
rosa_samantha	Rh1AG216000 Rh1BG182100 Rh1CG200300 Rh1DG212000
rosa_wichuraiana	Rw1G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	948
AasI	GACNNNNNNGTC	1 cut(s)	385
AccII	CGCG	1 cut(s)	424
AciI	CCGC	5 cut(s)	418, 424, 873, 906, 1220
AclWI	GGATC	2 cut(s)	405, 744
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	1 cut(s)	1235
AcuI	CTGAAG	2 cut(s)	344, 753
AfaI	GTAC	1 cut(s)	824
AfeI	AGCGCT	1 cut(s)	1053
AfiI	CCNNNNNNNGG	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	1075
AgeI	ACCGGT	1 cut(s)	604
AgsI	TTSAA	5 cut(s)	547, 615, 740, 797, 853
AluBI	AGCT	9 cut(s)	22, 53, 179, 520, 559, 866, 1134, 1144, 1213
AluI	AGCT	9 cut(s)	22, 53, 179, 520, 559, 866, 1134, 1144, 1213
Alw26I	GTCTC	5 cut(s)	78, 371, 400, 659, 666
AlwI	GGATC	2 cut(s)	405, 744
AlwNI	CAGNNNCTG	1 cut(s)	1088
Aor51HI	AGCGCT	1 cut(s)	1053
AoxI	GGCC	1 cut(s)	432
ApeKI	GCWGC	5 cut(s)	908, 911, 914, 917, 1091
ApoI	RAATTY	1 cut(s)	1235
AseI	ATTAAT	1 cut(s)	1098
AsiGI	ACCGGT	1 cut(s)	604
Asp700I	GAANNNNTTC	1 cut(s)	848
AspLEI	GCGC	2 cut(s)	136, 1054
AsuHPI	GGTGA	3 cut(s)	524, 619, 1160
BaeGI	GKGCMC	1 cut(s)	879
BbsI	GAAGAC	2 cut(s)	841, 1027
BbvI	GCAGC	5 cut(s)	895, 898, 901, 904, 1103
BccI	CCATC	1 cut(s)	1017
BcgI	CGANNNNNNTGC	2 cut(s)	1199, 1233
BclI	TGATCA	4 cut(s)	142, 442, 715, 786
BcoDI	GTCTC	5 cut(s)	78, 371, 400, 659, 666
BfaI	CTAG	2 cut(s)	536, 1145
BfmI	CTRYAG	1 cut(s)	1089
BfoI	RGCGCY	2 cut(s)	137, 1055
BglII	AGATCT	1 cut(s)	1162
BisI	GCNGC	6 cut(s)	906, 909, 912, 915, 918, 1092
BlsI	GCNGC	6 cut(s)	907, 910, 913, 916, 919, 1093
BmiI	GGNNCC	1 cut(s)	957
BmsI	GCATC	5 cut(s)	331, 517, 613, 718, 1219
BpiI	GAAGAC	2 cut(s)	841, 1027
BsaBI	GATNNNNATC	2 cut(s)	447, 1167
BsaI	GGTCTC	2 cut(s)	78, 371
BsaJI	CCNNGG	2 cut(s)	753, 774
BsaWI	WCCGGW	1 cut(s)	604
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse118I	RCCGGY	1 cut(s)	604
Bse8I	GATNNNNATC	2 cut(s)	447, 1167
BseDI	CCNNGG	2 cut(s)	753, 774
BseGI	GGATG	4 cut(s)	232, 346, 511, 733
BseJI	GATNNNNATC	2 cut(s)	447, 1167
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseRI	GAGGAG	5 cut(s)	134, 137, 245, 313, 1110
BseSI	GKGCMC	1 cut(s)	879
BseXI	GCAGC	5 cut(s)	895, 898, 901, 904, 1103
Bsh1236I	CGCG	1 cut(s)	424
BshFI	GGCC	1 cut(s)	434
BshTI	ACCGGT	1 cut(s)	604
BsiSI	CCGG	2 cut(s)	605, 953
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	5 cut(s)	78, 371, 400, 659, 666
BsmBI	CGTCTC	1 cut(s)	400
BsmI	GAATGC	1 cut(s)	303
BsnI	GGCC	1 cut(s)	434
Bso31I	GGTCTC	2 cut(s)	78, 371
Bsp1286I	GDGCHC	1 cut(s)	879
BspACI	CCGC	5 cut(s)	418, 424, 873, 906, 1220
BspANI	GGCC	1 cut(s)	434
BspFNI	CGCG	1 cut(s)	424
BspHI	TCATGA	3 cut(s)	319, 457, 657
BspLI	GGNNCC	1 cut(s)	957
BspMAI	CTGCAG	1 cut(s)	1093
BspPI	GGATC	2 cut(s)	405, 744
BspTNI	GGTCTC	2 cut(s)	78, 371
BsrFI	RCCGGY	1 cut(s)	604
BssAI	RCCGGY	1 cut(s)	604
BssECI	CCNNGG	2 cut(s)	753, 774
BssT1I	CCWWGG	1 cut(s)	753
Bst4CI	ACNGT	1 cut(s)	764
BstC8I	GCNNGC	4 cut(s)	346, 875, 985, 1050
BstDEI	CTNAG	1 cut(s)	281
BstF5I	GGATG	4 cut(s)	232, 346, 511, 733
BstFNI	CGCG	1 cut(s)	424
BstH2I	RGCGCY	2 cut(s)	137, 1055
BstHHI	GCGC	2 cut(s)	136, 1054
BstMAI	GTCTC	5 cut(s)	78, 371, 400, 659, 666
BstMWI	GCNNNNNNNGC	6 cut(s)	33, 341, 837, 911, 914, 917
BstNSI	RCATGY	1 cut(s)	1079
BstSFI	CTRYAG	1 cut(s)	1089
BstSLI	GKGCMC	1 cut(s)	879
BstUI	CGCG	1 cut(s)	424
BstV1I	GCAGC	5 cut(s)	895, 898, 901, 904, 1103
BstV2I	GAAGAC	2 cut(s)	841, 1027
BstX2I	RGATCY	2 cut(s)	749, 1162
BstYI	RGATCY	2 cut(s)	749, 1162
BsuRI	GGCC	1 cut(s)	434
BtsCI	GGATG	4 cut(s)	232, 346, 511, 733
BtsIMutI	CAGTG	1 cut(s)	769
Cac8I	GCNNGC	4 cut(s)	346, 875, 985, 1050
CaiI	CAGNNNCTG	1 cut(s)	1088
CciI	TCATGA	3 cut(s)	319, 457, 657
CfoI	GCGC	2 cut(s)	136, 1054
Cfr10I	RCCGGY	1 cut(s)	604
CseI	GACGC	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	823
CspAI	ACCGGT	1 cut(s)	604
CviAII	CATG	8 cut(s)	28, 79, 140, 320, 436, 458, 658, 1076
CviQI	GTAC	1 cut(s)	823
DdeI	CTNAG	1 cut(s)	281
DrdI	GACNNNNNNGTC	1 cut(s)	385
DseDI	GACNNNNNNGTC	1 cut(s)	385
EaeI	YGGCCR	1 cut(s)	432
Eco130I	CCWWGG	1 cut(s)	753
Eco31I	GGTCTC	2 cut(s)	78, 371
Eco47III	AGCGCT	1 cut(s)	1053
Eco57I	CTGAAG	2 cut(s)	344, 753
EcoT14I	CCWWGG	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	753
Esp3I	CGTCTC	1 cut(s)	400
FaeI	CATG	8 cut(s)	31, 82, 143, 323, 439, 461, 661, 1079
FalI	AAGNNNNNCTT	2 cut(s)	833, 865
FatI	CATG	8 cut(s)	27, 78, 139, 319, 435, 457, 657, 1075
FauI	CCCGC	1 cut(s)	866
FauNDI	CATATG	1 cut(s)	66
FbaI	TGATCA	4 cut(s)	142, 442, 715, 786
Fnu4HI	GCNGC	6 cut(s)	906, 909, 912, 915, 918, 1092
FokI	GGATG	4 cut(s)	239, 353, 498, 740
Fsp4HI	GCNGC	6 cut(s)	906, 909, 912, 915, 918, 1092
FspBI	CTAG	2 cut(s)	536, 1145
GlaI	GCGC	2 cut(s)	135, 1053
GluI	GCNGC	6 cut(s)	906, 909, 912, 915, 918, 1092
HaeII	RGCGCY	2 cut(s)	137, 1055
HaeIII	GGCC	1 cut(s)	434
HapII	CCGG	2 cut(s)	605, 953
HgaI	GACGC	1 cut(s)	430
HhaI	GCGC	2 cut(s)	136, 1054
Hin1II	CATG	8 cut(s)	31, 82, 143, 323, 439, 461, 661, 1079
Hin6I	GCGC	2 cut(s)	134, 1052
HinP1I	GCGC	2 cut(s)	134, 1052
HindIII	AAGCTT	3 cut(s)	20, 518, 1132
HinfI	GANTC	9 cut(s)	94, 103, 167, 383, 575, 770, 886, 934, 1032
HpaII	CCGG	2 cut(s)	605, 953
HphI	GGTGA	3 cut(s)	524, 619, 1160
Hpy166II	GTNNAC	2 cut(s)	1061, 1243
Hpy188I	TCNGA	8 cut(s)	93, 102, 190, 405, 622, 775, 1031, 1228
Hpy188III	TCNNGA	8 cut(s)	107, 320, 362, 458, 547, 658, 669, 719
Hpy8I	GTNNAC	2 cut(s)	1061, 1243
HpyAV	CCTTC	5 cut(s)	98, 104, 215, 257, 553
HpyCH4III	ACNGT	1 cut(s)	764
HpyCH4V	TGCA	4 cut(s)	27, 840, 983, 1091
HpyF10VI	GCNNNNNNNGC	6 cut(s)	33, 341, 837, 911, 914, 917
HpyF3I	CTNAG	1 cut(s)	281
Hsp92II	CATG	8 cut(s)	31, 82, 143, 323, 439, 461, 661, 1079
HspAI	GCGC	2 cut(s)	134, 1052
Ksp22I	TGATCA	4 cut(s)	142, 442, 715, 786
LmnI	GCTCC	2 cut(s)	300, 1183
Lsp1109I	GCAGC	5 cut(s)	895, 898, 901, 904, 1103
LweI	GCATC	5 cut(s)	331, 517, 613, 718, 1219
MaeI	CTAG	2 cut(s)	536, 1145
MaeIII	GTNAC	3 cut(s)	887, 1078, 1148
MflI	RGATCY	2 cut(s)	749, 1162
MhlI	GDGCHC	1 cut(s)	879
MluCI	AATT	6 cut(s)	552, 615, 740, 969, 1235, 1248
MlyI	GAGTC	4 cut(s)	161, 392, 895, 1041
MroXI	GAANNNNTTC	1 cut(s)	848
MseI	TTAA	6 cut(s)	522, 555, 900, 972, 1098, 1167
MslI	CAYNNNNRTG	1 cut(s)	456
MspA1I	CMGCKG	1 cut(s)	908
MspI	CCGG	2 cut(s)	605, 953
Mva1269I	GAATGC	1 cut(s)	303
MvnI	CGCG	1 cut(s)	424
MwoI	GCNNNNNNNGC	6 cut(s)	33, 341, 837, 911, 914, 917
NdeI	CATATG	1 cut(s)	66
NlaIII	CATG	8 cut(s)	31, 82, 143, 323, 439, 461, 661, 1079
NlaIV	GGNNCC	1 cut(s)	957
NmuCI	GTSAC	3 cut(s)	887, 1078, 1148
NspI	RCATGY	1 cut(s)	1079
PagI	TCATGA	3 cut(s)	319, 457, 657
PciI	ACATGT	1 cut(s)	1075
PctI	GAATGC	1 cut(s)	303
PdmI	GAANNNNTTC	1 cut(s)	848
PfeI	GAWTC	5 cut(s)	94, 103, 575, 770, 934
PflFI	GACNNNGTC	1 cut(s)	382
PinAI	ACCGGT	1 cut(s)	604
PkrI	GCNGC	6 cut(s)	907, 910, 913, 916, 919, 1093
PleI	GAGTC	4 cut(s)	161, 391, 894, 1040
PpsI	GAGTC	4 cut(s)	161, 391, 894, 1040
PscI	ACATGT	1 cut(s)	1075
PshBI	ATTAAT	1 cut(s)	1098
PsiI	TTATAA	1 cut(s)	948
PspN4I	GGNNCC	1 cut(s)	957
PstI	CTGCAG	1 cut(s)	1093
PstNI	CAGNNNCTG	1 cut(s)	1088
PsuI	RGATCY	2 cut(s)	749, 1162
PsyI	GACNNNGTC	1 cut(s)	382
RsaI	GTAC	1 cut(s)	824
RsaNI	GTAC	1 cut(s)	823
RseI	CAYNNNNRTG	1 cut(s)	456
SaqAI	TTAA	6 cut(s)	522, 555, 900, 972, 1098, 1167
SatI	GCNGC	6 cut(s)	906, 909, 912, 915, 918, 1092
SchI	GAGTC	4 cut(s)	161, 392, 895, 1041
SduI	GDGCHC	1 cut(s)	879
SfaNI	GCATC	5 cut(s)	331, 517, 613, 718, 1219
SfcI	CTRYAG	1 cut(s)	1089
SmiMI	CAYNNNNRTG	1 cut(s)	456
Sse9I	AATT	6 cut(s)	552, 615, 740, 969, 1235, 1248
SsiI	CCGC	5 cut(s)	418, 424, 873, 906, 1220
SspMI	CTAG	2 cut(s)	536, 1145
StyI	CCWWGG	1 cut(s)	753
TaaI	ACNGT	1 cut(s)	764
TaqI	TCGA	3 cut(s)	307, 668, 1209
TaqII	GACCGA	1 cut(s)	395
TasI	AATT	6 cut(s)	552, 615, 740, 969, 1235, 1248
TatI	WGTACW	1 cut(s)	822
TauI	GCSGC	1 cut(s)	908
TfiI	GAWTC	5 cut(s)	94, 103, 575, 770, 934
Tru1I	TTAA	6 cut(s)	522, 555, 900, 972, 1098, 1167
Tru9I	TTAA	6 cut(s)	522, 555, 900, 972, 1098, 1167
TscAI	CASTG	1 cut(s)	769
TseFI	GTSAC	3 cut(s)	887, 1078, 1148
TseI	GCWGC	5 cut(s)	908, 911, 914, 917, 1091
Tsp45I	GTSAC	3 cut(s)	887, 1078, 1148
TspDTI	ATGAA	7 cut(s)	86, 98, 174, 216, 273, 479, 783
TspRI	CASTG	1 cut(s)	769
Tth111I	GACNNNGTC	1 cut(s)	382
VspI	ATTAAT	1 cut(s)	1098
XapI	RAATTY	1 cut(s)	1235
XceI	RCATGY	1 cut(s)	1079
XmnI	GAANNNNTTC	1 cut(s)	848
XspI	CTAG	2 cut(s)	536, 1145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.