Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008314

Physical Location & Seq

Genomic Coordinates Forward (+)

19432683 .. 19435199

Gene Structure 2517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G136700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGAGAGGCATAAGTGTAAGCTTTGCATGAGGAGCTTCTCCAATGGCAGAGCCTTGGGGGGTCACATGAGGTCTCATATGATGAACCTTCCAATTCCTGCAAAACCAGAACTTGAGGAGGAGGAAGAAGTACCACCAGGTAGGAACCAGGACCAAGTCCAGCTTCTCATTGATGAACTTGCCGAGTCTGCTTCAGCTTCTTCATCTTCTTCTGAAGAAGAAGATGAACATGGGGACGAAGGGGAAGAAGGGGAAGAGGGTATGTTTTATGGGCTCAGAGAGAATCCAAAGAGAAGCATAAGGCTAGTAGATCCTGAGTTTTCTTTTGCTGTGGATGCTGGCTCTGTTGTTCTTCAAGATAGAGAGAGTGAGACTGAGTCGTCTAAGAACCCAACTCGGAGACGATCCAAAAGGACTCGGAAATCCGCCATGTTAGAGCTTCATCATCAATACCAAAACCACCATCAAAAGCTTGAAGCTTTGAAGAAAATTAAGCTAAAAAACAAAGTCATTAGCAGCAGCAAGACCGATTCTTTCGAGCCCGAACCGGTTAGTTCAATTTCTGATGCCACCACAGAAGAAGATGTTGCCTTTTGCCTCATGATGCTCTCAAGGGACAAATGGAAAAAACAAGACCAACAACATCATCAACAACAACATCAACACGAACAAGAACAAGATCAGGACGACGAAGCTGAAAGATCAATGGAGGACAGTGATGAATCCGAGGAACAGCTGGTGAAGTTTCCAAGAACTAGAACTACGCGAGGGAAGTACAAATGCGAAACATGCAACAAAGTGTTTAAATCCTATCAAGCTTTAGGTGGGCACAGGGCCAGCCACAAGAAAATCAAAGCTTCCAATCCTAACCCCATCTATGAACATGAATTGGAGCAAGAAAATAATGCAGGTGCTTCTTCTGTAGCAGAAAGGAAAACCCATGAATGCCCAGTTTGTTTTAGAGTCTTTTCATCTGGTCAAGCTCTTGGTGGGCACAAAAGATCCCATGTGACTGGTTCAGCAGCAGCTGCTGCTACCCATGTGAAAAATTTAAACAAGCTTGGTGACAATTTGATAGATCTTAATCTTCCTGCTCCTGTTGAAGATGATGAGATCAGCCAAATTGAGCTATCTGCAGTTTCTGATGCTGAGTTTGTGAACCCCATTAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

392

Amino Acids

44.22

Weight (kDa)

5.67

Isoelectric Point (pI)

63.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45120 AT3G60580
fragaria_vesca	FvH4_7g10990
malus_domestica	MD01G1182000.v1.1 MD02G1214100.v1.1 MD07G1114000.v1.1 MD07G1252200.v1.1
prunus_persica	Prupe.2G136700_v2.0.a1 Prupe.2G275700_v2.0.a1
pyrus_communis	pycom01g19180 pycom07g09900 pycom07g22460 pycom12659g00040
rosa_chinensis	RchiOBHm_Chr1g0348921
rosa_laevigata	RLG00000028616
rosa_multiflora	Rmu_sc0000106.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306520
rosa_rugosa	Rorug01G0198500.1
rosa_samantha	Rh1AG216000 Rh1BG182100 Rh1CG200300 Rh1DG212000
rosa_wichuraiana	Rw1G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	899
AasI	GACNNNNNNGTC	1 cut(s)	379
Acc36I	ACCTGC	1 cut(s)	899
AccII	CGCG	1 cut(s)	766
AciI	CCGC	1 cut(s)	426
AclWI	GGATC	3 cut(s)	305, 399, 996
AcsI	RAATTY	1 cut(s)	1048
AcuI	CTGAAG	2 cut(s)	177, 234
AfaI	GTAC	2 cut(s)	132, 776
AgeI	ACCGGT	1 cut(s)	547
AgsI	TTSAA	5 cut(s)	356, 476, 484, 558, 1103
AjnI	CCWGG	2 cut(s)	136, 147
AjuI	GAANNNNNNNTTGG	2 cut(s)	147, 179
Alw26I	GTCTC	3 cut(s)	78, 365, 394
AlwI	GGATC	3 cut(s)	305, 399, 996
AlwNI	CAGNNNCTG	3 cut(s)	1028, 1031, 1142
AoxI	GGCC	1 cut(s)	834
ApeKI	GCWGC	6 cut(s)	516, 519, 1022, 1025, 1028, 1031
ApoI	RAATTY	1 cut(s)	1048
AsiGI	ACCGGT	1 cut(s)	547
AspS9I	GGNCC	2 cut(s)	151, 834
AsuHPI	GGTGA	2 cut(s)	751, 1076
AvaII	GGWCC	1 cut(s)	151
BaeGI	GKGCMC	2 cut(s)	831, 996
BanII	GRGCYC	2 cut(s)	276, 543
BbvI	GCAGC	6 cut(s)	528, 531, 1015, 1018, 1034, 1037
BccI	CCATC	2 cut(s)	471, 881
BciT130I	CCWGG	2 cut(s)	138, 149
BcoDI	GTCTC	3 cut(s)	78, 365, 394
BfaI	CTAG	2 cut(s)	305, 756
BfmI	CTRYAG	2 cut(s)	921, 1134
BfuAI	ACCTGC	1 cut(s)	899
BglII	AGATCT	1 cut(s)	1078
BisI	GCNGC	6 cut(s)	517, 520, 1023, 1026, 1029, 1032
BlsI	GCNGC	6 cut(s)	518, 521, 1024, 1027, 1030, 1033
Bme1390I	CCNGG	2 cut(s)	138, 149
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	151, 834
BmiI	GGNNCC	1 cut(s)	146
BmrFI	CCNGG	2 cut(s)	138, 149
BmrI	ACTGGG	1 cut(s)	944
BmsI	GCATC	4 cut(s)	325, 556, 594, 1135
BmuI	ACTGGG	1 cut(s)	944
BpuEI	CTTGAG	2 cut(s)	134, 595
BsaBI	GATNNNNATC	1 cut(s)	1083
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	54, 726
BsaWI	WCCGGW	1 cut(s)	547
Bse118I	RCCGGY	1 cut(s)	547
Bse1I	ACTGG	2 cut(s)	950, 1018
Bse8I	GATNNNNATC	1 cut(s)	1083
BseBI	CCWGG	2 cut(s)	138, 149
BseDI	CCNNGG	2 cut(s)	54, 726
BseGI	GGATG	1 cut(s)	340
BseJI	GATNNNNATC	1 cut(s)	1083
BseMII	CTCAG	4 cut(s)	289, 306, 366, 1140
BseNI	ACTGG	2 cut(s)	950, 1018
BseRI	GAGGAG	3 cut(s)	46, 131, 134
BseSI	GKGCMC	2 cut(s)	831, 996
BseXI	GCAGC	6 cut(s)	528, 531, 1015, 1018, 1034, 1037
Bsh1236I	CGCG	1 cut(s)	766
BshFI	GGCC	1 cut(s)	836
BshTI	ACCGGT	1 cut(s)	547
BsiSI	CCGG	1 cut(s)	548
BslFI	GGGAC	2 cut(s)	248, 629
BsmAI	GTCTC	3 cut(s)	78, 365, 394
BsmBI	CGTCTC	1 cut(s)	394
BsmFI	GGGAC	2 cut(s)	248, 629
BsmI	GAATGC	1 cut(s)	950
BsnI	GGCC	1 cut(s)	836
Bso31I	GGTCTC	1 cut(s)	78
Bsp1286I	GDGCHC	4 cut(s)	276, 543, 831, 996
Bsp143I	GATC	7 cut(s)	310, 404, 679, 701, 1001, 1078, 1113
BspACI	CCGC	1 cut(s)	426
BspANI	GGCC	1 cut(s)	836
BspCNI	CTCAG	4 cut(s)	288, 307, 367, 1141
BspFNI	CGCG	1 cut(s)	766
BspHI	TCATGA	1 cut(s)	600
BspLI	GGNNCC	1 cut(s)	146
BspMAI	CTGCAG	1 cut(s)	1138
BspMI	ACCTGC	1 cut(s)	899
BspPI	GGATC	3 cut(s)	305, 399, 996
BspTNI	GGTCTC	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	547
BsrI	ACTGG	2 cut(s)	950, 1018
BssAI	RCCGGY	1 cut(s)	547
BssECI	CCNNGG	2 cut(s)	54, 726
BssMI	GATC	7 cut(s)	310, 404, 679, 701, 1001, 1078, 1113
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	2 cut(s)	138, 149
Bst4CI	ACNGT	1 cut(s)	716
Bst6I	CTCTTC	1 cut(s)	249
BstAPI	GCANNNNNTGC	2 cut(s)	1028, 1031
BstC8I	GCNNGC	2 cut(s)	340, 838
BstDEI	CTNAG	5 cut(s)	275, 315, 375, 384, 1149
BstF5I	GGATG	1 cut(s)	340
BstFNI	CGCG	1 cut(s)	766
BstKTI	GATC	7 cut(s)	313, 407, 682, 704, 1004, 1081, 1116
BstMAI	GTCTC	3 cut(s)	78, 365, 394
BstMBI	GATC	7 cut(s)	310, 404, 679, 701, 1001, 1078, 1113
BstMWI	GCNNNNNNNGC	6 cut(s)	33, 188, 335, 789, 1028, 1031
BstNI	CCWGG	2 cut(s)	138, 149
BstNSI	RCATGY	1 cut(s)	792
BstSCI	CCNGG	2 cut(s)	136, 147
BstSFI	CTRYAG	2 cut(s)	921, 1134
BstSLI	GKGCMC	2 cut(s)	831, 996
BstUI	CGCG	1 cut(s)	766
BstV1I	GCAGC	6 cut(s)	528, 531, 1015, 1018, 1034, 1037
BstX2I	RGATCY	3 cut(s)	310, 1001, 1078
BstXI	CCANNNNNNTGG	1 cut(s)	1013
BstYI	RGATCY	3 cut(s)	310, 1001, 1078
BsuRI	GGCC	1 cut(s)	836
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	721
BveI	ACCTGC	1 cut(s)	899
Cac8I	GCNNGC	2 cut(s)	340, 838
CaiI	CAGNNNCTG	3 cut(s)	1028, 1031, 1142
CciI	TCATGA	1 cut(s)	600
Cfr10I	RCCGGY	1 cut(s)	547
Cfr13I	GGNCC	2 cut(s)	151, 834
CsiI	ACCWGGT	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	131, 775
CspAI	ACCGGT	1 cut(s)	547
CviQI	GTAC	2 cut(s)	131, 775
DdeI	CTNAG	5 cut(s)	275, 315, 375, 384, 1149
DpnI	GATC	7 cut(s)	312, 406, 681, 703, 1003, 1080, 1115
DpnII	GATC	7 cut(s)	310, 404, 679, 701, 1001, 1078, 1113
DraI	TTTAAA	2 cut(s)	805, 1053
DrdI	GACNNNNNNGTC	1 cut(s)	379
DseDI	GACNNNNNNGTC	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
EciI	GGCGGA	1 cut(s)	415
Eco130I	CCWWGG	1 cut(s)	54
Eco24I	GRGCYC	2 cut(s)	276, 543
Eco31I	GGTCTC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	151
Eco57I	CTGAAG	2 cut(s)	177, 234
EcoRII	CCWGG	2 cut(s)	136, 147
EcoT14I	CCWWGG	1 cut(s)	54
EcoT38I	GRGCYC	2 cut(s)	276, 543
ErhI	CCWWGG	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	394
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FaqI	GGGAC	2 cut(s)	248, 629
FauNDI	CATATG	1 cut(s)	78
Fnu4HI	GCNGC	6 cut(s)	517, 520, 1023, 1026, 1029, 1032
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	2 cut(s)	276, 543
Fsp4HI	GCNGC	6 cut(s)	517, 520, 1023, 1026, 1029, 1032
FspBI	CTAG	2 cut(s)	305, 756
GluI	GCNGC	6 cut(s)	517, 520, 1023, 1026, 1029, 1032
HaeIII	GGCC	1 cut(s)	836
HapII	CCGG	1 cut(s)	548
HindIII	AAGCTT	6 cut(s)	20, 470, 477, 816, 855, 1058
HinfI	GANTC	7 cut(s)	185, 283, 377, 415, 530, 722, 963
HpaII	CCGG	1 cut(s)	548
HphI	GGTGA	2 cut(s)	751, 1076
Hpy166II	GTNNAC	1 cut(s)	1159
Hpy188I	TCNGA	7 cut(s)	214, 278, 399, 420, 565, 727, 1144
Hpy188III	TCNNGA	4 cut(s)	314, 356, 601, 683
Hpy8I	GTNNAC	1 cut(s)	1159
Hpy99I	CGWCG	1 cut(s)	692
HpyAV	CCTTC	3 cut(s)	98, 233, 242
HpyCH4III	ACNGT	1 cut(s)	716
HpyCH4V	TGCA	5 cut(s)	27, 101, 792, 908, 1136
HpyF10VI	GCNNNNNNNGC	6 cut(s)	33, 188, 335, 789, 1028, 1031
HpyF3I	CTNAG	5 cut(s)	275, 315, 375, 384, 1149
Kzo9I	GATC	7 cut(s)	310, 404, 679, 701, 1001, 1078, 1113
LmnI	GCTCC	3 cut(s)	33, 892, 1099
Lsp1109I	GCAGC	6 cut(s)	528, 531, 1015, 1018, 1034, 1037
LweI	GCATC	4 cut(s)	325, 556, 594, 1135
MabI	ACCWGGT	1 cut(s)	136
MaeI	CTAG	2 cut(s)	305, 756
MaeIII	GTNAC	3 cut(s)	62, 1009, 1064
MalI	GATC	7 cut(s)	312, 406, 681, 703, 1003, 1080, 1115
MboI	GATC	7 cut(s)	310, 404, 679, 701, 1001, 1078, 1113
MflI	RGATCY	3 cut(s)	310, 1001, 1078
MhlI	GDGCHC	4 cut(s)	276, 543, 831, 996
MluCI	AATT	7 cut(s)	93, 489, 558, 887, 1048, 1069, 1122
MlyI	GAGTC	4 cut(s)	194, 386, 409, 972
MseI	TTAA	4 cut(s)	492, 804, 1052, 1083
MspA1I	CMGCKG	2 cut(s)	736, 1028
MspI	CCGG	1 cut(s)	548
MspR9I	CCNGG	2 cut(s)	138, 149
Mva1269I	GAATGC	1 cut(s)	950
MvaI	CCWGG	2 cut(s)	138, 149
MvnI	CGCG	1 cut(s)	766
MwoI	GCNNNNNNNGC	6 cut(s)	33, 188, 335, 789, 1028, 1031
NdeI	CATATG	1 cut(s)	78
NdeII	GATC	7 cut(s)	310, 404, 679, 701, 1001, 1078, 1113
NlaIV	GGNNCC	1 cut(s)	146
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	3 cut(s)	62, 1009, 1064
NspI	RCATGY	1 cut(s)	792
PagI	TCATGA	1 cut(s)	600
PaqCI	CACCTGC	1 cut(s)	899
PctI	GAATGC	1 cut(s)	950
PfeI	GAWTC	3 cut(s)	283, 530, 722
PflFI	GACNNNGTC	2 cut(s)	155, 376
PinAI	ACCGGT	1 cut(s)	547
PkrI	GCNGC	6 cut(s)	518, 521, 1024, 1027, 1030, 1033
PleI	GAGTC	4 cut(s)	193, 385, 409, 971
PpsI	GAGTC	4 cut(s)	193, 385, 409, 971
Psp6I	CCWGG	2 cut(s)	136, 147
PspGI	CCWGG	2 cut(s)	136, 147
PspN4I	GGNNCC	1 cut(s)	146
PspPI	GGNCC	2 cut(s)	151, 834
PsrI	GAACNNNNNNTAC	2 cut(s)	745, 777
PstI	CTGCAG	1 cut(s)	1138
PstNI	CAGNNNCTG	3 cut(s)	1028, 1031, 1142
PsuI	RGATCY	3 cut(s)	310, 1001, 1078
PsyI	GACNNNGTC	2 cut(s)	155, 376
PvuII	CAGCTG	2 cut(s)	736, 1028
RsaI	GTAC	2 cut(s)	132, 776
RsaNI	GTAC	2 cut(s)	131, 775
SaqAI	TTAA	4 cut(s)	492, 804, 1052, 1083
SatI	GCNGC	6 cut(s)	517, 520, 1023, 1026, 1029, 1032
Sau3AI	GATC	7 cut(s)	310, 404, 679, 701, 1001, 1078, 1113
Sau96I	GGNCC	2 cut(s)	151, 834
SchI	GAGTC	4 cut(s)	194, 386, 409, 972
ScrFI	CCNGG	2 cut(s)	138, 149
SduI	GDGCHC	4 cut(s)	276, 543, 831, 996
SexAI	ACCWGGT	1 cut(s)	136
SfaNI	GCATC	4 cut(s)	325, 556, 594, 1135
SfcI	CTRYAG	2 cut(s)	921, 1134
SinI	GGWCC	1 cut(s)	151
SmlI	CTYRAG	2 cut(s)	113, 610
SmoI	CTYRAG	2 cut(s)	113, 610
Sse9I	AATT	7 cut(s)	93, 489, 558, 887, 1048, 1069, 1122
SsiI	CCGC	1 cut(s)	426
SspMI	CTAG	2 cut(s)	305, 756
StyD4I	CCNGG	2 cut(s)	136, 147
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	716
TaqI	TCGA	1 cut(s)	537
TaqII	GACCGA	1 cut(s)	542
TasI	AATT	7 cut(s)	93, 489, 558, 887, 1048, 1069, 1122
TatI	WGTACW	1 cut(s)	774
TfiI	GAWTC	3 cut(s)	283, 530, 722
Tru1I	TTAA	4 cut(s)	492, 804, 1052, 1083
Tru9I	TTAA	4 cut(s)	492, 804, 1052, 1083
TscAI	CASTG	1 cut(s)	721
TseFI	GTSAC	3 cut(s)	62, 1009, 1064
TseI	GCWGC	6 cut(s)	516, 519, 1022, 1025, 1028, 1031
Tsp45I	GTSAC	3 cut(s)	62, 1009, 1064
TspRI	CASTG	1 cut(s)	721
Tth111I	GACNNNGTC	2 cut(s)	155, 376
VpaK11BI	GGWCC	1 cut(s)	151
XapI	RAATTY	1 cut(s)	1048
XceI	RCATGY	1 cut(s)	792
XspI	CTAG	2 cut(s)	305, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.