Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0008314

Physical Location & Seq

Genomic Coordinates Reverse (-)

28085892 .. 28086848

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1182000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGAGAAGCACAGAATCTGCAAGATCTGCAACAAACGGTTCTCTAATGGAAAAGCGATGGGGGGTCACATGAGGTCCCACCTCGCCAAGCTTCCTCTCCCTCCGAAGCCGCAGTCGCCGCCGCAGCAGCAGCAGCATCACCAACTCAGTAACTCGCCGGAGTCGTCGTCTCTTCCATTTTCGACCTCGAACAGGGGCATGCATTCTTCTCTGGATTCAGCCTTGGTCCACGACGACAGCGACAGCGAGTCCCACCCGAGAAACCCAACGCGGAGAAGATCCAAGCGGCGCCGCAAAGTGATTGGCAAATCTTCGCCGCTGCCGTTCGAGGCAGAACAGGTGAGTTCTGTTTCCGATACTTTTTCAACTGAAGATGTTGCCAGGTGTCTCATCATGCTATCGATGGATAAATGGGAAACAGTGAAAGTAAAAAATGGGGTGGTTGAGTCCGTGGAGAAGGAGGAGGAAGATGAGTCCGACAGCGGCGGCCGTTCAGATTTTCGGATCAAGGATCGGGTCCGGAGTCAGGGAAAGTACAAGTGTGAGACTTGTGACAAAGTGTTCCGATCTTATCAAGCGCTCGGAGGGCACAGAGCGAGTCACAAGAAAACCATCAAAACCCAAGTGTTTGATGACTACGAAGAGGAAGAAGATGAAGATTTTGAGGAAGGTGATGGGCAGGATGGTAACTTGGCGGTGGTGGAGAATCACAGGACATTTGAGTGCTCTGTTTGTTTCAGACGGTTTGATTCCGGCCAAGCACTCGGTGGGCATAAAAAAGTACACTACTACAATAATTTGACCAACAATGCCCCTGCTAGGAATGTTAATTTCTCATCATCTTCTACTAATTTTGTGGACAATTTGGTCATTGACCTCAATCTCCCTGCACCAGAGGAGGAGGAAGAAGAAGATGAAGAGGTTAGCCAGGTTGAATTATCAACAGTTTCCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

319

Amino Acids

35.95

Weight (kDa)

5.68

Isoelectric Point (pI)

76.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	5 - 29	8.9e-09	C2H2-type zinc finger
zf-C2H2_6	PF13912	179 - 203	4.5e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	240 - 262	5.7e-08	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45120 AT3G60580
fragaria_vesca	FvH4_7g10990
malus_domestica	MD01G1182000.v1.1 MD02G1214100.v1.1 MD07G1114000.v1.1 MD07G1252200.v1.1
prunus_persica	Prupe.2G136700_v2.0.a1 Prupe.2G275700_v2.0.a1
pyrus_communis	pycom01g19180 pycom07g09900 pycom07g22460 pycom12659g00040
rosa_chinensis	RchiOBHm_Chr1g0348921
rosa_laevigata	RLG00000028616
rosa_multiflora	Rmu_sc0000106.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306520
rosa_rugosa	Rorug01G0198500.1
rosa_samantha	Rh1AG216000 Rh1BG182100 Rh1CG200300 Rh1DG212000
rosa_wichuraiana	Rw1G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	866
AccB1I	GGYRCC	1 cut(s)	288
AccII	CGCG	1 cut(s)	271
AccIII	TCCGGA	1 cut(s)	519
AclWI	GGATC	3 cut(s)	273, 512, 519
AcoI	YGGCCR	2 cut(s)	487, 754
AcuI	CTGAAG	1 cut(s)	390
AcyI	GRCGYC	1 cut(s)	289
AdeI	CACNNNGTG	1 cut(s)	767
AfaI	GTAC	2 cut(s)	536, 783
AfeI	AGCGCT	1 cut(s)	579
AfiI	CCNNNNNNNGG	3 cut(s)	192, 526, 819
AgsI	TTSAA	2 cut(s)	366, 935
AhdI	GACNNNNNGTC	1 cut(s)	247
AjnI	CCWGG	2 cut(s)	380, 927
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw21I	GWGCWC	1 cut(s)	728
Alw26I	GTCTC	3 cut(s)	174, 392, 539
AlwI	GGATC	3 cut(s)	273, 512, 519
AlwNI	CAGNNNCTG	1 cut(s)	18
Ama87I	CYCGRG	1 cut(s)	256
Aor13HI	TCCGGA	1 cut(s)	519
Aor51HI	AGCGCT	1 cut(s)	579
AoxI	GGCC	2 cut(s)	487, 754
ApeKI	GCWGC	5 cut(s)	124, 127, 130, 133, 319
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspLEI	GCGC	2 cut(s)	291, 580
AspS9I	GGNCC	3 cut(s)	75, 226, 517
AsuHPI	GGTGA	3 cut(s)	131, 352, 683
AvaI	CYCGRG	1 cut(s)	256
AvaII	GGWCC	3 cut(s)	75, 226, 517
BaeGI	GKGCMC	1 cut(s)	591
BanI	GGYRCC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	728
BbvI	GCAGC	5 cut(s)	136, 139, 142, 145, 306
BccI	CCATC	5 cut(s)	52, 397, 620, 668, 677
BceAI	ACGGC	2 cut(s)	307, 474
BciT130I	CCWGG	2 cut(s)	382, 929
BcoDI	GTCTC	3 cut(s)	174, 392, 539
BfaI	CTAG	1 cut(s)	819
BfoI	RGCGCY	2 cut(s)	292, 581
BglII	AGATCT	1 cut(s)	24
Bme1390I	CCNGG	2 cut(s)	382, 929
Bme18I	GGWCC	3 cut(s)	75, 226, 517
BmeRI	GACNNNNNGTC	1 cut(s)	247
BmeT110I	CYCGRG	1 cut(s)	256
BmgT120I	GGNCC	3 cut(s)	75, 226, 517
BmiI	GGNNCC	3 cut(s)	77, 290, 518
BmrFI	CCNGG	2 cut(s)	382, 929
BmsI	GCATC	1 cut(s)	145
Bsa29I	ATCGAT	1 cut(s)	401
BsaHI	GRCGYC	1 cut(s)	289
BsaJI	CCNNGG	2 cut(s)	222, 450
BsaWI	WCCGGW	1 cut(s)	519
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	3 cut(s)	192, 526, 819
BseAI	TCCGGA	1 cut(s)	519
BseBI	CCWGG	2 cut(s)	382, 929
BseCI	ATCGAT	1 cut(s)	401
BseDI	CCNNGG	2 cut(s)	222, 450
BseGI	GGATG	1 cut(s)	688
BseLI	CCNNNNNNNGG	3 cut(s)	192, 526, 819
BseMII	CTCAG	1 cut(s)	160
BseRI	GAGGAG	3 cut(s)	476, 911, 914
BseSI	GKGCMC	1 cut(s)	591
BseX3I	CGGCCG	1 cut(s)	487
BseXI	GCAGC	5 cut(s)	136, 139, 142, 145, 306
BsgI	GTGCAG	1 cut(s)	873
Bsh1236I	CGCG	1 cut(s)	271
Bsh1285I	CGRYCG	1 cut(s)	490
BshFI	GGCC	2 cut(s)	489, 756
BshNI	GGYRCC	1 cut(s)	288
BshVI	ATCGAT	1 cut(s)	401
BsiEI	CGRYCG	1 cut(s)	490
BsiHKAI	GWGCWC	1 cut(s)	728
BsiHKCI	CYCGRG	1 cut(s)	256
BsiSI	CCGG	3 cut(s)	158, 520, 753
BslFI	GGGAC	2 cut(s)	61, 235
BslI	CCNNNNNNNGG	3 cut(s)	192, 526, 819
BsmAI	GTCTC	3 cut(s)	174, 392, 539
BsmBI	CGTCTC	1 cut(s)	174
BsmFI	GGGAC	2 cut(s)	61, 235
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	2 cut(s)	489, 756
BsoBI	CYCGRG	1 cut(s)	256
Bsp1286I	GDGCHC	2 cut(s)	591, 728
Bsp13I	TCCGGA	1 cut(s)	519
Bsp143I	GATC	5 cut(s)	24, 278, 504, 511, 566
BspANI	GGCC	2 cut(s)	489, 756
BspCNI	CTCAG	1 cut(s)	159
BspDI	ATCGAT	1 cut(s)	401
BspEI	TCCGGA	1 cut(s)	519
BspFNI	CGCG	1 cut(s)	271
BspLI	GGNNCC	3 cut(s)	77, 290, 518
BspPI	GGATC	3 cut(s)	273, 512, 519
BspT107I	GGYRCC	1 cut(s)	288
BssECI	CCNNGG	2 cut(s)	222, 450
BssMI	GATC	5 cut(s)	24, 278, 504, 511, 566
BssNI	GRCGYC	1 cut(s)	289
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	382, 929
Bst4CI	ACNGT	4 cut(s)	39, 421, 744, 946
Bst6I	CTCTTC	3 cut(s)	177, 636, 912
BstACI	GRCGYC	1 cut(s)	289
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	146
BstDSI	CCRYGG	1 cut(s)	450
BstENI	CCTNNNNNAGG	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	688
BstFNI	CGCG	1 cut(s)	271
BstH2I	RGCGCY	2 cut(s)	292, 581
BstHHI	GCGC	2 cut(s)	291, 580
BstKTI	GATC	5 cut(s)	27, 281, 507, 514, 569
BstMAI	GTCTC	3 cut(s)	174, 392, 539
BstMBI	GATC	5 cut(s)	24, 278, 504, 511, 566
BstMCI	CGRYCG	1 cut(s)	490
BstMWI	GCNNNNNNNGC	8 cut(s)	27, 115, 118, 124, 127, 130, 133, 586
BstNI	CCWGG	2 cut(s)	382, 929
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	2 cut(s)	380, 927
BstSLI	GKGCMC	1 cut(s)	591
BstUI	CGCG	1 cut(s)	271
BstV1I	GCAGC	5 cut(s)	136, 139, 142, 145, 306
BstX2I	RGATCY	2 cut(s)	24, 278
BstYI	RGATCY	2 cut(s)	24, 278
BstZI	CGGCCG	1 cut(s)	487
Bsu15I	ATCGAT	1 cut(s)	401
BsuRI	GGCC	2 cut(s)	489, 756
BsuTUI	ATCGAT	1 cut(s)	401
BtgI	CCRYGG	1 cut(s)	450
BtgZI	GCGATG	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	688
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	1 cut(s)	200
CaiI	CAGNNNCTG	1 cut(s)	18
CfoI	GCGC	2 cut(s)	291, 580
Cfr13I	GGNCC	3 cut(s)	75, 226, 517
ClaI	ATCGAT	1 cut(s)	401
Csp6I	GTAC	2 cut(s)	535, 782
CviAII	CATG	3 cut(s)	70, 199, 394
CviJI	RGCY	6 cut(s)	91, 109, 221, 489, 756, 927
CviKI_1	RGCY	6 cut(s)	91, 109, 221, 489, 756, 927
CviQI	GTAC	2 cut(s)	535, 782
DdeI	CTNAG	1 cut(s)	146
DinI	GGCGCC	1 cut(s)	290
DpnI	GATC	5 cut(s)	26, 280, 506, 513, 568
DpnII	GATC	5 cut(s)	24, 278, 504, 511, 566
DraIII	CACNNNGTG	1 cut(s)	767
DrdI	GACNNNNNNGTC	1 cut(s)	866
DriI	GACNNNNNGTC	1 cut(s)	247
DseDI	GACNNNNNNGTC	1 cut(s)	866
EaeI	YGGCCR	2 cut(s)	487, 754
EagI	CGGCCG	1 cut(s)	487
Eam1104I	CTCTTC	3 cut(s)	177, 636, 912
Eam1105I	GACNNNNNGTC	1 cut(s)	247
EarI	CTCTTC	3 cut(s)	177, 636, 912
EclXI	CGGCCG	1 cut(s)	487
Eco130I	CCWWGG	1 cut(s)	222
Eco47I	GGWCC	3 cut(s)	75, 226, 517
Eco47III	AGCGCT	1 cut(s)	579
Eco52I	CGGCCG	1 cut(s)	487
Eco57I	CTGAAG	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	256
EcoNI	CCTNNNNNAGG	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	75
EcoRII	CCWGG	2 cut(s)	380, 927
EcoT14I	CCWWGG	1 cut(s)	222
EcoT22I	ATGCAT	1 cut(s)	204
EgeI	GGCGCC	1 cut(s)	290
EheI	GGCGCC	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	3 cut(s)	73, 202, 397
FaiI	YATR	4 cut(s)	71, 200, 395, 774
FaqI	GGGAC	2 cut(s)	61, 235
FatI	CATG	3 cut(s)	69, 198, 393
FokI	GGATG	1 cut(s)	695
FspBI	CTAG	1 cut(s)	819
GlaI	GCGC	2 cut(s)	290, 579
HaeII	RGCGCY	2 cut(s)	292, 581
HaeIII	GGCC	2 cut(s)	489, 756
HapII	CCGG	3 cut(s)	158, 520, 753
HhaI	GCGC	2 cut(s)	291, 580
Hin1I	GRCGYC	1 cut(s)	289
Hin1II	CATG	3 cut(s)	73, 202, 397
Hin6I	GCGC	2 cut(s)	289, 578
HinP1I	GCGC	2 cut(s)	289, 578
HindIII	AAGCTT	1 cut(s)	89
HpaII	CCGG	3 cut(s)	158, 520, 753
HphI	GGTGA	3 cut(s)	131, 352, 683
Hpy166II	GTNNAC	3 cut(s)	229, 784, 859
Hpy188I	TCNGA	9 cut(s)	105, 355, 478, 496, 504, 566, 584, 740, 952
Hpy188III	TCNNGA	2 cut(s)	212, 520
Hpy8I	GTNNAC	3 cut(s)	229, 784, 859
Hpy99I	CGWCG	2 cut(s)	169, 236
HpyAV	CCTTC	2 cut(s)	451, 662
HpyCH4III	ACNGT	4 cut(s)	39, 421, 744, 946
HpyCH4V	TGCA	4 cut(s)	21, 30, 202, 890
HpyF10VI	GCNNNNNNNGC	8 cut(s)	27, 115, 118, 124, 127, 130, 133, 586
HpyF3I	CTNAG	1 cut(s)	146
Hsp92I	GRCGYC	1 cut(s)	289
Hsp92II	CATG	3 cut(s)	73, 202, 397
HspAI	GCGC	2 cut(s)	289, 578
KasI	GGCGCC	1 cut(s)	288
Kpn2I	TCCGGA	1 cut(s)	519
Kzo9I	GATC	5 cut(s)	24, 278, 504, 511, 566
Lsp1109I	GCAGC	5 cut(s)	136, 139, 142, 145, 306
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	819
MaeIII	GTNAC	5 cut(s)	65, 149, 551, 599, 686
MalI	GATC	5 cut(s)	26, 280, 506, 513, 568
MboI	GATC	5 cut(s)	24, 278, 504, 511, 566
MflI	RGATCY	2 cut(s)	24, 278
MhlI	GDGCHC	2 cut(s)	591, 728
MluCI	AATT	5 cut(s)	796, 829, 850, 862, 935
Mly113I	GGCGCC	1 cut(s)	289
MlyI	GAGTC	6 cut(s)	170, 257, 455, 482, 532, 607
MmeI	TCCRAC	1 cut(s)	501
Mph1103I	ATGCAT	1 cut(s)	204
MroI	TCCGGA	1 cut(s)	519
MseI	TTAA	2 cut(s)	828, 955
MslI	CAYNNNNRTG	1 cut(s)	721
MspA1I	CMGCKG	2 cut(s)	319, 483
MspI	CCGG	3 cut(s)	158, 520, 753
MspR9I	CCNGG	2 cut(s)	382, 929
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	2 cut(s)	382, 929
MvnI	CGCG	1 cut(s)	271
MwoI	GCNNNNNNNGC	8 cut(s)	27, 115, 118, 124, 127, 130, 133, 586
NarI	GGCGCC	1 cut(s)	289
NdeII	GATC	5 cut(s)	24, 278, 504, 511, 566
NlaIII	CATG	3 cut(s)	73, 202, 397
NlaIV	GGNNCC	3 cut(s)	77, 290, 518
NmuCI	GTSAC	3 cut(s)	65, 551, 599
NsiI	ATGCAT	1 cut(s)	204
NspI	RCATGY	1 cut(s)	202
PaeI	GCATGC	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	3 cut(s)	161, 237, 320
PctI	GAATGC	1 cut(s)	202
PfeI	GAWTC	4 cut(s)	15, 215, 706, 749
PleI	GAGTC	6 cut(s)	169, 256, 454, 481, 531, 606
PluTI	GGCGCC	1 cut(s)	292
PpsI	GAGTC	6 cut(s)	169, 256, 454, 481, 531, 606
PpuMI	RGGWCCY	1 cut(s)	75
Psp5II	RGGWCCY	1 cut(s)	75
Psp6I	CCWGG	2 cut(s)	380, 927
PspGI	CCWGG	2 cut(s)	380, 927
PspN4I	GGNNCC	3 cut(s)	77, 290, 518
PspPI	GGNCC	3 cut(s)	75, 226, 517
PspPPI	RGGWCCY	1 cut(s)	75
PstNI	CAGNNNCTG	1 cut(s)	18
PsuI	RGATCY	2 cut(s)	24, 278
RsaI	GTAC	2 cut(s)	536, 783
RsaNI	GTAC	2 cut(s)	535, 782
RseI	CAYNNNNRTG	1 cut(s)	721
SaqAI	TTAA	2 cut(s)	828, 955
Sau3AI	GATC	5 cut(s)	24, 278, 504, 511, 566
Sau96I	GGNCC	3 cut(s)	75, 226, 517
SchI	GAGTC	6 cut(s)	170, 257, 455, 482, 532, 607
ScrFI	CCNGG	2 cut(s)	382, 929
SduI	GDGCHC	2 cut(s)	591, 728
SfaNI	GCATC	1 cut(s)	145
SfoI	GGCGCC	1 cut(s)	290
SinI	GGWCC	3 cut(s)	75, 226, 517
SmiMI	CAYNNNNRTG	1 cut(s)	721
SphI	GCATGC	1 cut(s)	202
Sse9I	AATT	5 cut(s)	796, 829, 850, 862, 935
SspDI	GGCGCC	1 cut(s)	288
SspMI	CTAG	1 cut(s)	819
StyD4I	CCNGG	2 cut(s)	380, 927
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	4 cut(s)	39, 421, 744, 946
TaqI	TCGA	4 cut(s)	182, 188, 327, 401
TasI	AATT	5 cut(s)	796, 829, 850, 862, 935
TatI	WGTACW	2 cut(s)	534, 781
TauI	GCSGC	8 cut(s)	112, 121, 124, 289, 294, 319, 486, 489
TfiI	GAWTC	4 cut(s)	15, 215, 706, 749
Tru1I	TTAA	2 cut(s)	828, 955
Tru9I	TTAA	2 cut(s)	828, 955
TscAI	CASTG	1 cut(s)	426
TseFI	GTSAC	3 cut(s)	65, 551, 599
TseI	GCWGC	5 cut(s)	124, 127, 130, 133, 319
Tsp45I	GTSAC	3 cut(s)	65, 551, 599
TspDTI	ATGAA	2 cut(s)	669, 930
TspGWI	ACGGA	1 cut(s)	439
TspRI	CASTG	1 cut(s)	426
VpaK11BI	GGWCC	3 cut(s)	75, 226, 517
XagI	CCTNNNNNAGG	1 cut(s)	190
XceI	RCATGY	1 cut(s)	202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	764
XspI	CTAG	1 cut(s)	819
Zsp2I	ATGCAT	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.