Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008314

Physical Location & Seq

Genomic Coordinates Forward (+)

41180837 .. 41183367

Gene Structure 2531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG216000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGCTCATTGATGAAATAGACTCGGTTTCAGCTTCTTCTTCTGATGATGATGAAGAAGAAGAACAAGGAGAAGGGGAAGAGGAAGAAGAAGAAGATGAAGAAGGTTTGTATTACGGGCTTAGAGAAAATCCAAAGAGGAGCATTCGATTAGTAGATCATGAGTTTTCTTTTGCTGTGGATGGTGGCTCTGTTGTTCTTCAGGACAGAGAGAGCGAGACCGAGTCATCCAAGAACCCAACTCGGAGACGGTCCAAGCGGACTCGGAAATCGGCCATGTTTGATCATCATCGTCATCATGACGATCATCAACAACATCAACATCAACTTCATAATCAATACCACCAGCATGATCCAAAGCTTAATCAACATCACCTAGAAGCCTTCAAGAAAATTAAGCTGAAAAACAAGATAGATTCTTGTGCTAATAATGTAGAGCCAGAACCGGTGAGTTCAATTTCTGATGCCACAACAGAGGAAGATGTAGCCTTTTGTCTCATGATGTTATCGAGAGACAAATGGAAAAAACAAGAAAAACAACAAGATGATCAAGACGAAGATGCTGAAGTTGAATTATATAGATCCCTGGACGACAGTGATGAATCCGAGGAACAACTGATCAAGTTTCAAAGAACAAAAAGTAGTCGGGGAAAGTACAAGTGCGAAACTTGCAAGAAAGTCTTCAAATCCTATCAAGCTCTTGGCGGGCACAGAGCGAGTCACAAGAAGATTAAAGCCGCCGCCGCCGCTGCTGCTAATCCAAAACCGAATCGCATTGTTTACGAGCCCGAACCCGACCCAAAAATTAACCACAATGCAGGCGGTTCTTCTTTCGCAAAAACCCATCAATGCCCTGTTTGTTTCAGAGTCTTCTCATCTGGGCAAGCGCTTGGTGGACACAAGAGATCACATGTGACTGGTTCTGCAGCCATTAATAACACTCATCATCATACTCCTCCTGTAAAAAGCTTGGCAAAGCTAGGTGACAATATGATAGATCTTAATCTTCCTGCTCCTGTTGATGATGATGAGATGAGCCAAATCGAGATTTCTGCGGTTTCTGATGCTGAATTTGTGAACCCAATTAGGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

363

Amino Acids

41.18

Weight (kDa)

5.64

Isoelectric Point (pI)

60.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	218 - 242	2.1e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	281 - 303	8.3e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45120 AT3G60580
fragaria_vesca	FvH4_7g10990
malus_domestica	MD01G1182000.v1.1 MD02G1214100.v1.1 MD07G1114000.v1.1 MD07G1252200.v1.1
prunus_persica	Prupe.2G136700_v2.0.a1 Prupe.2G275700_v2.0.a1
pyrus_communis	pycom01g19180 pycom07g09900 pycom07g22460 pycom12659g00040
rosa_chinensis	RchiOBHm_Chr1g0348921
rosa_laevigata	RLG00000028616
rosa_multiflora	Rmu_sc0000106.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306520
rosa_rugosa	Rorug01G0198500.1
rosa_samantha	Rh1AG216000 Rh1BG182100 Rh1CG200300 Rh1DG212000
rosa_wichuraiana	Rw1G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	256, 702, 735, 738, 741, 744, 819, 1052
AclWI	GGATC	2 cut(s)	344, 573
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	1067
AcuI	CTGAAG	2 cut(s)	182, 582
AfaI	GTAC	1 cut(s)	653
AfeI	AGCGCT	1 cut(s)	885
AflIII	ACRYGT	1 cut(s)	907
AgeI	ACCGGT	1 cut(s)	442
AgsI	TTSAA	5 cut(s)	385, 453, 569, 626, 682
AjnI	CCWGG	1 cut(s)	582
AluBI	AGCT	6 cut(s)	32, 358, 397, 695, 966, 976
AluI	AGCT	6 cut(s)	32, 358, 397, 695, 966, 976
Alw26I	GTCTC	4 cut(s)	209, 238, 497, 504
AlwI	GGATC	2 cut(s)	344, 573
Aor51HI	AGCGCT	1 cut(s)	885
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	3 cut(s)	746, 749, 923
ApoI	RAATTY	1 cut(s)	1067
AseI	ATTAAT	1 cut(s)	930
AsiGI	ACCGGT	1 cut(s)	442
Asp700I	GAANNNNTTC	1 cut(s)	677
AspLEI	GCGC	1 cut(s)	886
AspS9I	GGNCC	1 cut(s)	249
AsuHPI	GGTGA	3 cut(s)	362, 457, 992
AvaII	GGWCC	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	708
BanII	GRGCYC	1 cut(s)	786
BbsI	GAAGAC	2 cut(s)	670, 859
BbvI	GCAGC	3 cut(s)	733, 736, 935
BccI	CCATC	2 cut(s)	173, 849
BcgI	CGANNNNNNTGC	2 cut(s)	1031, 1065
BciT130I	CCWGG	1 cut(s)	584
BclI	TGATCA	3 cut(s)	280, 544, 615
BcoDI	GTCTC	4 cut(s)	209, 238, 497, 504
BfaI	CTAG	2 cut(s)	374, 977
BfmI	CTRYAG	1 cut(s)	921
BfoI	RGCGCY	1 cut(s)	887
BglII	AGATCT	1 cut(s)	994
BisI	GCNGC	7 cut(s)	735, 738, 741, 744, 747, 750, 924
BlsI	GCNGC	7 cut(s)	736, 739, 742, 745, 748, 751, 925
Bme1390I	CCNGG	1 cut(s)	584
Bme18I	GGWCC	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	584
BmsI	GCATC	3 cut(s)	451, 547, 1051
BpiI	GAAGAC	2 cut(s)	670, 859
BsaBI	GATNNNNATC	2 cut(s)	285, 999
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	582, 603
BsaWI	WCCGGW	1 cut(s)	442
Bse118I	RCCGGY	1 cut(s)	442
Bse1I	ACTGG	1 cut(s)	919
Bse8I	GATNNNNATC	2 cut(s)	285, 999
BseBI	CCWGG	1 cut(s)	584
BseDI	CCNNGG	2 cut(s)	582, 603
BseGI	GGATG	2 cut(s)	184, 224
BseJI	GATNNNNATC	2 cut(s)	285, 999
BseNI	ACTGG	1 cut(s)	919
BseRI	GAGGAG	2 cut(s)	151, 942
BseSI	GKGCMC	1 cut(s)	708
BseXI	GCAGC	3 cut(s)	733, 736, 935
BshFI	GGCC	1 cut(s)	272
BshTI	ACCGGT	1 cut(s)	442
BsiSI	CCGG	1 cut(s)	443
BsmAI	GTCTC	4 cut(s)	209, 238, 497, 504
BsmBI	CGTCTC	1 cut(s)	238
BsmI	GAATGC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	272
Bso31I	GGTCTC	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	708, 786
Bsp143I	GATC	9 cut(s)	154, 280, 301, 349, 544, 578, 615, 902, 994
BspACI	CCGC	8 cut(s)	256, 702, 735, 738, 741, 744, 819, 1052
BspANI	GGCC	1 cut(s)	272
BspHI	TCATGA	3 cut(s)	157, 295, 495
BspMAI	CTGCAG	1 cut(s)	925
BspPI	GGATC	2 cut(s)	344, 573
BspTNI	GGTCTC	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	442
BsrI	ACTGG	1 cut(s)	919
BssAI	RCCGGY	1 cut(s)	442
BssECI	CCNNGG	2 cut(s)	582, 603
BssMI	GATC	9 cut(s)	154, 280, 301, 349, 544, 578, 615, 902, 994
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	2 cut(s)	249, 593
Bst6I	CTCTTC	1 cut(s)	72
BstC8I	GCNNGC	3 cut(s)	704, 817, 882
BstDEI	CTNAG	1 cut(s)	119
BstF5I	GGATG	2 cut(s)	184, 224
BstH2I	RGCGCY	1 cut(s)	887
BstHHI	GCGC	1 cut(s)	886
BstKTI	GATC	9 cut(s)	157, 283, 304, 352, 547, 581, 618, 905, 997
BstMAI	GTCTC	4 cut(s)	209, 238, 497, 504
BstMBI	GATC	9 cut(s)	154, 280, 301, 349, 544, 578, 615, 902, 994
BstMWI	GCNNNNNNNGC	5 cut(s)	666, 740, 743, 746, 749
BstNI	CCWGG	1 cut(s)	584
BstNSI	RCATGY	1 cut(s)	911
BstSCI	CCNGG	1 cut(s)	582
BstSFI	CTRYAG	1 cut(s)	921
BstSLI	GKGCMC	1 cut(s)	708
BstV1I	GCAGC	3 cut(s)	733, 736, 935
BstV2I	GAAGAC	2 cut(s)	670, 859
BstX2I	RGATCY	2 cut(s)	578, 994
BstYI	RGATCY	2 cut(s)	578, 994
BsuRI	GGCC	1 cut(s)	272
BtsCI	GGATG	2 cut(s)	184, 224
BtsIMutI	CAGTG	1 cut(s)	598
Cac8I	GCNNGC	3 cut(s)	704, 817, 882
CciI	TCATGA	3 cut(s)	157, 295, 495
CfoI	GCGC	1 cut(s)	886
Cfr10I	RCCGGY	1 cut(s)	442
Cfr13I	GGNCC	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	652
CspAI	ACCGGT	1 cut(s)	442
CviAII	CATG	6 cut(s)	158, 274, 296, 347, 496, 908
CviQI	GTAC	1 cut(s)	652
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	9 cut(s)	156, 282, 303, 351, 546, 580, 617, 904, 996
DpnII	GATC	9 cut(s)	154, 280, 301, 349, 544, 578, 615, 902, 994
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	786
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	249
Eco47III	AGCGCT	1 cut(s)	885
Eco57I	CTGAAG	2 cut(s)	182, 582
EcoRII	CCWGG	1 cut(s)	582
EcoT38I	GRGCYC	1 cut(s)	786
Esp3I	CGTCTC	1 cut(s)	238
FaeI	CATG	6 cut(s)	161, 277, 299, 350, 499, 911
FalI	AAGNNNNNCTT	2 cut(s)	662, 694
FatI	CATG	6 cut(s)	157, 273, 295, 346, 495, 907
FauI	CCCGC	1 cut(s)	695
FbaI	TGATCA	3 cut(s)	280, 544, 615
Fnu4HI	GCNGC	7 cut(s)	735, 738, 741, 744, 747, 750, 924
FokI	GGATG	2 cut(s)	191, 211
FriOI	GRGCYC	1 cut(s)	786
Fsp4HI	GCNGC	7 cut(s)	735, 738, 741, 744, 747, 750, 924
FspBI	CTAG	2 cut(s)	374, 977
GlaI	GCGC	1 cut(s)	885
GluI	GCNGC	7 cut(s)	735, 738, 741, 744, 747, 750, 924
HaeII	RGCGCY	1 cut(s)	887
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	1 cut(s)	443
HhaI	GCGC	1 cut(s)	886
Hin1II	CATG	6 cut(s)	161, 277, 299, 350, 499, 911
Hin6I	GCGC	1 cut(s)	884
HinP1I	GCGC	1 cut(s)	884
HindIII	AAGCTT	2 cut(s)	356, 964
HinfI	GANTC	8 cut(s)	20, 221, 259, 413, 599, 715, 766, 864
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	3 cut(s)	362, 457, 992
Hpy166II	GTNNAC	3 cut(s)	778, 893, 1075
Hpy188I	TCNGA	7 cut(s)	43, 243, 264, 460, 604, 863, 1060
Hpy188III	TCNNGA	8 cut(s)	158, 200, 296, 385, 496, 507, 548, 1042
Hpy8I	GTNNAC	3 cut(s)	778, 893, 1075
HpyAV	CCTTC	3 cut(s)	65, 95, 391
HpyCH4III	ACNGT	2 cut(s)	249, 593
HpyCH4V	TGCA	3 cut(s)	669, 815, 923
HpyF10VI	GCNNNNNNNGC	5 cut(s)	666, 740, 743, 746, 749
HpyF3I	CTNAG	1 cut(s)	119
Hsp92II	CATG	6 cut(s)	161, 277, 299, 350, 499, 911
HspAI	GCGC	1 cut(s)	884
Ksp22I	TGATCA	3 cut(s)	280, 544, 615
Kzo9I	GATC	9 cut(s)	154, 280, 301, 349, 544, 578, 615, 902, 994
LmnI	GCTCC	2 cut(s)	138, 1015
Lsp1109I	GCAGC	3 cut(s)	733, 736, 935
LweI	GCATC	3 cut(s)	451, 547, 1051
MaeI	CTAG	2 cut(s)	374, 977
MaeIII	GTNAC	3 cut(s)	716, 910, 980
MalI	GATC	9 cut(s)	156, 282, 303, 351, 546, 580, 617, 904, 996
MboI	GATC	9 cut(s)	154, 280, 301, 349, 544, 578, 615, 902, 994
MflI	RGATCY	2 cut(s)	578, 994
MhlI	GDGCHC	2 cut(s)	708, 786
MluCI	AATT	6 cut(s)	390, 453, 569, 801, 1067, 1080
MlyI	GAGTC	5 cut(s)	14, 230, 253, 724, 873
MnlI	CCTC	5 cut(s)	73, 129, 466, 598, 963
MroXI	GAANNNNTTC	1 cut(s)	677
MseI	TTAA	6 cut(s)	360, 393, 729, 804, 930, 999
MslI	CAYNNNNRTG	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	746
MspI	CCGG	1 cut(s)	443
MspR9I	CCNGG	1 cut(s)	584
Mva1269I	GAATGC	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	584
MwoI	GCNNNNNNNGC	5 cut(s)	666, 740, 743, 746, 749
NdeII	GATC	9 cut(s)	154, 280, 301, 349, 544, 578, 615, 902, 994
NlaIII	CATG	6 cut(s)	161, 277, 299, 350, 499, 911
NmuCI	GTSAC	3 cut(s)	716, 910, 980
NspI	RCATGY	1 cut(s)	911
PagI	TCATGA	3 cut(s)	157, 295, 495
PciI	ACATGT	1 cut(s)	907
PctI	GAATGC	1 cut(s)	141
PdmI	GAANNNNTTC	1 cut(s)	677
PfeI	GAWTC	3 cut(s)	413, 599, 766
PflFI	GACNNNGTC	1 cut(s)	220
PinAI	ACCGGT	1 cut(s)	442
PkrI	GCNGC	7 cut(s)	736, 739, 742, 745, 748, 751, 925
PleI	GAGTC	5 cut(s)	14, 229, 253, 723, 872
PpsI	GAGTC	5 cut(s)	14, 229, 253, 723, 872
PscI	ACATGT	1 cut(s)	907
PshBI	ATTAAT	1 cut(s)	930
Psp6I	CCWGG	1 cut(s)	582
PspGI	CCWGG	1 cut(s)	582
PspPI	GGNCC	1 cut(s)	249
PstI	CTGCAG	1 cut(s)	925
PsuI	RGATCY	2 cut(s)	578, 994
PsyI	GACNNNGTC	1 cut(s)	220
RsaI	GTAC	1 cut(s)	653
RsaNI	GTAC	1 cut(s)	652
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	6 cut(s)	360, 393, 729, 804, 930, 999
SatI	GCNGC	7 cut(s)	735, 738, 741, 744, 747, 750, 924
Sau3AI	GATC	9 cut(s)	154, 280, 301, 349, 544, 578, 615, 902, 994
Sau96I	GGNCC	1 cut(s)	249
SchI	GAGTC	5 cut(s)	14, 230, 253, 724, 873
ScrFI	CCNGG	1 cut(s)	584
SduI	GDGCHC	2 cut(s)	708, 786
SetI	ASST	9 cut(s)	34, 106, 360, 375, 399, 697, 968, 978, 982
SfaNI	GCATC	3 cut(s)	451, 547, 1051
SfcI	CTRYAG	1 cut(s)	921
SinI	GGWCC	1 cut(s)	249
SmiMI	CAYNNNNRTG	1 cut(s)	345
Sse9I	AATT	6 cut(s)	390, 453, 569, 801, 1067, 1080
SsiI	CCGC	8 cut(s)	256, 702, 735, 738, 741, 744, 819, 1052
SspMI	CTAG	2 cut(s)	374, 977
StyD4I	CCNGG	1 cut(s)	582
TaaI	ACNGT	2 cut(s)	249, 593
TaqI	TCGA	3 cut(s)	145, 506, 1041
TaqII	GACCGA	1 cut(s)	233
TasI	AATT	6 cut(s)	390, 453, 569, 801, 1067, 1080
TatI	WGTACW	1 cut(s)	651
TauI	GCSGC	4 cut(s)	737, 740, 743, 746
TfiI	GAWTC	3 cut(s)	413, 599, 766
Tru1I	TTAA	6 cut(s)	360, 393, 729, 804, 930, 999
Tru9I	TTAA	6 cut(s)	360, 393, 729, 804, 930, 999
TscAI	CASTG	1 cut(s)	598
TseFI	GTSAC	3 cut(s)	716, 910, 980
TseI	GCWGC	3 cut(s)	746, 749, 923
Tsp45I	GTSAC	3 cut(s)	716, 910, 980
TspDTI	ATGAA	5 cut(s)	27, 66, 111, 317, 612
TspRI	CASTG	1 cut(s)	598
Tth111I	GACNNNGTC	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	249
VspI	ATTAAT	1 cut(s)	930
XapI	RAATTY	1 cut(s)	1067
XceI	RCATGY	1 cut(s)	911
XmnI	GAANNNNTTC	1 cut(s)	677
XspI	CTAG	2 cut(s)	374, 977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.