Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012659

Orthogroup ID

OG0008314

Physical Location & Seq

Genomic Coordinates Reverse (-)

86470 .. 87627

Gene Structure 1158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12659g00040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGAGGAGCGGTGTAAGATTTGCATGAGGAGCTTCCCCAATGGCCGAGCCTTGCGGGGTCACATGAGGTCTTACGTCATGAACCATCCAATTCCTCCGAAACCGGAAGATGAAGACGAAGAAGCGAATCGAGAACAAACCCAGCTGACCATTGATGAGCTGTGCGATTTAGCTTCAGCTTCTTCTCCATCGTCTTCAGACAATGAAGAAGAACATGATGAAGATATGATTTATGGTTTGAGAGAGAATCCAAAGAGAAGCATAAAGCTAGTGGATCCTGAGTTTTCTTTTGTCATCCATGCTGGGTCTATTGTTCTTCAAGACAGAGAGAGCGAGACCGAGTCGTCCAAGAACCCAACTCGGAGACGATGTAAAAGAACACGAAAATCCTCCATGATGGCGCTTCATCATCATCAAAATCATAATCAGTATCACCATCATCAAAAACTAGAATCTTTCAAGAAAATTAAGGTCAAGAACAAGGTGGTCAGCAGCAAGGCCGATTCTTTCGATCCTGAACCTGTAAGTTCAATTTCTGATGCCACCAAAGAGGAAGATGTCGCCTTCTGCCTCATGATGTTGTCGAGAGACAAATGGAAAAAACAAGACCGCCACCACCACCATGAACAAGAACAAGAAAAAGACGATGAAGTGGAAAGATCAACGGAGGACACGGATGATTCTGAGGAGCATCTGATCAACTTACCCAGAACTAGAACTGCTCGAGGGAAAAACAAATGTGAAACGTGCAACAAAGTTTTTAAATCTTATCAGGCTCTTGGTGGTCACAGAGCAAGCCACAAGAAGAAGATTAAGGCTTTGAATGCGAACCCCATTAACAAGCCCGAATTGGAGCAAGAAAATTATAATGTGGCAGGAAATTCTTCCTCGGTGGCTGAACGAAAAATTCATGAATGCCCAGTTTGTTTTAGAGTTTTTTCCTCTGGTCAAGCGCTTGGCGGGCACAAAAGATCTCATGTGATGAGTGGTTCTGCAGCAGAAGCAAGCAATAGTAGTCCTCCATTGAAGAGTTTAAGTAAGCTTGGTGATAGTTTGATCGATCTTAATCTTCCTGCTCCTTTTGACGATGATGACATCAGCCAAATCGAGCTCTCTGCAGTTTCTGATTCAGAGTTTGTGAACCAAGTTAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

386

Amino Acids

43.8

Weight (kDa)

6.32

Isoelectric Point (pI)

62.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	246 - 270	1.8e-10	C2H2-type zinc finger
zf-C2H2_6	PF13912	304 - 326	8e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45120 AT3G60580
fragaria_vesca	FvH4_7g10990
malus_domestica	MD01G1182000.v1.1 MD02G1214100.v1.1 MD07G1114000.v1.1 MD07G1252200.v1.1
prunus_persica	Prupe.2G136700_v2.0.a1 Prupe.2G275700_v2.0.a1
pyrus_communis	pycom01g19180 pycom07g09900 pycom07g22460 pycom12659g00040
rosa_chinensis	RchiOBHm_Chr1g0348921
rosa_laevigata	RLG00000028616
rosa_multiflora	Rmu_sc0000106.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306520
rosa_rugosa	Rorug01G0198500.1
rosa_samantha	Rh1AG216000 Rh1BG182100 Rh1CG200300 Rh1DG212000
rosa_wichuraiana	Rw1G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	867
AasI	GACNNNNNNGTC	1 cut(s)	343
AccBSI	CCGCTC	1 cut(s)	10
AciI	CCGC	4 cut(s)	10, 55, 610, 960
AclWI	GGATC	3 cut(s)	269, 282, 506
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	2 cut(s)	880, 906
AcuI	CTGAAG	2 cut(s)	159, 180
AfeI	AGCGCT	1 cut(s)	954
AgsI	TTSAA	5 cut(s)	320, 460, 531, 823, 1027
AluBI	AGCT	8 cut(s)	33, 145, 160, 173, 179, 268, 1042, 1111
AluI	AGCT	8 cut(s)	33, 145, 160, 173, 179, 268, 1042, 1111
Alw21I	GWGCWC	1 cut(s)	1113
Alw26I	GTCTC	3 cut(s)	329, 358, 582
AlwI	GGATC	3 cut(s)	269, 282, 506
AlwNI	CAGNNNCTG	1 cut(s)	1124
Ama87I	CYCGRG	1 cut(s)	723
Aor51HI	AGCGCT	1 cut(s)	954
AoxI	GGCC	2 cut(s)	43, 498
ApeKI	GCWGC	2 cut(s)	492, 995
ApoI	RAATTY	2 cut(s)	880, 906
Asp700I	GAANNNNTTC	1 cut(s)	883
AspLEI	GCGC	2 cut(s)	403, 955
AsuHPI	GGTGA	2 cut(s)	425, 1058
AvaI	CYCGRG	1 cut(s)	723
BaeGI	GKGCMC	1 cut(s)	966
BamHI	GGATCC	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	1113
BbsI	GAAGAC	2 cut(s)	120, 186
Bbv12I	GWGCWC	1 cut(s)	1113
BbvI	GCAGC	2 cut(s)	504, 1007
BccI	CCATC	4 cut(s)	93, 196, 391, 444
BcgI	CGANNNNNNTGC	2 cut(s)	1097, 1131
BclI	TGATCA	1 cut(s)	696
BcoDI	GTCTC	3 cut(s)	329, 358, 582
BfaI	CTAG	3 cut(s)	269, 449, 714
BfmI	CTRYAG	2 cut(s)	993, 1116
BfoI	RGCGCY	2 cut(s)	404, 956
BglII	AGATCT	1 cut(s)	971
BisI	GCNGC	2 cut(s)	493, 996
BlsI	GCNGC	2 cut(s)	494, 997
BmeT110I	CYCGRG	1 cut(s)	723
BmiI	GGNNCC	1 cut(s)	276
BmrI	ACTGGG	1 cut(s)	914
BmsI	GCATC	2 cut(s)	529, 700
BmuI	ACTGGG	1 cut(s)	914
BpiI	GAAGAC	2 cut(s)	120, 186
Bsa29I	ATCGAT	1 cut(s)	1059
BsaBI	GATNNNNATC	1 cut(s)	1065
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	888
BsaWI	WCCGGW	1 cut(s)	103
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 355, 385
Bse1I	ACTGG	1 cut(s)	920
Bse8I	GATNNNNATC	1 cut(s)	1065
BseCI	ATCGAT	1 cut(s)	1059
BseDI	CCNNGG	1 cut(s)	888
BseGI	GGATG	3 cut(s)	85, 294, 682
BseJI	GATNNNNATC	1 cut(s)	1065
BseMII	CTCAG	2 cut(s)	270, 675
BseNI	ACTGG	1 cut(s)	920
BseRI	GAGGAG	3 cut(s)	20, 43, 701
BseSI	GKGCMC	1 cut(s)	966
BseXI	GCAGC	2 cut(s)	504, 1007
BseYI	CCCAGC	2 cut(s)	141, 302
BshFI	GGCC	2 cut(s)	45, 500
BshVI	ATCGAT	1 cut(s)	1059
BsiHKAI	GWGCWC	1 cut(s)	1113
BsiHKCI	CYCGRG	1 cut(s)	723
BsiSI	CCGG	1 cut(s)	104
BsmAI	GTCTC	3 cut(s)	329, 358, 582
BsmBI	CGTCTC	1 cut(s)	358
BsmI	GAATGC	2 cut(s)	829, 920
BsnI	GGCC	2 cut(s)	45, 500
Bso31I	GGTCTC	1 cut(s)	329
BsoBI	CYCGRG	1 cut(s)	723
Bsp1286I	GDGCHC	2 cut(s)	966, 1113
Bsp143I	GATC	7 cut(s)	274, 511, 659, 696, 971, 1056, 1060
BspACI	CCGC	4 cut(s)	10, 55, 610, 960
BspANI	GGCC	2 cut(s)	45, 500
BspCNI	CTCAG	2 cut(s)	271, 676
BspDI	ATCGAT	1 cut(s)	1059
BspHI	TCATGA	3 cut(s)	78, 573, 910
BspLI	GGNNCC	1 cut(s)	276
BspMAI	CTGCAG	2 cut(s)	997, 1120
BspPI	GGATC	3 cut(s)	269, 282, 506
BspTNI	GGTCTC	1 cut(s)	329
BsrBI	CCGCTC	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	920
BssECI	CCNNGG	1 cut(s)	888
BssMI	GATC	7 cut(s)	274, 511, 659, 696, 971, 1056, 1060
Bst6I	CTCTTC	1 cut(s)	1022
BstC8I	GCNNGC	3 cut(s)	796, 962, 1006
BstDEI	CTNAG	2 cut(s)	279, 684
BstF5I	GGATG	3 cut(s)	85, 294, 682
BstH2I	RGCGCY	2 cut(s)	404, 956
BstHHI	GCGC	2 cut(s)	403, 955
BstKTI	GATC	7 cut(s)	277, 514, 662, 699, 974, 1059, 1063
BstMAI	GTCTC	3 cut(s)	329, 358, 582
BstMBI	GATC	7 cut(s)	274, 511, 659, 696, 971, 1056, 1060
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 824, 961, 1001
BstSFI	CTRYAG	2 cut(s)	993, 1116
BstSLI	GKGCMC	1 cut(s)	966
BstV1I	GCAGC	2 cut(s)	504, 1007
BstV2I	GAAGAC	2 cut(s)	120, 186
BstX2I	RGATCY	2 cut(s)	274, 971
BstYI	RGATCY	2 cut(s)	274, 971
Bsu15I	ATCGAT	1 cut(s)	1059
BsuRI	GGCC	2 cut(s)	45, 500
BsuTUI	ATCGAT	1 cut(s)	1059
BtsCI	GGATG	3 cut(s)	85, 294, 682
Cac8I	GCNNGC	3 cut(s)	796, 962, 1006
CaiI	CAGNNNCTG	1 cut(s)	1124
CciI	TCATGA	3 cut(s)	78, 573, 910
CfoI	GCGC	2 cut(s)	403, 955
ClaI	ATCGAT	1 cut(s)	1059
DdeI	CTNAG	2 cut(s)	279, 684
DpnI	GATC	7 cut(s)	276, 513, 661, 698, 973, 1058, 1062
DpnII	GATC	7 cut(s)	274, 511, 659, 696, 971, 1056, 1060
DraI	TTTAAA	1 cut(s)	763
DrdI	GACNNNNNNGTC	1 cut(s)	343
DseDI	GACNNNNNNGTC	1 cut(s)	343
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	1022
EarI	CTCTTC	1 cut(s)	1022
Ecl136II	GAGCTC	1 cut(s)	1111
Eco24I	GRGCYC	1 cut(s)	1113
Eco31I	GGTCTC	1 cut(s)	329
Eco47III	AGCGCT	1 cut(s)	954
Eco53kI	GAGCTC	1 cut(s)	1111
Eco57I	CTGAAG	2 cut(s)	159, 180
Eco88I	CYCGRG	1 cut(s)	723
EcoICRI	GAGCTC	1 cut(s)	1111
EcoT38I	GRGCYC	1 cut(s)	1113
Esp3I	CGTCTC	1 cut(s)	358
FauI	CCCGC	2 cut(s)	48, 953
FbaI	TGATCA	1 cut(s)	696
Fnu4HI	GCNGC	2 cut(s)	493, 996
FokI	GGATG	3 cut(s)	72, 281, 689
FriOI	GRGCYC	1 cut(s)	1113
Fsp4HI	GCNGC	2 cut(s)	493, 996
FspBI	CTAG	3 cut(s)	269, 449, 714
GlaI	GCGC	2 cut(s)	402, 954
GluI	GCNGC	2 cut(s)	493, 996
GsaI	CCCAGC	2 cut(s)	145, 306
HaeII	RGCGCY	2 cut(s)	404, 956
HaeIII	GGCC	2 cut(s)	45, 500
HapII	CCGG	1 cut(s)	104
HhaI	GCGC	2 cut(s)	403, 955
Hin6I	GCGC	2 cut(s)	401, 953
HinP1I	GCGC	2 cut(s)	401, 953
HindIII	AAGCTT	1 cut(s)	1040
HinfI	GANTC	7 cut(s)	127, 247, 341, 452, 503, 680, 1127
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	2 cut(s)	425, 1058
Hpy166II	GTNNAC	1 cut(s)	1141
Hpy188I	TCNGA	8 cut(s)	99, 199, 363, 538, 685, 696, 1126, 1132
Hpy8I	GTNNAC	1 cut(s)	1141
HpyAV	CCTTC	1 cut(s)	574
HpyCH4IV	ACGT	2 cut(s)	75, 746
HpyCH4V	TGCA	4 cut(s)	24, 750, 995, 1118
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 824, 961, 1001
HpyF3I	CTNAG	2 cut(s)	279, 684
HpySE526I	ACGT	2 cut(s)	75, 746
HspAI	GCGC	2 cut(s)	401, 953
Ksp22I	TGATCA	1 cut(s)	696
Kzo9I	GATC	7 cut(s)	274, 511, 659, 696, 971, 1056, 1060
LmnI	GCTCC	5 cut(s)	7, 30, 688, 853, 1081
Lsp1109I	GCAGC	2 cut(s)	504, 1007
LweI	GCATC	2 cut(s)	529, 700
MaeI	CTAG	3 cut(s)	269, 449, 714
MaeII	ACGT	2 cut(s)	75, 746
MaeIII	GTNAC	2 cut(s)	59, 785
MalI	GATC	7 cut(s)	276, 513, 661, 698, 973, 1058, 1062
MbiI	CCGCTC	1 cut(s)	10
MboI	GATC	7 cut(s)	274, 511, 659, 696, 971, 1056, 1060
MflI	RGATCY	2 cut(s)	274, 971
MhlI	GDGCHC	2 cut(s)	966, 1113
MluCI	AATT	7 cut(s)	90, 465, 531, 848, 862, 880, 906
MlyI	GAGTC	1 cut(s)	350
MroXI	GAANNNNTTC	1 cut(s)	883
MseI	TTAA	6 cut(s)	468, 762, 813, 837, 1034, 1065
MslI	CAYNNNNRTG	1 cut(s)	621
MspA1I	CMGCKG	1 cut(s)	145
MspI	CCGG	1 cut(s)	104
Mva1269I	GAATGC	2 cut(s)	829, 920
MwoI	GCNNNNNNNGC	4 cut(s)	30, 824, 961, 1001
NdeII	GATC	7 cut(s)	274, 511, 659, 696, 971, 1056, 1060
NlaIV	GGNNCC	1 cut(s)	276
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	2 cut(s)	59, 785
PaeR7I	CTCGAG	1 cut(s)	723
PagI	TCATGA	3 cut(s)	78, 573, 910
PctI	GAATGC	2 cut(s)	829, 920
PdmI	GAANNNNTTC	1 cut(s)	883
PfeI	GAWTC	6 cut(s)	127, 247, 452, 503, 680, 1127
PflFI	GACNNNGTC	1 cut(s)	340
PkrI	GCNGC	2 cut(s)	494, 997
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PsiI	TTATAA	1 cut(s)	867
Psp124BI	GAGCTC	1 cut(s)	1113
PspFI	CCCAGC	2 cut(s)	141, 302
PspN4I	GGNNCC	1 cut(s)	276
PspXI	VCTCGAGB	1 cut(s)	723
PstI	CTGCAG	2 cut(s)	997, 1120
PstNI	CAGNNNCTG	1 cut(s)	1124
PsuI	RGATCY	2 cut(s)	274, 971
PsyI	GACNNNGTC	1 cut(s)	340
PvuII	CAGCTG	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	621
SacI	GAGCTC	1 cut(s)	1113
SaqAI	TTAA	6 cut(s)	468, 762, 813, 837, 1034, 1065
SatI	GCNGC	2 cut(s)	493, 996
Sau3AI	GATC	7 cut(s)	274, 511, 659, 696, 971, 1056, 1060
SchI	GAGTC	1 cut(s)	350
SduI	GDGCHC	2 cut(s)	966, 1113
SfaNI	GCATC	2 cut(s)	529, 700
SfcI	CTRYAG	2 cut(s)	993, 1116
Sfr274I	CTCGAG	1 cut(s)	723
SlaI	CTCGAG	1 cut(s)	723
SmiMI	CAYNNNNRTG	1 cut(s)	621
SmlI	CTYRAG	1 cut(s)	723
SmoI	CTYRAG	1 cut(s)	723
Sse9I	AATT	7 cut(s)	90, 465, 531, 848, 862, 880, 906
SsiI	CCGC	4 cut(s)	10, 55, 610, 960
SspMI	CTAG	3 cut(s)	269, 449, 714
SstI	GAGCTC	1 cut(s)	1113
TaiI	ACGT	2 cut(s)	78, 749
TaqI	TCGA	6 cut(s)	130, 510, 584, 724, 1059, 1107
TaqII	GACCGA	1 cut(s)	353
TasI	AATT	7 cut(s)	90, 465, 531, 848, 862, 880, 906
TfiI	GAWTC	6 cut(s)	127, 247, 452, 503, 680, 1127
Tru1I	TTAA	6 cut(s)	468, 762, 813, 837, 1034, 1065
Tru9I	TTAA	6 cut(s)	468, 762, 813, 837, 1034, 1065
TseFI	GTSAC	2 cut(s)	59, 785
TseI	GCWGC	2 cut(s)	492, 995
Tsp45I	GTSAC	2 cut(s)	59, 785
TspDTI	ATGAA	9 cut(s)	95, 126, 219, 234, 395, 639, 663, 899, 927
TspGWI	ACGGA	2 cut(s)	680, 689
Tth111I	GACNNNGTC	1 cut(s)	340
XapI	RAATTY	2 cut(s)	880, 906
XhoI	CTCGAG	1 cut(s)	723
XmnI	GAANNNNTTC	1 cut(s)	883
XspI	CTAG	3 cut(s)	269, 449, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.