Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008314

Physical Location & Seq

Genomic Coordinates Reverse (-)

23803942 .. 23804906

Gene Structure 965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g22460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAGAAGCAGAGAATCTGCAAGATCTGCAACAAGCGGTTCTCCAATGGAAAAGCGATGGGGGGTCACATGATCGATCCCACCTCGCCAAGCTTCCTCTCCCACCAAAGCCGCAGTCGCCGCCGCAGCAGCAGCATCACCAACTCAGTGACTCGCCCGACCGTGGTCCACGATGGCGGAGACAGCGACAGCGAGTCCCACCCGCGAAACCCAACTCATAGAAGATCCAAGCGGCGCCGCAAAGTGATTGGGAAATCGTCGCTGACACTGCCGTTCGAGGCAGAGCAGGTGAGTTCTGTTACCGATGCTTTTTCAACTGAAGATGTGGCTAGGTGTCTTATCATGCTCTCGATGGATAAATGGGATAAATGGGAAAAAGTAAAAGTAAAAAATGGGGTGGATGAGTCCGCGGATGAGGAGGAAGAGGATGAGTCGGACGACCGCGGCGGTTCTGGTTTTCGGTCACATACTCGGGTTCGGACTCGGGGGAAGTACAAGTGCGAGACTTGTGACAAAGTGTTTCGATCTTATCAAGCGCTCGGAGGGCACAGAGCGAGTCACAAGAAAATCCTTAAAACCCAAGTGTTTGATGACTATGAAGAGGAAGAAGATGAAGATTTTGAGGAAGATGATGGGCAGAATGGTAATTTGGCGGTGGTGGAGAATCACAGGATATTTGAGTGCTCTGTTTGTTTCAAACAGTTTGATTCTGGTCAAGCACTTGGTGGGCACAGAAAGGTACACTACTACAACAATTTGACCATCAATGCCCCTACTAGGAATATGAATTTGCCAGCGTCTTCTACTAATTTTGTGGACAATTTGGTCATTGACCTCAATCTCCCTGCACCAGAGGAGGAAGAAGAAGAGGTTAGCCAGGTTGAATTCTCAACAGTTTTCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

302

Amino Acids

34.23

Weight (kDa)

5.73

Isoelectric Point (pI)

65.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45120 AT3G60580
fragaria_vesca	FvH4_7g10990
malus_domestica	MD01G1182000.v1.1 MD02G1214100.v1.1 MD07G1114000.v1.1 MD07G1252200.v1.1
prunus_persica	Prupe.2G136700_v2.0.a1 Prupe.2G275700_v2.0.a1
pyrus_communis	pycom01g19180 pycom07g09900 pycom07g22460 pycom12659g00040
rosa_chinensis	RchiOBHm_Chr1g0348921
rosa_laevigata	RLG00000028616
rosa_multiflora	Rmu_sc0000106.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306520
rosa_rugosa	Rorug01G0198500.1
rosa_samantha	Rh1AG216000 Rh1BG182100 Rh1CG200300 Rh1DG212000
rosa_wichuraiana	Rw1G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	277
AasI	GACNNNNNNGTC	1 cut(s)	824
Acc36I	ACCTGC	1 cut(s)	277
AccB1I	GGYRCC	1 cut(s)	234
AccII	CGCG	3 cut(s)	205, 410, 444
AclWI	GGATC	2 cut(s)	71, 219
AcsI	RAATTY	2 cut(s)	787, 884
AcuI	CTGAAG	1 cut(s)	339
AcyI	GRCGYC	1 cut(s)	235
AdeI	CACNNNGTG	1 cut(s)	725
AfaI	GTAC	2 cut(s)	494, 741
AfeI	AGCGCT	1 cut(s)	537
AfiI	CCNNNNNNNGG	2 cut(s)	163, 777
AgsI	TTSAA	3 cut(s)	315, 697, 884
AhdI	GACNNNNNGTC	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	876
AjuI	GAANNNNNNNTTGG	2 cut(s)	632, 664
AluBI	AGCT	1 cut(s)	93
AluI	AGCT	1 cut(s)	93
Alw21I	GWGCWC	1 cut(s)	686
Alw26I	GTCTC	2 cut(s)	174, 497
AlwI	GGATC	2 cut(s)	71, 219
Ama87I	CYCGRG	2 cut(s)	471, 483
Aor51HI	AGCGCT	1 cut(s)	537
ApeKI	GCWGC	3 cut(s)	126, 129, 132
ApoI	RAATTY	2 cut(s)	787, 884
ArsI	GACNNNNNNTTYG	2 cut(s)	100, 132
AspLEI	GCGC	2 cut(s)	237, 538
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	130, 301
AvaI	CYCGRG	2 cut(s)	471, 483
AvaII	GGWCC	1 cut(s)	166
BaeGI	GKGCMC	2 cut(s)	549, 732
BanI	GGYRCC	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	792
Bbv12I	GWGCWC	1 cut(s)	686
BbvI	GCAGC	3 cut(s)	138, 141, 144
BccI	CCATC	5 cut(s)	52, 167, 346, 626, 770
BceAI	ACGGC	1 cut(s)	256
BciT130I	CCWGG	1 cut(s)	878
BcoDI	GTCTC	2 cut(s)	174, 497
BfaI	CTAG	2 cut(s)	330, 777
BfoI	RGCGCY	2 cut(s)	238, 539
BfuAI	ACCTGC	1 cut(s)	277
BglII	AGATCT	1 cut(s)	24
BisI	GCNGC	9 cut(s)	112, 121, 124, 127, 130, 133, 233, 238, 445
BlsI	GCNGC	9 cut(s)	113, 122, 125, 128, 131, 134, 234, 239, 446
Bme1390I	CCNGG	1 cut(s)	878
Bme18I	GGWCC	1 cut(s)	166
BmeRI	GACNNNNNGTC	1 cut(s)	193
BmeT110I	CYCGRG	2 cut(s)	471, 483
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	236
BmrFI	CCNGG	1 cut(s)	878
BmsI	GCATC	2 cut(s)	144, 295
BoxI	GACNNNNGTC	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	792
Bsa29I	ATCGAT	1 cut(s)	75
BsaHI	GRCGYC	1 cut(s)	235
BsaJI	CCNNGG	3 cut(s)	162, 408, 442
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 777
BseBI	CCWGG	1 cut(s)	878
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	3 cut(s)	162, 408, 442
BseGI	GGATG	3 cut(s)	406, 418, 433
BseLI	CCNNNNNNNGG	2 cut(s)	163, 777
BseMII	CTCAG	1 cut(s)	159
BseRI	GAGGAG	2 cut(s)	431, 869
BseSI	GKGCMC	2 cut(s)	549, 732
BseXI	GCAGC	3 cut(s)	138, 141, 144
BsgI	GTGCAG	1 cut(s)	831
Bsh1236I	CGCG	3 cut(s)	205, 410, 444
Bsh1285I	CGRYCG	2 cut(s)	162, 442
BshNI	GGYRCC	1 cut(s)	234
BshVI	ATCGAT	1 cut(s)	75
BsiEI	CGRYCG	2 cut(s)	162, 442
BsiHKAI	GWGCWC	1 cut(s)	686
BsiHKCI	CYCGRG	2 cut(s)	471, 483
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	2 cut(s)	163, 777
BsmAI	GTCTC	2 cut(s)	174, 497
BsmFI	GGGAC	1 cut(s)	181
BsoBI	CYCGRG	2 cut(s)	471, 483
Bsp1286I	GDGCHC	3 cut(s)	549, 686, 732
Bsp143I	GATC	5 cut(s)	24, 72, 76, 224, 524
BspCNI	CTCAG	1 cut(s)	158
BspDI	ATCGAT	1 cut(s)	75
BspFNI	CGCG	3 cut(s)	205, 410, 444
BspLI	GGNNCC	1 cut(s)	236
BspMI	ACCTGC	1 cut(s)	277
BspPI	GGATC	2 cut(s)	71, 219
BspT107I	GGYRCC	1 cut(s)	234
BssECI	CCNNGG	3 cut(s)	162, 408, 442
BssMI	GATC	5 cut(s)	24, 72, 76, 224, 524
BssNI	GRCGYC	1 cut(s)	235
Bst2UI	CCWGG	1 cut(s)	878
Bst4CI	ACNGT	3 cut(s)	163, 702, 895
Bst6I	CTCTTC	3 cut(s)	417, 594, 861
BstACI	GRCGYC	1 cut(s)	235
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	795
BstDEI	CTNAG	1 cut(s)	145
BstDSI	CCRYGG	3 cut(s)	162, 408, 442
BstF5I	GGATG	3 cut(s)	406, 418, 433
BstFNI	CGCG	3 cut(s)	205, 410, 444
BstH2I	RGCGCY	2 cut(s)	238, 539
BstHHI	GCGC	2 cut(s)	237, 538
BstKTI	GATC	5 cut(s)	27, 75, 79, 227, 527
BstMAI	GTCTC	2 cut(s)	174, 497
BstMBI	GATC	5 cut(s)	24, 72, 76, 224, 524
BstMCI	CGRYCG	2 cut(s)	162, 442
BstMWI	GCNNNNNNNGC	9 cut(s)	27, 117, 120, 126, 129, 132, 183, 268, 544
BstNI	CCWGG	1 cut(s)	878
BstPAI	GACNNNNGTC	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	876
BstSLI	GKGCMC	2 cut(s)	549, 732
BstUI	CGCG	3 cut(s)	205, 410, 444
BstV1I	GCAGC	3 cut(s)	138, 141, 144
BstV2I	GAAGAC	1 cut(s)	792
BstX2I	RGATCY	2 cut(s)	24, 224
BstYI	RGATCY	2 cut(s)	24, 224
Bsu15I	ATCGAT	1 cut(s)	75
BsuTUI	ATCGAT	1 cut(s)	75
BtgI	CCRYGG	3 cut(s)	162, 408, 442
BtgZI	GCGATG	1 cut(s)	71
BtsCI	GGATG	3 cut(s)	406, 418, 433
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	2 cut(s)	153, 266
BveI	ACCTGC	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	795
CfoI	GCGC	2 cut(s)	237, 538
Cfr13I	GGNCC	1 cut(s)	166
Cfr42I	CCGCGG	2 cut(s)	411, 445
ClaI	ATCGAT	1 cut(s)	75
CseI	GACGC	1 cut(s)	786
Csp6I	GTAC	2 cut(s)	493, 740
CviAII	CATG	2 cut(s)	70, 343
CviJI	RGCY	4 cut(s)	93, 111, 329, 876
CviKI_1	RGCY	4 cut(s)	93, 111, 329, 876
CviQI	GTAC	2 cut(s)	493, 740
DdeI	CTNAG	1 cut(s)	145
DinI	GGCGCC	1 cut(s)	236
DpnI	GATC	5 cut(s)	26, 74, 78, 226, 526
DpnII	GATC	5 cut(s)	24, 72, 76, 224, 524
DraIII	CACNNNGTG	1 cut(s)	725
DrdI	GACNNNNNNGTC	1 cut(s)	824
DriI	GACNNNNNGTC	1 cut(s)	193
DseDI	GACNNNNNNGTC	1 cut(s)	824
Eam1104I	CTCTTC	3 cut(s)	417, 594, 861
Eam1105I	GACNNNNNGTC	1 cut(s)	193
EarI	CTCTTC	3 cut(s)	417, 594, 861
EciI	GGCGGA	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	166
Eco47III	AGCGCT	1 cut(s)	537
Eco57I	CTGAAG	1 cut(s)	339
Eco88I	CYCGRG	2 cut(s)	471, 483
EcoRI	GAATTC	1 cut(s)	884
EcoRII	CCWGG	1 cut(s)	876
EgeI	GGCGCC	1 cut(s)	236
EheI	GGCGCC	1 cut(s)	236
FaeI	CATG	2 cut(s)	73, 346
FaiI	YATR	6 cut(s)	71, 219, 344, 468, 597, 785
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	2 cut(s)	69, 342
FauI	CCCGC	1 cut(s)	210
Fnu4HI	GCNGC	9 cut(s)	112, 121, 124, 127, 130, 133, 233, 238, 445
FokI	GGATG	3 cut(s)	413, 425, 440
Fsp4HI	GCNGC	9 cut(s)	112, 121, 124, 127, 130, 133, 233, 238, 445
FspBI	CTAG	2 cut(s)	330, 777
GlaI	GCGC	2 cut(s)	236, 537
GluI	GCNGC	9 cut(s)	112, 121, 124, 127, 130, 133, 233, 238, 445
HaeII	RGCGCY	2 cut(s)	238, 539
HgaI	GACGC	1 cut(s)	786
HhaI	GCGC	2 cut(s)	237, 538
Hin1I	GRCGYC	1 cut(s)	235
Hin1II	CATG	2 cut(s)	73, 346
Hin6I	GCGC	2 cut(s)	235, 536
HinP1I	GCGC	2 cut(s)	235, 536
HindIII	AAGCTT	1 cut(s)	91
HinfI	GANTC	9 cut(s)	15, 151, 194, 404, 431, 481, 556, 664, 707
HphI	GGTGA	2 cut(s)	130, 301
Hpy166II	GTNNAC	3 cut(s)	169, 742, 817
Hpy188I	TCNGA	3 cut(s)	436, 480, 542
Hpy188III	TCNNGA	1 cut(s)	349
Hpy8I	GTNNAC	3 cut(s)	169, 742, 817
Hpy99I	CGWCG	1 cut(s)	262
HpyCH4III	ACNGT	3 cut(s)	163, 702, 895
HpyCH4V	TGCA	3 cut(s)	21, 30, 848
HpyF10VI	GCNNNNNNNGC	9 cut(s)	27, 117, 120, 126, 129, 132, 183, 268, 544
HpyF3I	CTNAG	1 cut(s)	145
Hsp92I	GRCGYC	1 cut(s)	235
Hsp92II	CATG	2 cut(s)	73, 346
HspAI	GCGC	2 cut(s)	235, 536
KasI	GGCGCC	1 cut(s)	234
KspI	CCGCGG	2 cut(s)	411, 445
Kzo9I	GATC	5 cut(s)	24, 72, 76, 224, 524
LpnPI	CCDG	9 cut(s)	272, 438, 655, 696, 807, 858, 863, 864, 890
Lsp1109I	GCAGC	3 cut(s)	138, 141, 144
LweI	GCATC	2 cut(s)	144, 295
MaeI	CTAG	2 cut(s)	330, 777
MaeIII	GTNAC	6 cut(s)	65, 148, 298, 462, 509, 557
MalI	GATC	5 cut(s)	26, 74, 78, 226, 526
MboI	GATC	5 cut(s)	24, 72, 76, 224, 524
MflI	RGATCY	2 cut(s)	24, 224
MhlI	GDGCHC	3 cut(s)	549, 686, 732
MluCI	AATT	6 cut(s)	646, 754, 787, 808, 820, 884
Mly113I	GGCGCC	1 cut(s)	235
MlyI	GAGTC	6 cut(s)	145, 203, 413, 440, 475, 565
MmeI	TCCRAC	1 cut(s)	414
MseI	TTAA	2 cut(s)	573, 904
MspA1I	CMGCKG	2 cut(s)	410, 444
MspR9I	CCNGG	1 cut(s)	878
MvaI	CCWGG	1 cut(s)	878
MvnI	CGCG	3 cut(s)	205, 410, 444
MwoI	GCNNNNNNNGC	9 cut(s)	27, 117, 120, 126, 129, 132, 183, 268, 544
NarI	GGCGCC	1 cut(s)	235
NdeII	GATC	5 cut(s)	24, 72, 76, 224, 524
NlaIII	CATG	2 cut(s)	73, 346
NlaIV	GGNNCC	1 cut(s)	236
NmuCI	GTSAC	5 cut(s)	65, 148, 462, 509, 557
PaqCI	CACCTGC	1 cut(s)	277
PfeI	GAWTC	3 cut(s)	15, 664, 707
PkrI	GCNGC	9 cut(s)	113, 122, 125, 128, 131, 134, 234, 239, 446
PleI	GAGTC	6 cut(s)	145, 202, 412, 439, 475, 564
PluTI	GGCGCC	1 cut(s)	238
PpsI	GAGTC	6 cut(s)	145, 202, 412, 439, 475, 564
PshAI	GACNNNNGTC	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	876
PspGI	CCWGG	1 cut(s)	876
PspN4I	GGNNCC	1 cut(s)	236
PspPI	GGNCC	1 cut(s)	166
PsuI	RGATCY	2 cut(s)	24, 224
RsaI	GTAC	2 cut(s)	494, 741
RsaNI	GTAC	2 cut(s)	493, 740
SacII	CCGCGG	2 cut(s)	411, 445
SaqAI	TTAA	2 cut(s)	573, 904
SatI	GCNGC	9 cut(s)	112, 121, 124, 127, 130, 133, 233, 238, 445
Sau3AI	GATC	5 cut(s)	24, 72, 76, 224, 524
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	6 cut(s)	145, 203, 413, 440, 475, 565
ScrFI	CCNGG	1 cut(s)	878
SduI	GDGCHC	3 cut(s)	549, 686, 732
SetI	ASST	8 cut(s)	86, 95, 291, 335, 741, 837, 873, 882
SfaNI	GCATC	2 cut(s)	144, 295
SfoI	GGCGCC	1 cut(s)	236
Sfr303I	CCGCGG	2 cut(s)	411, 445
SgrBI	CCGCGG	2 cut(s)	411, 445
SinI	GGWCC	1 cut(s)	166
Sse9I	AATT	6 cut(s)	646, 754, 787, 808, 820, 884
SspDI	GGCGCC	1 cut(s)	234
SspMI	CTAG	2 cut(s)	330, 777
StyD4I	CCNGG	1 cut(s)	876
TaaI	ACNGT	3 cut(s)	163, 702, 895
TaqI	TCGA	5 cut(s)	75, 276, 350, 523, 900
TaqII	GACCGA	1 cut(s)	450
TasI	AATT	6 cut(s)	646, 754, 787, 808, 820, 884
TatI	WGTACW	1 cut(s)	492
TauI	GCSGC	6 cut(s)	114, 123, 126, 235, 240, 447
TfiI	GAWTC	3 cut(s)	15, 664, 707
Tru1I	TTAA	2 cut(s)	573, 904
Tru9I	TTAA	2 cut(s)	573, 904
TscAI	CASTG	2 cut(s)	153, 273
TseFI	GTSAC	5 cut(s)	65, 148, 462, 509, 557
TseI	GCWGC	3 cut(s)	126, 129, 132
Tsp45I	GTSAC	5 cut(s)	65, 148, 462, 509, 557
TspDTI	ATGAA	3 cut(s)	612, 627, 800
TspRI	CASTG	2 cut(s)	153, 273
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	2 cut(s)	787, 884
XspI	CTAG	2 cut(s)	330, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.