Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008314

Physical Location & Seq

Genomic Coordinates Reverse (-)

32009653 .. 32010606

Gene Structure 954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1252200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAGAAGCAGAGAATCTGCAAGATCTGCAACAAGCGGTTCTCCAATGGAAAAGCGATGGGGGGTCACATGAGATCCCACCTCGCCAAGCTTCCTCTCCCTCCAAAGCCGCAGTCGCCGCCGCAGCAGCAGCATCAGCAACTCAGTGACTCGCCCGAGTCGTCGTCCCCTCCATTTTCGACTTCGAACAGGGCCATGCATTCTTCTCTGGATTCAGCCGTGGTCCACGATGGCGGAGACAGCGACAGCGAGTCCCACCCGCGAAACCCAACTCATAGAAGATCCAAGCGGCGCCGCAAAGTGATTGGGAAATCGTCGCTGACAATGCCGTTCGAGGCAGAGCAGGTGAGTTCTGTTACCGATGCTTTTTCAACTGAAGATGTGGCTATGTGTCTTATCATGCTCTCGATGGATAAATGGGAAAAAGTAAAAGTAAAAAATGGGGTGGATGAATCCGCGGATGAGGAGGAAGAGGATGAATCCGACGACCGAGGCGGTTTTGGTTTTCGGTCACATGCTCGGGTTCGGACTCGGGGGAAGTACAAGTGTGAGACTTGTGACAAAGTGTTTATATCTTATCAAGCGCTCGGAGGGCACAGAGCGAGTCACAAGAAAATCCTGAAAACCCAAGTGTTTGATGACTATGAAGAGGAAGAAGATGAAGATTTTGAGGAAGATGATGGGCAGAATGGTAATTTGGCGGTGGTGGAGAATCACAGGACATTTGAGTGCTCTGTTTGTTTCAAACAGTTCGATTCTGGTCAAGCACTTGGTGGGCACAAAAAAGTACACTACTACAACAATTTGACCACCAATGCCCCTACTAGGAATGTTAATTTGCCATCGTCTTCTACTAATTTTGTGGACAATTTGGTCATTGACCTCAATCTCCCTGCACCAGAGGAGGAAGAAGAGGAGGTTAGCCAGGTTGAATTCTCAACAGTTTCCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

318

Amino Acids

35.61

Weight (kDa)

5.43

Isoelectric Point (pI)

70.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	6 - 29	9.2e-09	C2H2-type zinc finger
zf-C2H2_6	PF13912	181 - 205	1.4e-10	C2H2-type zinc finger
zf-C2H2_6	PF13912	242 - 264	1.9e-08	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45120 AT3G60580
fragaria_vesca	FvH4_7g10990
malus_domestica	MD01G1182000.v1.1 MD02G1214100.v1.1 MD07G1114000.v1.1 MD07G1252200.v1.1
prunus_persica	Prupe.2G136700_v2.0.a1 Prupe.2G275700_v2.0.a1
pyrus_communis	pycom01g19180 pycom07g09900 pycom07g22460 pycom12659g00040
rosa_chinensis	RchiOBHm_Chr1g0348921
rosa_laevigata	RLG00000028616
rosa_multiflora	Rmu_sc0000106.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306520
rosa_rugosa	Rorug01G0198500.1
rosa_samantha	Rh1AG216000 Rh1BG182100 Rh1CG200300 Rh1DG212000
rosa_wichuraiana	Rw1G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	334
AasI	GACNNNNNNGTC	1 cut(s)	872
Acc36I	ACCTGC	1 cut(s)	334
AccB1I	GGYRCC	1 cut(s)	291
AccII	CGCG	2 cut(s)	262, 458
AclWI	GGATC	2 cut(s)	69, 276
AcsI	RAATTY	1 cut(s)	932
AcuI	CTGAAG	1 cut(s)	396
AcyI	GRCGYC	1 cut(s)	292
AdeI	CACNNNGTG	1 cut(s)	773
AfaI	GTAC	2 cut(s)	542, 789
AfeI	AGCGCT	1 cut(s)	585
AfiI	CCNNNNNNNGG	1 cut(s)	825
AgsI	TTSAA	3 cut(s)	372, 745, 932
AhdI	GACNNNNNGTC	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	924
AjuI	GAANNNNNNNTTGG	2 cut(s)	680, 712
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw21I	GWGCWC	1 cut(s)	734
Alw26I	GTCTC	2 cut(s)	231, 545
AlwI	GGATC	2 cut(s)	69, 276
Ama87I	CYCGRG	3 cut(s)	155, 519, 531
Aor51HI	AGCGCT	1 cut(s)	585
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	3 cut(s)	124, 127, 130
ApoI	RAATTY	1 cut(s)	932
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspLEI	GCGC	2 cut(s)	294, 586
AspS9I	GGNCC	2 cut(s)	192, 223
AsuHPI	GGTGA	1 cut(s)	358
AsuII	TTCGAA	1 cut(s)	185
AvaI	CYCGRG	3 cut(s)	155, 519, 531
AvaII	GGWCC	1 cut(s)	223
BaeGI	GKGCMC	2 cut(s)	597, 780
BanI	GGYRCC	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	840
Bbv12I	GWGCWC	1 cut(s)	734
BbvI	GCAGC	3 cut(s)	136, 139, 142
BccI	CCATC	5 cut(s)	52, 224, 403, 674, 850
BceAI	ACGGC	2 cut(s)	203, 313
BciT130I	CCWGG	1 cut(s)	926
BcoDI	GTCTC	2 cut(s)	231, 545
BfaI	CTAG	1 cut(s)	825
BfoI	RGCGCY	2 cut(s)	295, 587
BfuAI	ACCTGC	1 cut(s)	334
BglII	AGATCT	1 cut(s)	24
BisI	GCNGC	8 cut(s)	110, 119, 122, 125, 128, 131, 290, 295
BlsI	GCNGC	8 cut(s)	111, 120, 123, 126, 129, 132, 291, 296
Bme1390I	CCNGG	1 cut(s)	926
Bme18I	GGWCC	1 cut(s)	223
BmeRI	GACNNNNNGTC	1 cut(s)	250
BmeT110I	CYCGRG	3 cut(s)	155, 519, 531
BmgT120I	GGNCC	2 cut(s)	192, 223
BmiI	GGNNCC	1 cut(s)	293
BmrFI	CCNGG	1 cut(s)	926
BmsI	GCATC	2 cut(s)	142, 352
BpiI	GAAGAC	1 cut(s)	840
Bpu14I	TTCGAA	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	292
BsaJI	CCNNGG	3 cut(s)	219, 456, 490
Bsc4I	CCNNNNNNNGG	1 cut(s)	825
BseBI	CCWGG	1 cut(s)	926
BseDI	CCNNGG	3 cut(s)	219, 456, 490
BseGI	GGATG	3 cut(s)	454, 466, 481
BseLI	CCNNNNNNNGG	1 cut(s)	825
BseMII	CTCAG	1 cut(s)	157
BseRI	GAGGAG	3 cut(s)	479, 917, 929
BseSI	GKGCMC	2 cut(s)	597, 780
BseXI	GCAGC	3 cut(s)	136, 139, 142
BsgI	GTGCAG	1 cut(s)	879
Bsh1236I	CGCG	2 cut(s)	262, 458
Bsh1285I	CGRYCG	1 cut(s)	490
BshFI	GGCC	1 cut(s)	194
BshNI	GGYRCC	1 cut(s)	291
BsiEI	CGRYCG	1 cut(s)	490
BsiHKAI	GWGCWC	1 cut(s)	734
BsiHKCI	CYCGRG	3 cut(s)	155, 519, 531
BslFI	GGGAC	2 cut(s)	151, 238
BslI	CCNNNNNNNGG	1 cut(s)	825
BsmAI	GTCTC	2 cut(s)	231, 545
BsmFI	GGGAC	2 cut(s)	151, 238
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	194
BsoBI	CYCGRG	3 cut(s)	155, 519, 531
Bsp119I	TTCGAA	1 cut(s)	185
Bsp1286I	GDGCHC	3 cut(s)	597, 734, 780
Bsp143I	GATC	3 cut(s)	24, 74, 281
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	1 cut(s)	156
BspFNI	CGCG	2 cut(s)	262, 458
BspLI	GGNNCC	1 cut(s)	293
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	2 cut(s)	69, 276
BspT104I	TTCGAA	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	291
BssECI	CCNNGG	3 cut(s)	219, 456, 490
BssMI	GATC	3 cut(s)	24, 74, 281
BssNI	GRCGYC	1 cut(s)	292
Bst2UI	CCWGG	1 cut(s)	926
Bst4CI	ACNGT	2 cut(s)	750, 943
Bst6I	CTCTTC	3 cut(s)	465, 642, 906
BstACI	GRCGYC	1 cut(s)	292
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstBI	TTCGAA	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	143
BstDSI	CCRYGG	2 cut(s)	219, 456
BstF5I	GGATG	3 cut(s)	454, 466, 481
BstFNI	CGCG	2 cut(s)	262, 458
BstH2I	RGCGCY	2 cut(s)	295, 587
BstHHI	GCGC	2 cut(s)	294, 586
BstKTI	GATC	3 cut(s)	27, 77, 284
BstMAI	GTCTC	2 cut(s)	231, 545
BstMBI	GATC	3 cut(s)	24, 74, 281
BstMCI	CGRYCG	1 cut(s)	490
BstNI	CCWGG	1 cut(s)	926
BstNSI	RCATGY	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	924
BstSLI	GKGCMC	2 cut(s)	597, 780
BstUI	CGCG	2 cut(s)	262, 458
BstV1I	GCAGC	3 cut(s)	136, 139, 142
BstV2I	GAAGAC	1 cut(s)	840
BstX2I	RGATCY	3 cut(s)	24, 74, 281
BstYI	RGATCY	3 cut(s)	24, 74, 281
BsuRI	GGCC	1 cut(s)	194
BtgI	CCRYGG	2 cut(s)	219, 456
BtgZI	GCGATG	1 cut(s)	71
BtsCI	GGATG	3 cut(s)	454, 466, 481
BtsIMutI	CAGTG	1 cut(s)	151
BveI	ACCTGC	1 cut(s)	334
CfoI	GCGC	2 cut(s)	294, 586
Cfr13I	GGNCC	2 cut(s)	192, 223
Cfr42I	CCGCGG	1 cut(s)	459
Csp6I	GTAC	2 cut(s)	541, 788
CviAII	CATG	4 cut(s)	70, 196, 400, 515
CviJI	RGCY	6 cut(s)	91, 109, 194, 218, 386, 924
CviKI_1	RGCY	6 cut(s)	91, 109, 194, 218, 386, 924
CviQI	GTAC	2 cut(s)	541, 788
DdeI	CTNAG	1 cut(s)	143
DinI	GGCGCC	1 cut(s)	293
DpnI	GATC	3 cut(s)	26, 76, 283
DpnII	GATC	3 cut(s)	24, 74, 281
DraIII	CACNNNGTG	1 cut(s)	773
DrdI	GACNNNNNNGTC	1 cut(s)	872
DriI	GACNNNNNGTC	1 cut(s)	250
DseDI	GACNNNNNNGTC	1 cut(s)	872
Eam1104I	CTCTTC	3 cut(s)	465, 642, 906
Eam1105I	GACNNNNNGTC	1 cut(s)	250
EarI	CTCTTC	3 cut(s)	465, 642, 906
EciI	GGCGGA	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	223
Eco47III	AGCGCT	1 cut(s)	585
Eco57I	CTGAAG	1 cut(s)	396
Eco88I	CYCGRG	3 cut(s)	155, 519, 531
EcoRI	GAATTC	1 cut(s)	932
EcoRII	CCWGG	1 cut(s)	924
EcoT22I	ATGCAT	1 cut(s)	201
EgeI	GGCGCC	1 cut(s)	293
EheI	GGCGCC	1 cut(s)	293
FaeI	CATG	4 cut(s)	73, 199, 403, 518
FaiI	YATR	8 cut(s)	71, 197, 276, 389, 401, 516, 572, 645
FaqI	GGGAC	2 cut(s)	151, 238
FatI	CATG	4 cut(s)	69, 195, 399, 514
FauI	CCCGC	1 cut(s)	267
Fnu4HI	GCNGC	8 cut(s)	110, 119, 122, 125, 128, 131, 290, 295
FokI	GGATG	3 cut(s)	461, 473, 488
Fsp4HI	GCNGC	8 cut(s)	110, 119, 122, 125, 128, 131, 290, 295
FspBI	CTAG	1 cut(s)	825
GlaI	GCGC	2 cut(s)	293, 585
GluI	GCNGC	8 cut(s)	110, 119, 122, 125, 128, 131, 290, 295
HaeII	RGCGCY	2 cut(s)	295, 587
HaeIII	GGCC	1 cut(s)	194
HhaI	GCGC	2 cut(s)	294, 586
Hin1I	GRCGYC	1 cut(s)	292
Hin1II	CATG	4 cut(s)	73, 199, 403, 518
Hin6I	GCGC	2 cut(s)	292, 584
HinP1I	GCGC	2 cut(s)	292, 584
HindIII	AAGCTT	1 cut(s)	89
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	3 cut(s)	226, 790, 865
Hpy188I	TCNGA	4 cut(s)	484, 528, 590, 949
Hpy188III	TCNNGA	3 cut(s)	209, 406, 619
Hpy8I	GTNNAC	3 cut(s)	226, 790, 865
Hpy99I	CGWCG	3 cut(s)	166, 319, 488
HpyCH4III	ACNGT	2 cut(s)	750, 943
HpyCH4V	TGCA	4 cut(s)	21, 30, 199, 896
HpyF3I	CTNAG	1 cut(s)	143
Hsp92I	GRCGYC	1 cut(s)	292
Hsp92II	CATG	4 cut(s)	73, 199, 403, 518
HspAI	GCGC	2 cut(s)	292, 584
KasI	GGCGCC	1 cut(s)	291
KspI	CCGCGG	1 cut(s)	459
Kzo9I	GATC	3 cut(s)	24, 74, 281
Lsp1109I	GCAGC	3 cut(s)	136, 139, 142
LweI	GCATC	2 cut(s)	142, 352
MaeI	CTAG	1 cut(s)	825
MaeIII	GTNAC	6 cut(s)	65, 146, 355, 510, 557, 605
MalI	GATC	3 cut(s)	26, 76, 283
MboI	GATC	3 cut(s)	24, 74, 281
MflI	RGATCY	3 cut(s)	24, 74, 281
MhlI	GDGCHC	3 cut(s)	597, 734, 780
MluCI	AATT	6 cut(s)	694, 802, 835, 856, 868, 932
Mly113I	GGCGCC	1 cut(s)	292
MlyI	GAGTC	5 cut(s)	143, 167, 260, 523, 613
MmeI	TCCRAC	1 cut(s)	507
Mph1103I	ATGCAT	1 cut(s)	201
MseI	TTAA	2 cut(s)	834, 952
MslI	CAYNNNNRTG	1 cut(s)	727
MspA1I	CMGCKG	1 cut(s)	458
MspR9I	CCNGG	1 cut(s)	926
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	926
MvnI	CGCG	2 cut(s)	262, 458
NarI	GGCGCC	1 cut(s)	292
NdeII	GATC	3 cut(s)	24, 74, 281
NlaIII	CATG	4 cut(s)	73, 199, 403, 518
NlaIV	GGNNCC	1 cut(s)	293
NmuCI	GTSAC	5 cut(s)	65, 146, 510, 557, 605
NsiI	ATGCAT	1 cut(s)	201
NspI	RCATGY	1 cut(s)	518
NspV	TTCGAA	1 cut(s)	185
PaqCI	CACCTGC	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
PctI	GAATGC	1 cut(s)	199
PfeI	GAWTC	6 cut(s)	15, 212, 452, 479, 712, 755
PkrI	GCNGC	8 cut(s)	111, 120, 123, 126, 129, 132, 291, 296
PleI	GAGTC	5 cut(s)	143, 166, 259, 523, 612
PluTI	GGCGCC	1 cut(s)	295
PpsI	GAGTC	5 cut(s)	143, 166, 259, 523, 612
Psp6I	CCWGG	1 cut(s)	924
PspGI	CCWGG	1 cut(s)	924
PspN4I	GGNNCC	1 cut(s)	293
PspPI	GGNCC	2 cut(s)	192, 223
PsuI	RGATCY	3 cut(s)	24, 74, 281
RsaI	GTAC	2 cut(s)	542, 789
RsaNI	GTAC	2 cut(s)	541, 788
RseI	CAYNNNNRTG	1 cut(s)	727
SacII	CCGCGG	1 cut(s)	459
SaqAI	TTAA	2 cut(s)	834, 952
SatI	GCNGC	8 cut(s)	110, 119, 122, 125, 128, 131, 290, 295
Sau3AI	GATC	3 cut(s)	24, 74, 281
Sau96I	GGNCC	2 cut(s)	192, 223
SchI	GAGTC	5 cut(s)	143, 167, 260, 523, 613
ScrFI	CCNGG	1 cut(s)	926
SduI	GDGCHC	3 cut(s)	597, 734, 780
SetI	ASST	6 cut(s)	84, 93, 348, 885, 921, 930
SfaNI	GCATC	2 cut(s)	142, 352
SfoI	GGCGCC	1 cut(s)	293
Sfr303I	CCGCGG	1 cut(s)	459
SfuI	TTCGAA	1 cut(s)	185
SgrBI	CCGCGG	1 cut(s)	459
SinI	GGWCC	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	727
Sse9I	AATT	6 cut(s)	694, 802, 835, 856, 868, 932
SspDI	GGCGCC	1 cut(s)	291
SspMI	CTAG	1 cut(s)	825
StyD4I	CCNGG	1 cut(s)	924
TaaI	ACNGT	2 cut(s)	750, 943
TaqI	TCGA	5 cut(s)	179, 185, 333, 407, 753
TaqII	GACCGA	2 cut(s)	498, 504
TasI	AATT	6 cut(s)	694, 802, 835, 856, 868, 932
TatI	WGTACW	2 cut(s)	540, 787
TauI	GCSGC	5 cut(s)	112, 121, 124, 292, 297
TfiI	GAWTC	6 cut(s)	15, 212, 452, 479, 712, 755
Tru1I	TTAA	2 cut(s)	834, 952
Tru9I	TTAA	2 cut(s)	834, 952
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	5 cut(s)	65, 146, 510, 557, 605
TseI	GCWGC	3 cut(s)	124, 127, 130
Tsp45I	GTSAC	5 cut(s)	65, 146, 510, 557, 605
TspDTI	ATGAA	4 cut(s)	465, 492, 660, 675
TspRI	CASTG	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	223
XapI	RAATTY	1 cut(s)	932
XceI	RCATGY	1 cut(s)	518
XspI	CTAG	1 cut(s)	825
Zsp2I	ATGCAT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.