Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008314

Physical Location & Seq

Genomic Coordinates Forward (+)

10285286 .. 10287707

Gene Structure 2422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g10990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGAGAGGCACAAGTGTAAGCTTTGCATGAGGAGCTTTTCTAATGGCAGAGCTTTAGGGGGTCACATGAGGTCTCACATGATGAACCTTCCGATTCATCAGAATCCACAAGGGGAGGAGGAAGATGCGCCAGTACATGATCAAATGCTCATTGATGAAATAGACTCAGTTTCAGCTTCTTCTTCTTCTGATGATGAAGAAGGGCATGGAGAAGAGGAAGAGGAAGATGAGGAAGGTTTGTATTACGGGCTTAGAGAGAATCCGAAGAGGAGCATTCGGTTAGTAGATCCTGAGTTTTCTTTTGCTGTTGAGTCTGGGTCTGTTGTTCTTCAGGACAGAGAGAGTGAGACCGAGTCGTCCAAGAACCCAACTCGGAGACGATCCAAGCGGACTCGGAAATCAGCCATGTTTGATCATCTTCAACATCACGATCATCAACAACTTCATAATCAATACCACCATCATCATCCAAAGCTTAATCAACATCACCAAGAAGCATTCAACAAAATTAAGCTGAAAAACAAGATAGATTCTTATGCTAATAATAATGTAGAGCCCGAACCGGTGAGTTCAATTTCTGATGCCACAACAGAGGAAGATGTAGCATTTTGTCTCATGATGTTATCCAGGGACAAATGGAAAAAACAAGACAAACAGCAACAAGAGGAACAAGATTATCAAGACGAGGATGTTGAAGTTGAATATAGATCTTTGGACGAAAGTGACGAATCCGAGGAGCAACTGATCAAGTTTCAAAGAACAAAAAGTAGTAGGGGAAAGTACAAGTGCGAAACTTGCAACAAAGTCTTCAAATCCTACCAAGCTCTTGGGGGACACAGAGCAAGTCACAAGAAGATTAAAGCCGCTTCCGCTGCCAATCCAAACCCGAATCGCATTGTTTACAAGCCCGAACCCGACCCAGAAATTAACCACAATGCAGGAAGTTCTTCTTTCGTAAAAACGCATGAATGCCCTGTTTGTTTCAGAGTCTTCTCATCTGGGCAAGCGCTTGGTGGACACAAGAGATCACATGTGACTGGTTCTGCAGCCATTAACTACACTCACCATCACACTCCATCTATGAAAAGCTTGGCAAAGCTTGGTGACAATATGATAGATCTTAATCTTCCTGCTCCTGTTGATGATGATGAGATGAGCCAAATCGAGCTTTCTGCGGTTTCTGATGCTGAATTTGTGAACCCAATTAGGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

405

Amino Acids

46.14

Weight (kDa)

5.84

Isoelectric Point (pI)

66.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	3 - 27	1.1e-06	C2H2-type zinc finger
zf-C2H2_6	PF13912	261 - 285	8.9e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	322 - 344	9.7e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45120 AT3G60580
fragaria_vesca	FvH4_7g10990
malus_domestica	MD01G1182000.v1.1 MD02G1214100.v1.1 MD07G1114000.v1.1 MD07G1252200.v1.1
prunus_persica	Prupe.2G136700_v2.0.a1 Prupe.2G275700_v2.0.a1
pyrus_communis	pycom01g19180 pycom07g09900 pycom07g22460 pycom12659g00040
rosa_chinensis	RchiOBHm_Chr1g0348921
rosa_laevigata	RLG00000028616
rosa_multiflora	Rmu_sc0000106.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306520
rosa_rugosa	Rorug01G0198500.1
rosa_samantha	Rh1AG216000 Rh1BG182100 Rh1CG200300 Rh1DG212000
rosa_wichuraiana	Rw1G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	355
AciI	CCGC	4 cut(s)	388, 864, 870, 1175
AclWI	GGATC	2 cut(s)	281, 375
AcsI	RAATTY	1 cut(s)	1190
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	2 cut(s)	135, 782
AfeI	AGCGCT	1 cut(s)	1008
AflIII	ACRYGT	1 cut(s)	1030
AgeI	ACCGGT	1 cut(s)	562
AgsI	TTSAA	7 cut(s)	422, 502, 573, 695, 701, 755, 811
AjnI	CCWGG	1 cut(s)	626
Alw26I	GTCTC	4 cut(s)	78, 341, 370, 617
AlwI	GGATC	2 cut(s)	281, 375
Aor51HI	AGCGCT	1 cut(s)	1008
ApeKI	GCWGC	2 cut(s)	872, 1046
ApoI	RAATTY	1 cut(s)	1190
AsiGI	ACCGGT	1 cut(s)	562
Asp700I	GAANNNNTTC	1 cut(s)	946
AspLEI	GCGC	2 cut(s)	130, 1009
AsuHPI	GGTGA	4 cut(s)	479, 577, 1055, 1115
BanII	GRGCYC	1 cut(s)	558
BbsI	GAAGAC	2 cut(s)	799, 982
BbvI	GCAGC	2 cut(s)	859, 1058
BccI	CCATC	3 cut(s)	468, 1074, 1084
BcgI	CGANNNNNNTGC	2 cut(s)	1154, 1188
BciT130I	CCWGG	1 cut(s)	628
BclI	TGATCA	3 cut(s)	139, 412, 744
BcoDI	GTCTC	4 cut(s)	78, 341, 370, 617
BfmI	CTRYAG	1 cut(s)	1044
BfoI	RGCGCY	1 cut(s)	1010
BglII	AGATCT	2 cut(s)	707, 1117
BisI	GCNGC	3 cut(s)	864, 873, 1047
BlsI	GCNGC	3 cut(s)	865, 874, 1048
Bme1390I	CCNGG	1 cut(s)	628
BmrFI	CCNGG	1 cut(s)	628
BmsI	GCATC	3 cut(s)	115, 571, 1174
BpiI	GAAGAC	2 cut(s)	799, 982
BsaBI	GATNNNNATC	1 cut(s)	1122
BsaI	GGTCTC	2 cut(s)	78, 341
BsaJI	CCNNGG	2 cut(s)	627, 732
BsaWI	WCCGGW	1 cut(s)	562
Bse118I	RCCGGY	1 cut(s)	562
Bse1I	ACTGG	2 cut(s)	131, 1042
Bse8I	GATNNNNATC	1 cut(s)	1122
BseBI	CCWGG	1 cut(s)	628
BseDI	CCNNGG	2 cut(s)	627, 732
BseGI	GGATG	2 cut(s)	466, 694
BseJI	GATNNNNATC	1 cut(s)	1122
BseMII	CTCAG	2 cut(s)	180, 282
BseNI	ACTGG	2 cut(s)	131, 1042
BseRI	GAGGAG	4 cut(s)	46, 131, 283, 749
BseXI	GCAGC	2 cut(s)	859, 1058
BshTI	ACCGGT	1 cut(s)	562
BsiSI	CCGG	1 cut(s)	563
BslFI	GGGAC	2 cut(s)	644, 846
BsmAI	GTCTC	4 cut(s)	78, 341, 370, 617
BsmBI	CGTCTC	1 cut(s)	370
BsmFI	GGGAC	2 cut(s)	644, 846
BsmI	GAATGC	3 cut(s)	273, 497, 974
Bso31I	GGTCTC	2 cut(s)	78, 341
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp143I	GATC	9 cut(s)	139, 286, 380, 412, 430, 707, 744, 1025, 1117
BspACI	CCGC	4 cut(s)	388, 864, 870, 1175
BspCNI	CTCAG	2 cut(s)	179, 283
BspHI	TCATGA	1 cut(s)	615
BspMAI	CTGCAG	1 cut(s)	1048
BspPI	GGATC	2 cut(s)	281, 375
BspTNI	GGTCTC	2 cut(s)	78, 341
BsrFI	RCCGGY	1 cut(s)	562
BsrI	ACTGG	2 cut(s)	131, 1042
BssAI	RCCGGY	1 cut(s)	562
BssECI	CCNNGG	2 cut(s)	627, 732
BssMI	GATC	9 cut(s)	139, 286, 380, 412, 430, 707, 744, 1025, 1117
Bst2UI	CCWGG	1 cut(s)	628
Bst6I	CTCTTC	3 cut(s)	207, 213, 260
BstC8I	GCNNGC	1 cut(s)	1005
BstDEI	CTNAG	3 cut(s)	166, 251, 291
BstF5I	GGATG	2 cut(s)	466, 694
BstH2I	RGCGCY	1 cut(s)	1010
BstHHI	GCGC	2 cut(s)	130, 1009
BstKTI	GATC	9 cut(s)	142, 289, 383, 415, 433, 710, 747, 1028, 1120
BstMAI	GTCTC	4 cut(s)	78, 341, 370, 617
BstMBI	GATC	9 cut(s)	139, 286, 380, 412, 430, 707, 744, 1025, 1117
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 795, 869, 872
BstNI	CCWGG	1 cut(s)	628
BstNSI	RCATGY	1 cut(s)	1034
BstSCI	CCNGG	1 cut(s)	626
BstSFI	CTRYAG	1 cut(s)	1044
BstV1I	GCAGC	2 cut(s)	859, 1058
BstV2I	GAAGAC	2 cut(s)	799, 982
BstX2I	RGATCY	3 cut(s)	286, 707, 1117
BstXI	CCANNNNNNTGG	1 cut(s)	827
BstYI	RGATCY	3 cut(s)	286, 707, 1117
BtsCI	GGATG	2 cut(s)	466, 694
Cac8I	GCNNGC	1 cut(s)	1005
CciI	TCATGA	1 cut(s)	615
CfoI	GCGC	2 cut(s)	130, 1009
Cfr10I	RCCGGY	1 cut(s)	562
Csp6I	GTAC	2 cut(s)	134, 781
CspAI	ACCGGT	1 cut(s)	562
CviAII	CATG	9 cut(s)	28, 67, 79, 137, 206, 406, 616, 965, 1031
CviQI	GTAC	2 cut(s)	134, 781
DdeI	CTNAG	3 cut(s)	166, 251, 291
DpnI	GATC	9 cut(s)	141, 288, 382, 414, 432, 709, 746, 1027, 1119
DpnII	GATC	9 cut(s)	139, 286, 380, 412, 430, 707, 744, 1025, 1117
DrdI	GACNNNNNNGTC	1 cut(s)	355
DseDI	GACNNNNNNGTC	1 cut(s)	355
Eam1104I	CTCTTC	3 cut(s)	207, 213, 260
EarI	CTCTTC	3 cut(s)	207, 213, 260
Eco24I	GRGCYC	1 cut(s)	558
Eco31I	GGTCTC	2 cut(s)	78, 341
Eco47III	AGCGCT	1 cut(s)	1008
Eco57I	CTGAAG	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	626
EcoT38I	GRGCYC	1 cut(s)	558
Esp3I	CGTCTC	1 cut(s)	370
FaeI	CATG	9 cut(s)	31, 70, 82, 140, 209, 409, 619, 968, 1034
FalI	AAGNNNNNCTT	2 cut(s)	934, 966
FaqI	GGGAC	2 cut(s)	644, 846
FatI	CATG	9 cut(s)	27, 66, 78, 136, 205, 405, 615, 964, 1030
FbaI	TGATCA	3 cut(s)	139, 412, 744
Fnu4HI	GCNGC	3 cut(s)	864, 873, 1047
FokI	GGATG	2 cut(s)	453, 701
FriOI	GRGCYC	1 cut(s)	558
Fsp4HI	GCNGC	3 cut(s)	864, 873, 1047
GlaI	GCGC	2 cut(s)	129, 1008
GluI	GCNGC	3 cut(s)	864, 873, 1047
HaeII	RGCGCY	1 cut(s)	1010
HapII	CCGG	1 cut(s)	563
HhaI	GCGC	2 cut(s)	130, 1009
Hin1II	CATG	9 cut(s)	31, 70, 82, 140, 209, 409, 619, 968, 1034
Hin6I	GCGC	2 cut(s)	128, 1007
HinP1I	GCGC	2 cut(s)	128, 1007
HindIII	AAGCTT	4 cut(s)	20, 473, 1087, 1097
HpaII	CCGG	1 cut(s)	563
HphI	GGTGA	4 cut(s)	479, 577, 1055, 1115
Hpy166II	GTNNAC	3 cut(s)	901, 1016, 1198
Hpy188III	TCNNGA	5 cut(s)	290, 332, 428, 616, 680
Hpy8I	GTNNAC	3 cut(s)	901, 1016, 1198
HpyAV	CCTTC	3 cut(s)	98, 194, 227
HpyCH4V	TGCA	4 cut(s)	27, 798, 938, 1046
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 795, 869, 872
HpyF3I	CTNAG	3 cut(s)	166, 251, 291
Hsp92II	CATG	9 cut(s)	31, 70, 82, 140, 209, 409, 619, 968, 1034
HspAI	GCGC	2 cut(s)	128, 1007
Ksp22I	TGATCA	3 cut(s)	139, 412, 744
Kzo9I	GATC	9 cut(s)	139, 286, 380, 412, 430, 707, 744, 1025, 1117
LmnI	GCTCC	4 cut(s)	33, 270, 736, 1138
Lsp1109I	GCAGC	2 cut(s)	859, 1058
LweI	GCATC	3 cut(s)	115, 571, 1174
MaeIII	GTNAC	5 cut(s)	62, 722, 845, 1033, 1103
MalI	GATC	9 cut(s)	141, 288, 382, 414, 432, 709, 746, 1027, 1119
MboI	GATC	9 cut(s)	139, 286, 380, 412, 430, 707, 744, 1025, 1117
MflI	RGATCY	3 cut(s)	286, 707, 1117
MhlI	GDGCHC	1 cut(s)	558
MluCI	AATT	5 cut(s)	507, 573, 924, 1190, 1203
MlyI	GAGTC	5 cut(s)	158, 320, 362, 385, 996
MroXI	GAANNNNTTC	1 cut(s)	946
MseI	TTAA	6 cut(s)	477, 510, 858, 927, 1053, 1122
MspA1I	CMGCKG	1 cut(s)	872
MspI	CCGG	1 cut(s)	563
MspR9I	CCNGG	1 cut(s)	628
Mva1269I	GAATGC	3 cut(s)	273, 497, 974
MvaI	CCWGG	1 cut(s)	628
MwoI	GCNNNNNNNGC	4 cut(s)	33, 795, 869, 872
NdeII	GATC	9 cut(s)	139, 286, 380, 412, 430, 707, 744, 1025, 1117
NlaIII	CATG	9 cut(s)	31, 70, 82, 140, 209, 409, 619, 968, 1034
NmuCI	GTSAC	5 cut(s)	62, 722, 845, 1033, 1103
NspI	RCATGY	1 cut(s)	1034
PagI	TCATGA	1 cut(s)	615
PciI	ACATGT	1 cut(s)	1030
PcsI	WCGNNNNNNNCGW	1 cut(s)	723
PctI	GAATGC	3 cut(s)	273, 497, 974
PdmI	GAANNNNTTC	1 cut(s)	946
PfeI	GAWTC	6 cut(s)	94, 103, 259, 530, 728, 889
PflFI	GACNNNGTC	1 cut(s)	352
PinAI	ACCGGT	1 cut(s)	562
PkrI	GCNGC	3 cut(s)	865, 874, 1048
PleI	GAGTC	5 cut(s)	158, 319, 361, 385, 995
PpsI	GAGTC	5 cut(s)	158, 319, 361, 385, 995
PscI	ACATGT	1 cut(s)	1030
Psp6I	CCWGG	1 cut(s)	626
PspGI	CCWGG	1 cut(s)	626
PstI	CTGCAG	1 cut(s)	1048
PsuI	RGATCY	3 cut(s)	286, 707, 1117
PsyI	GACNNNGTC	1 cut(s)	352
RsaI	GTAC	2 cut(s)	135, 782
RsaNI	GTAC	2 cut(s)	134, 781
SaqAI	TTAA	6 cut(s)	477, 510, 858, 927, 1053, 1122
SatI	GCNGC	3 cut(s)	864, 873, 1047
Sau3AI	GATC	9 cut(s)	139, 286, 380, 412, 430, 707, 744, 1025, 1117
SchI	GAGTC	5 cut(s)	158, 320, 362, 385, 996
ScrFI	CCNGG	1 cut(s)	628
SduI	GDGCHC	1 cut(s)	558
SfaNI	GCATC	3 cut(s)	115, 571, 1174
SfcI	CTRYAG	1 cut(s)	1044
Sse9I	AATT	5 cut(s)	507, 573, 924, 1190, 1203
SsiI	CCGC	4 cut(s)	388, 864, 870, 1175
StyD4I	CCNGG	1 cut(s)	626
TaqI	TCGA	1 cut(s)	1164
TaqII	GACCGA	1 cut(s)	365
TasI	AATT	5 cut(s)	507, 573, 924, 1190, 1203
TatI	WGTACW	2 cut(s)	133, 780
TauI	GCSGC	1 cut(s)	866
TfiI	GAWTC	6 cut(s)	94, 103, 259, 530, 728, 889
Tru1I	TTAA	6 cut(s)	477, 510, 858, 927, 1053, 1122
Tru9I	TTAA	6 cut(s)	477, 510, 858, 927, 1053, 1122
TseFI	GTSAC	5 cut(s)	62, 722, 845, 1033, 1103
TseI	GCWGC	2 cut(s)	872, 1046
Tsp45I	GTSAC	5 cut(s)	62, 722, 845, 1033, 1103
TspDTI	ATGAA	7 cut(s)	86, 98, 171, 210, 434, 981, 1097
Tth111I	GACNNNGTC	1 cut(s)	352
XapI	RAATTY	1 cut(s)	1190
XceI	RCATGY	1 cut(s)	1034
XmnI	GAANNNNTTC	1 cut(s)	946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.