Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008314

Physical Location & Seq

Genomic Coordinates Forward (+)

23732869 .. 23734023

Gene Structure 1155 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1214100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGAGAAGCGGTGTAAGATTTGCATGAGGAGCTTCCCCAATGGCAGAGCCTTGGGGGGTCACATGAGGTCTCACGTCATGAACCATCCGATTCCTCAGAAACCGGAAGATGAAGACGAAGAAGCGAATCGAGAACAAACCCAGCTGACCATTGATGAGCTGTGCGATTCAGCTTCAGCTTCTTCTCCGTTGTCTTCAGACGATGAAGAAGAACATGATGATGATATGATTTATGGTTTGAGTGAGAATCCAAAGAGAAGCATAAAGCTAGTGGATCCTGAGTTTTCTTTTGTCATCCATGCTGGGTCTATTGTTCTTCAAGACAAAGAGAGTGAGACCGAGTCGTCCAAGAGCCCAACTCGGAGACGATCTAAAAGAACACGAAAATCCTCCATGATGGCGCTTCATCATCATCAAAATCATAGTCAGTATCACCATCATCAAAAGCTCGAATCTTTCAAGAAAATTAAGCTCAAGAACAAGGTGGTCAGCAGCAAGGCCGATTCTTTCGATCCGGAACCCGTAAGTTCAATTTCCGATGCCACCAAAGAGGAAGATGTCGCCTTCTGCCTCATGATGTTGTCGAGAGACAAATGGAAAAAACAAGACCGCCACCACCAACATGAACAAGAACAAGAAAAAGACGATGAAGTGGAAAGATCAACGGAGGACACGGATGATTCTGAGGAGCATCTGATCAACTTACCCAGAACTAGAACTGCTCGAGGGAAATACAAATGTGAAACGTGCAACAAAGTTCTTAAATCTTATCAGGCTCTTGGTGGTCACAGAGCAAGCCACAAGAAGATTATCGCTTTGAATGCGAACCCCATTTACAAGCCCGAATTGAAGCAAGAAAATTATAATGTGGCAGGAAATTCTTCCTCTGTGGCTGAACGAAAAATTCATGAATGCCCAGTTTGTTTTAGAGTTTTTTCCTCTGGTCAAGCGCTTGGTGGGCACAAAAGATCTCATGTGATGAGTGGTTCTGCAGCAGAAGCAAGCAATAGTAGTCCTCCATTGAAGAGTTTAACTAAGCTTGGTGATAATTTGATAGATCTTAATCTTCCTGCTCCTTTTGACGATGATGACGTCGGCCAAATCGAGCTCTCTGCAGTTTCTGATTCAGAGTTTGTGAACCACATTAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

385

Amino Acids

43.47

Weight (kDa)

6.27

Isoelectric Point (pI)

63.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	4 - 25	9.6e-06	C2H2-type zinc finger
zf-C2H2_6	PF13912	245 - 269	1.6e-10	C2H2-type zinc finger
zf-C2H2_6	PF13912	303 - 325	7.9e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45120 AT3G60580
fragaria_vesca	FvH4_7g10990
malus_domestica	MD01G1182000.v1.1 MD02G1214100.v1.1 MD07G1114000.v1.1 MD07G1252200.v1.1
prunus_persica	Prupe.2G136700_v2.0.a1 Prupe.2G275700_v2.0.a1
pyrus_communis	pycom01g19180 pycom07g09900 pycom07g22460 pycom12659g00040
rosa_chinensis	RchiOBHm_Chr1g0348921
rosa_laevigata	RLG00000028616
rosa_multiflora	Rmu_sc0000106.1_g000004
rosa_roxburghii	Rroxscaffold_4G00306520
rosa_rugosa	Rorug01G0198500.1
rosa_samantha	Rh1AG216000 Rh1BG182100 Rh1CG200300 Rh1DG212000
rosa_wichuraiana	Rw1G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	864
AasI	GACNNNNNNGTC	1 cut(s)	343
AatII	GACGTC	1 cut(s)	1095
AccIII	TCCGGA	1 cut(s)	514
AciI	CCGC	2 cut(s)	10, 610
AclWI	GGATC	3 cut(s)	269, 282, 506
AcoI	YGGCCR	1 cut(s)	1096
AcsI	RAATTY	2 cut(s)	877, 903
AcuI	CTGAAG	2 cut(s)	159, 180
AcyI	GRCGYC	1 cut(s)	1092
AfeI	AGCGCT	1 cut(s)	951
AgsI	TTSAA	6 cut(s)	320, 460, 531, 820, 850, 1024
AjiI	CACGTC	1 cut(s)	76
Alw21I	GWGCWC	1 cut(s)	1110
Alw26I	GTCTC	4 cut(s)	75, 329, 358, 582
AlwI	GGATC	3 cut(s)	269, 282, 506
AlwNI	CAGNNNCTG	1 cut(s)	1121
Ama87I	CYCGRG	1 cut(s)	723
Aor13HI	TCCGGA	1 cut(s)	514
Aor51HI	AGCGCT	1 cut(s)	951
AoxI	GGCC	2 cut(s)	498, 1096
ApeKI	GCWGC	2 cut(s)	492, 992
ApoI	RAATTY	2 cut(s)	877, 903
ArsI	GACNNNNNNTTYG	2 cut(s)	409, 441
Asp700I	GAANNNNTTC	1 cut(s)	880
AspLEI	GCGC	2 cut(s)	403, 952
AsuHPI	GGTGA	2 cut(s)	425, 1055
AvaI	CYCGRG	1 cut(s)	723
BaeGI	GKGCMC	1 cut(s)	963
BamHI	GGATCC	1 cut(s)	274
BanII	GRGCYC	2 cut(s)	356, 1110
BbsI	GAAGAC	2 cut(s)	120, 186
Bbv12I	GWGCWC	1 cut(s)	1110
BbvI	GCAGC	2 cut(s)	504, 1004
BccI	CCATC	3 cut(s)	93, 391, 444
BcgI	CGANNNNNNTGC	2 cut(s)	1094, 1128
BclI	TGATCA	1 cut(s)	696
BcoDI	GTCTC	4 cut(s)	75, 329, 358, 582
BfaI	CTAG	2 cut(s)	269, 714
BfmI	CTRYAG	2 cut(s)	990, 1113
BfoI	RGCGCY	2 cut(s)	404, 953
BglII	AGATCT	2 cut(s)	968, 1057
BisI	GCNGC	2 cut(s)	493, 993
BlsI	GCNGC	2 cut(s)	494, 994
BmeT110I	CYCGRG	1 cut(s)	723
BmgBI	CACGTC	1 cut(s)	76
BmiI	GGNNCC	2 cut(s)	276, 519
BmrI	ACTGGG	1 cut(s)	911
BmsI	GCATC	2 cut(s)	529, 700
BmuI	ACTGGG	1 cut(s)	911
BpiI	GAAGAC	2 cut(s)	120, 186
BplI	GAGNNNNNCTC	2 cut(s)	343, 375
BpuEI	CTTGAG	1 cut(s)	458
BsaBI	GATNNNNATC	1 cut(s)	1062
BsaHI	GRCGYC	1 cut(s)	1092
BsaI	GGTCTC	2 cut(s)	75, 329
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	2 cut(s)	103, 514
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	917
Bse8I	GATNNNNATC	1 cut(s)	1062
BseAI	TCCGGA	1 cut(s)	514
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	3 cut(s)	85, 294, 682
BseJI	GATNNNNATC	1 cut(s)	1062
BseMII	CTCAG	3 cut(s)	110, 270, 675
BseNI	ACTGG	1 cut(s)	917
BseRI	GAGGAG	2 cut(s)	43, 701
BseSI	GKGCMC	1 cut(s)	963
BseXI	GCAGC	2 cut(s)	504, 1004
BseYI	CCCAGC	2 cut(s)	141, 302
BshFI	GGCC	2 cut(s)	500, 1098
BsiHKAI	GWGCWC	1 cut(s)	1110
BsiHKCI	CYCGRG	1 cut(s)	723
BsiSI	CCGG	2 cut(s)	104, 515
BsmAI	GTCTC	4 cut(s)	75, 329, 358, 582
BsmBI	CGTCTC	1 cut(s)	358
BsmI	GAATGC	2 cut(s)	826, 917
BsnI	GGCC	2 cut(s)	500, 1098
Bso31I	GGTCTC	2 cut(s)	75, 329
BsoBI	CYCGRG	1 cut(s)	723
Bsp1286I	GDGCHC	3 cut(s)	356, 963, 1110
Bsp13I	TCCGGA	1 cut(s)	514
Bsp143I	GATC	7 cut(s)	274, 368, 511, 659, 696, 968, 1057
BspACI	CCGC	2 cut(s)	10, 610
BspANI	GGCC	2 cut(s)	500, 1098
BspCNI	CTCAG	3 cut(s)	109, 271, 676
BspEI	TCCGGA	1 cut(s)	514
BspHI	TCATGA	3 cut(s)	78, 573, 907
BspLI	GGNNCC	2 cut(s)	276, 519
BspMAI	CTGCAG	2 cut(s)	994, 1117
BspPI	GGATC	3 cut(s)	269, 282, 506
BspTNI	GGTCTC	2 cut(s)	75, 329
BsrI	ACTGG	1 cut(s)	917
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	7 cut(s)	274, 368, 511, 659, 696, 968, 1057
BssNI	GRCGYC	1 cut(s)	1092
BssT1I	CCWWGG	1 cut(s)	51
Bst6I	CTCTTC	1 cut(s)	1019
BstACI	GRCGYC	1 cut(s)	1092
BstC8I	GCNNGC	2 cut(s)	796, 1003
BstDEI	CTNAG	4 cut(s)	96, 279, 684, 1035
BstF5I	GGATG	3 cut(s)	85, 294, 682
BstH2I	RGCGCY	2 cut(s)	404, 953
BstHHI	GCGC	2 cut(s)	403, 952
BstKTI	GATC	7 cut(s)	277, 371, 514, 662, 699, 971, 1060
BstMAI	GTCTC	4 cut(s)	75, 329, 358, 582
BstMBI	GATC	7 cut(s)	274, 368, 511, 659, 696, 968, 1057
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 821, 958, 998
BstSFI	CTRYAG	2 cut(s)	990, 1113
BstSLI	GKGCMC	1 cut(s)	963
BstV1I	GCAGC	2 cut(s)	504, 1004
BstV2I	GAAGAC	2 cut(s)	120, 186
BstX2I	RGATCY	3 cut(s)	274, 968, 1057
BstYI	RGATCY	3 cut(s)	274, 968, 1057
BsuRI	GGCC	2 cut(s)	500, 1098
BtrI	CACGTC	1 cut(s)	76
BtsCI	GGATG	3 cut(s)	85, 294, 682
Cac8I	GCNNGC	2 cut(s)	796, 1003
CaiI	CAGNNNCTG	1 cut(s)	1121
CciI	TCATGA	3 cut(s)	78, 573, 907
CfoI	GCGC	2 cut(s)	403, 952
DdeI	CTNAG	4 cut(s)	96, 279, 684, 1035
DpnI	GATC	7 cut(s)	276, 370, 513, 661, 698, 970, 1059
DpnII	GATC	7 cut(s)	274, 368, 511, 659, 696, 968, 1057
DrdI	GACNNNNNNGTC	1 cut(s)	343
DseDI	GACNNNNNNGTC	1 cut(s)	343
EaeI	YGGCCR	1 cut(s)	1096
Eam1104I	CTCTTC	1 cut(s)	1019
EarI	CTCTTC	1 cut(s)	1019
Ecl136II	GAGCTC	1 cut(s)	1108
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	2 cut(s)	356, 1110
Eco31I	GGTCTC	2 cut(s)	75, 329
Eco47III	AGCGCT	1 cut(s)	951
Eco53kI	GAGCTC	1 cut(s)	1108
Eco57I	CTGAAG	2 cut(s)	159, 180
Eco88I	CYCGRG	1 cut(s)	723
EcoICRI	GAGCTC	1 cut(s)	1108
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	2 cut(s)	356, 1110
ErhI	CCWWGG	1 cut(s)	51
Esp3I	CGTCTC	1 cut(s)	358
FbaI	TGATCA	1 cut(s)	696
Fnu4HI	GCNGC	2 cut(s)	493, 993
FokI	GGATG	3 cut(s)	72, 281, 689
FriOI	GRGCYC	2 cut(s)	356, 1110
Fsp4HI	GCNGC	2 cut(s)	493, 993
FspBI	CTAG	2 cut(s)	269, 714
GlaI	GCGC	2 cut(s)	402, 951
GluI	GCNGC	2 cut(s)	493, 993
GsaI	CCCAGC	2 cut(s)	145, 306
HaeII	RGCGCY	2 cut(s)	404, 953
HaeIII	GGCC	2 cut(s)	500, 1098
HapII	CCGG	2 cut(s)	104, 515
HhaI	GCGC	2 cut(s)	403, 952
Hin1I	GRCGYC	1 cut(s)	1092
Hin6I	GCGC	2 cut(s)	401, 950
HinP1I	GCGC	2 cut(s)	401, 950
HindIII	AAGCTT	1 cut(s)	1037
HinfI	GANTC	9 cut(s)	91, 127, 167, 247, 341, 452, 503, 680, 1124
HpaII	CCGG	2 cut(s)	104, 515
HphI	GGTGA	2 cut(s)	425, 1055
Hpy166II	GTNNAC	1 cut(s)	1138
Hpy188I	TCNGA	9 cut(s)	90, 99, 199, 363, 538, 685, 696, 1123, 1129
Hpy8I	GTNNAC	1 cut(s)	1138
Hpy99I	CGWCG	1 cut(s)	1097
HpyAV	CCTTC	1 cut(s)	574
HpyCH4IV	ACGT	3 cut(s)	75, 746, 1092
HpyCH4V	TGCA	4 cut(s)	24, 750, 992, 1115
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 821, 958, 998
HpyF3I	CTNAG	4 cut(s)	96, 279, 684, 1035
HpySE526I	ACGT	3 cut(s)	75, 746, 1092
Hsp92I	GRCGYC	1 cut(s)	1092
HspAI	GCGC	2 cut(s)	401, 950
Kpn2I	TCCGGA	1 cut(s)	514
Ksp22I	TGATCA	1 cut(s)	696
Kzo9I	GATC	7 cut(s)	274, 368, 511, 659, 696, 968, 1057
LmnI	GCTCC	3 cut(s)	30, 688, 1078
Lsp1109I	GCAGC	2 cut(s)	504, 1004
LweI	GCATC	2 cut(s)	529, 700
MaeI	CTAG	2 cut(s)	269, 714
MaeII	ACGT	3 cut(s)	75, 746, 1092
MaeIII	GTNAC	2 cut(s)	59, 785
MalI	GATC	7 cut(s)	276, 370, 513, 661, 698, 970, 1059
MboI	GATC	7 cut(s)	274, 368, 511, 659, 696, 968, 1057
MflI	RGATCY	3 cut(s)	274, 968, 1057
MhlI	GDGCHC	3 cut(s)	356, 963, 1110
MluCI	AATT	7 cut(s)	465, 531, 845, 859, 877, 903, 1048
MlyI	GAGTC	1 cut(s)	350
MroI	TCCGGA	1 cut(s)	514
MroXI	GAANNNNTTC	1 cut(s)	880
MseI	TTAA	4 cut(s)	468, 762, 1031, 1062
MslI	CAYNNNNRTG	2 cut(s)	219, 621
MspA1I	CMGCKG	1 cut(s)	145
MspI	CCGG	2 cut(s)	104, 515
Mva1269I	GAATGC	2 cut(s)	826, 917
MwoI	GCNNNNNNNGC	4 cut(s)	30, 821, 958, 998
NdeII	GATC	7 cut(s)	274, 368, 511, 659, 696, 968, 1057
NlaIV	GGNNCC	2 cut(s)	276, 519
NmuCI	GTSAC	2 cut(s)	59, 785
PaeR7I	CTCGAG	1 cut(s)	723
PagI	TCATGA	3 cut(s)	78, 573, 907
PcsI	WCGNNNNNNNCGW	2 cut(s)	1089, 1101
PctI	GAATGC	2 cut(s)	826, 917
PdmI	GAANNNNTTC	1 cut(s)	880
PfeI	GAWTC	8 cut(s)	91, 127, 167, 247, 452, 503, 680, 1124
PflFI	GACNNNGTC	1 cut(s)	340
PkrI	GCNGC	2 cut(s)	494, 994
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PsiI	TTATAA	1 cut(s)	864
Psp124BI	GAGCTC	1 cut(s)	1110
PspFI	CCCAGC	2 cut(s)	141, 302
PspN4I	GGNNCC	2 cut(s)	276, 519
PspXI	VCTCGAGB	1 cut(s)	723
PsrI	GAACNNNNNNTAC	2 cut(s)	818, 850
PstI	CTGCAG	2 cut(s)	994, 1117
PstNI	CAGNNNCTG	1 cut(s)	1121
PsuI	RGATCY	3 cut(s)	274, 968, 1057
PsyI	GACNNNGTC	1 cut(s)	340
PvuII	CAGCTG	1 cut(s)	145
RseI	CAYNNNNRTG	2 cut(s)	219, 621
SacI	GAGCTC	1 cut(s)	1110
SaqAI	TTAA	4 cut(s)	468, 762, 1031, 1062
SatI	GCNGC	2 cut(s)	493, 993
Sau3AI	GATC	7 cut(s)	274, 368, 511, 659, 696, 968, 1057
SchI	GAGTC	1 cut(s)	350
SduI	GDGCHC	3 cut(s)	356, 963, 1110
SfaNI	GCATC	2 cut(s)	529, 700
SfcI	CTRYAG	2 cut(s)	990, 1113
Sfr274I	CTCGAG	1 cut(s)	723
SlaI	CTCGAG	1 cut(s)	723
SmiMI	CAYNNNNRTG	2 cut(s)	219, 621
SmlI	CTYRAG	2 cut(s)	473, 723
SmoI	CTYRAG	2 cut(s)	473, 723
Sse9I	AATT	7 cut(s)	465, 531, 845, 859, 877, 903, 1048
SsiI	CCGC	2 cut(s)	10, 610
SspMI	CTAG	2 cut(s)	269, 714
SstI	GAGCTC	1 cut(s)	1110
StyI	CCWWGG	1 cut(s)	51
TaiI	ACGT	3 cut(s)	78, 749, 1095
TaqI	TCGA	6 cut(s)	130, 450, 510, 584, 724, 1104
TaqII	GACCGA	1 cut(s)	353
TasI	AATT	7 cut(s)	465, 531, 845, 859, 877, 903, 1048
TfiI	GAWTC	8 cut(s)	91, 127, 167, 247, 452, 503, 680, 1124
Tru1I	TTAA	4 cut(s)	468, 762, 1031, 1062
Tru9I	TTAA	4 cut(s)	468, 762, 1031, 1062
TseFI	GTSAC	2 cut(s)	59, 785
TseI	GCWGC	2 cut(s)	492, 992
Tsp45I	GTSAC	2 cut(s)	59, 785
TspDTI	ATGAA	8 cut(s)	95, 126, 219, 395, 639, 663, 896, 924
TspGWI	ACGGA	3 cut(s)	177, 680, 689
Tth111I	GACNNNGTC	1 cut(s)	340
XapI	RAATTY	2 cut(s)	877, 903
XhoI	CTCGAG	1 cut(s)	723
XmnI	GAANNNNTTC	1 cut(s)	880
XspI	CTAG	2 cut(s)	269, 714
ZraI	GACGTC	1 cut(s)	1093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.