Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002079

Physical Location & Seq

Genomic Coordinates Forward (+)

19132925 .. 19135383

Gene Structure 2459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGATGAACGTTAAACCAATGGAGCAGATCATGATTCCTAATAACAACACACATCAACCAAACACCACATCCAATGCAAGGCCAAACACCATTCTCACATCTAACGGCGTCTCAACTGCTGGAGCAACCGTCTCCGGCGTAAGCAACAACAATAACAATACGGCGGTTGTGGCGGAGAGGAAAGCAAGACCACAAGAGAAACTAAATTGTCCAAGATGCAACTCAACCAACACAAAGTTTTGTTACTACAACAACTATAGTCTCACACAACCAAGATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGGATCTCTTAGGAATGTTCCTGTGGGAGGAAGCTCAAGAAAGAACAAGAGATCATCTTCATCTTCTTCATCAAACATCCTTCAGACAATACCATCTTCACTTCCAGATCTAAACCCGCCAATACTCTTCTCAAACCAAATCCATAATAAATCGAAAGGGTCATCACAAGATCTCAACTTGTTGTCTTTCCCAGTCATGCAAGATCAACATCATCATCATGTCCATATGTCTCAGTTTCTTCAGATGCCTAAGATGGAGGGAAATGGTAACATAACTCATCAGCAGCAGCCTTCATCATCTTCTTCTGTCTATGGTTCCTCGTCGTCTCCTGTTTCAGCTCTTGAACTTTTAAGAACCGGAGTTAATGTTTCTTCAAGATCAGGGATTAACTCATCGTTCATGCCTTCCGGTTCAATGATGGATTCAAACACTGTGCTTTACACTTCTTCAGGGTTTCCAACAATGGTGGATTACAAGCCAAGTAATCTCTCCTTCTCTACCGATCATCAAGGGCTTGGACACAATAGCAACAATAGGTCTGAAGCTCTTCATAGTGATCATCACCAACAAGGTAGAGTTTTGTTTCCATTTGGGGATCAAATGAAGGAGCTTTCATCAAGCATAACACAAGAAGTTGATCATGATGATAATCAACAACAGAAGAGTCATGGAAATAATAATAATAATAATAACTCAAGCCCTAATAATGGATATTGGAGTGGGATGTTCAGTACTACAGGAGGAGGATCTTCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009415 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010029 GO:0010030 GO:0010035 GO:0010114 GO:0010161 GO:0010371 GO:0010372 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0042221 GO:0043455 GO:0045828 GO:0045834 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0090351 GO:0104004 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

357

Amino Acids

39.11

Weight (kDa)

9.19

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	66 - 122	4.1e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46590 AT2G46590 AT3G61850 AT3G61850 AT3G61850 AT3G61850 AT3G61850
fragaria_vesca	FvH4_7g17000 FvH4_7g17000 FvH4_7g17000 FvH4_7g32170 FvH4_7g32170 FvH4_7g32170
malus_domestica	MD01G1084700.v1.1 MD01G1224500.v1.1 MD07G1153300.v1.1 MD07G1295200.v1.1
prunus_persica	Prupe.2G192300_v2.0.a1 Prupe.2G192300_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1
pyrus_communis	pycom01g23320 pycom07g26780
rosa_chinensis	RchiOBHm_Chr1g0360381 RchiOBHm_Chr1g0381791
rosa_laevigata	RLG00000026205 RLG00000027812
rosa_multiflora	Rmu_sc0008418.1_g000008 Rmu_ssc0000368.1_g000076
rosa_roxburghii	Rroxscaffold_4G00278450 Rroxscaffold_4G00296170
rosa_rugosa	Rorug01G0276400 Rorug01G0276500 Rorug01G0431000
rosa_samantha	Rh1AG290500 Rh1AG454400 Rh1BG255600 Rh1CG273300 Rh1CG426000 Rh1DG285400 Rh1DG443700
rosa_wichuraiana	Rw1G025720 Rw1G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	164, 173, 431
AclI	AACGTT	1 cut(s)	9
AclWI	GGATC	3 cut(s)	325, 918, 1069
AcuI	CTGAAG	4 cut(s)	380, 539, 747, 876
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	1048
AfiI	CCNNNNNNNGG	3 cut(s)	78, 341, 1022
AgsI	TTSAA	4 cut(s)	659, 690, 729, 741
AluBI	AGCT	4 cut(s)	348, 653, 860, 925
AluI	AGCT	4 cut(s)	348, 653, 860, 925
Alw26I	GTCTC	5 cut(s)	115, 136, 266, 549, 645
AlwI	GGATC	3 cut(s)	325, 918, 1069
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	2 cut(s)	598, 601
Asp700I	GAANNNNTTC	1 cut(s)	861
AspS9I	GGNCC	1 cut(s)	306
AsuHPI	GGTGA	1 cut(s)	869
AvaII	GGWCC	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	610, 613
BccI	CCATC	3 cut(s)	415, 562, 727
BceAI	ACGGC	2 cut(s)	121, 177
BclI	TGATCA	2 cut(s)	871, 952
BcoDI	GTCTC	5 cut(s)	115, 136, 266, 549, 645
BfmI	CTRYAG	2 cut(s)	256, 1050
BglII	AGATCT	2 cut(s)	421, 484
BisI	GCNGC	2 cut(s)	599, 602
BlsI	GCNGC	2 cut(s)	600, 603
BmcAI	AGTACT	1 cut(s)	1048
Bme18I	GGWCC	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	306
BmiI	GGNNCC	1 cut(s)	631
BmrI	ACTGGG	1 cut(s)	500
BmsI	GCATC	2 cut(s)	206, 549
BmuI	ACTGGG	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	141
BpuEI	CTTGAG	2 cut(s)	334, 994
BsaBI	GATNNNNATC	2 cut(s)	522, 963
BsaHI	GRCGYC	1 cut(s)	108
BsaWI	WCCGGW	2 cut(s)	671, 722
BsaXI	ACNNNNNCTCC	4 cut(s)	114, 144, 666, 696
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 341, 1022
Bse1I	ACTGG	1 cut(s)	506
Bse8I	GATNNNNATC	2 cut(s)	522, 963
BseGI	GGATG	3 cut(s)	68, 390, 1044
BseJI	GATNNNNATC	2 cut(s)	522, 963
BseLI	CCNNNNNNNGG	3 cut(s)	78, 341, 1022
BseMII	CTCAG	1 cut(s)	560
BseNI	ACTGG	1 cut(s)	506
BseRI	GAGGAG	1 cut(s)	1071
BseXI	GCAGC	2 cut(s)	610, 613
BshFI	GGCC	1 cut(s)	82
BsiSI	CCGG	3 cut(s)	135, 672, 723
BslI	CCNNNNNNNGG	3 cut(s)	78, 341, 1022
BsmAI	GTCTC	5 cut(s)	115, 136, 266, 549, 645
BsmBI	CGTCTC	3 cut(s)	115, 136, 645
BsnI	GGCC	1 cut(s)	82
BspACI	CCGC	3 cut(s)	164, 173, 431
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	1 cut(s)	559
BspHI	TCATGA	2 cut(s)	30, 955
BspLI	GGNNCC	1 cut(s)	631
BspPI	GGATC	3 cut(s)	325, 918, 1069
BspQI	GCTCTTC	1 cut(s)	867
BsrI	ACTGG	1 cut(s)	506
BssNI	GRCGYC	1 cut(s)	108
Bst4CI	ACNGT	2 cut(s)	130, 748
Bst6I	CTCTTC	3 cut(s)	446, 867, 971
BstACI	GRCGYC	1 cut(s)	108
BstDEI	CTNAG	3 cut(s)	323, 546, 564
BstENI	CCTNNNNNAGG	1 cut(s)	339
BstF5I	GGATG	3 cut(s)	68, 390, 1044
BstMAI	GTCTC	5 cut(s)	115, 136, 266, 549, 645
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstSFI	CTRYAG	2 cut(s)	256, 1050
BstV1I	GCAGC	2 cut(s)	610, 613
BstX2I	RGATCY	4 cut(s)	317, 421, 484, 1061
BstYI	RGATCY	4 cut(s)	317, 421, 484, 1061
BsuRI	GGCC	1 cut(s)	82
BtsCI	GGATG	3 cut(s)	68, 390, 1044
BtsIMutI	CAGTG	1 cut(s)	744
CciI	TCATGA	2 cut(s)	30, 955
Cfr13I	GGNCC	1 cut(s)	306
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	1047
CspCI	CAANNNNNGTGG	2 cut(s)	762, 797
CviAII	CATG	7 cut(s)	31, 511, 533, 715, 956, 983, 1068
CviJI	RGCY	9 cut(s)	82, 348, 604, 653, 793, 829, 860, 925, 1014
CviKI_1	RGCY	9 cut(s)	82, 348, 604, 653, 793, 829, 860, 925, 1014
CviQI	GTAC	1 cut(s)	1047
DdeI	CTNAG	3 cut(s)	323, 546, 564
Eam1104I	CTCTTC	3 cut(s)	446, 867, 971
EarI	CTCTTC	3 cut(s)	446, 867, 971
EciI	GGCGGA	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	306
Eco57I	CTGAAG	4 cut(s)	380, 539, 747, 876
EcoNI	CCTNNNNNAGG	1 cut(s)	339
Esp3I	CGTCTC	3 cut(s)	115, 136, 645
FaeI	CATG	7 cut(s)	34, 514, 536, 718, 959, 986, 1071
FatI	CATG	7 cut(s)	30, 510, 532, 714, 955, 982, 1067
FauI	CCCGC	1 cut(s)	438
FauNDI	CATATG	1 cut(s)	540
FbaI	TGATCA	2 cut(s)	871, 952
Fnu4HI	GCNGC	2 cut(s)	599, 602
FokI	GGATG	3 cut(s)	55, 377, 1051
Fsp4HI	GCNGC	2 cut(s)	599, 602
GluI	GCNGC	2 cut(s)	599, 602
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	3 cut(s)	135, 672, 723
HgaI	GACGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	7 cut(s)	34, 514, 536, 718, 959, 986, 1071
HinfI	GANTC	3 cut(s)	34, 737, 979
HpaII	CCGG	3 cut(s)	135, 672, 723
HphI	GGTGA	1 cut(s)	869
Hpy188I	TCNGA	3 cut(s)	399, 558, 856
Hpy188III	TCNNGA	6 cut(s)	31, 351, 419, 656, 690, 956
Hpy99I	CGWCG	1 cut(s)	640
HpyAV	CCTTC	7 cut(s)	291, 305, 404, 615, 729, 817, 913
HpyCH4III	ACNGT	2 cut(s)	130, 748
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	4 cut(s)	77, 219, 285, 514
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	3 cut(s)	323, 546, 564
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	7 cut(s)	34, 514, 536, 718, 959, 986, 1071
Ksp22I	TGATCA	2 cut(s)	871, 952
LguI	GCTCTTC	1 cut(s)	867
LmnI	GCTCC	3 cut(s)	22, 122, 922
Lsp1109I	GCAGC	2 cut(s)	610, 613
LweI	GCATC	2 cut(s)	206, 549
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	242, 581
MflI	RGATCY	4 cut(s)	317, 421, 484, 1061
MluCI	AATT	1 cut(s)	205
MlyI	GAGTC	1 cut(s)	988
MmeI	TCCRAC	1 cut(s)	797
MnlI	CCTC	6 cut(s)	171, 335, 565, 643, 1049, 1052
MroXI	GAANNNNTTC	1 cut(s)	861
MseI	TTAA	4 cut(s)	12, 665, 678, 702
MslI	CAYNNNNRTG	1 cut(s)	531
MspI	CCGG	3 cut(s)	135, 672, 723
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeI	CATATG	1 cut(s)	540
NlaIII	CATG	7 cut(s)	34, 514, 536, 718, 959, 986, 1071
NlaIV	GGNNCC	1 cut(s)	631
PagI	TCATGA	2 cut(s)	30, 955
PciSI	GCTCTTC	1 cut(s)	867
PdmI	GAANNNNTTC	1 cut(s)	861
PfeI	GAWTC	2 cut(s)	34, 737
PkrI	GCNGC	2 cut(s)	600, 603
PleI	GAGTC	1 cut(s)	987
PpsI	GAGTC	1 cut(s)	987
Psp1406I	AACGTT	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	631
PspPI	GGNCC	1 cut(s)	306
PsuI	RGATCY	4 cut(s)	317, 421, 484, 1061
RsaI	GTAC	1 cut(s)	1048
RsaNI	GTAC	1 cut(s)	1047
RseI	CAYNNNNRTG	1 cut(s)	531
SapI	GCTCTTC	1 cut(s)	867
SaqAI	TTAA	4 cut(s)	12, 665, 678, 702
SatI	GCNGC	2 cut(s)	599, 602
Sau96I	GGNCC	1 cut(s)	306
ScaI	AGTACT	1 cut(s)	1048
SchI	GAGTC	1 cut(s)	988
SfaNI	GCATC	2 cut(s)	206, 549
SfcI	CTRYAG	2 cut(s)	256, 1050
SinI	GGWCC	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	2 cut(s)	349, 1009
SmoI	CTYRAG	2 cut(s)	349, 1009
Sse9I	AATT	1 cut(s)	205
SsiI	CCGC	3 cut(s)	164, 173, 431
TaaI	ACNGT	2 cut(s)	130, 748
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	2 cut(s)	295, 467
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	1 cut(s)	205
TatI	WGTACW	1 cut(s)	1046
TfiI	GAWTC	2 cut(s)	34, 737
Tru1I	TTAA	4 cut(s)	12, 665, 678, 702
Tru9I	TTAA	4 cut(s)	12, 665, 678, 702
TscAI	CASTG	1 cut(s)	751
TseI	GCWGC	2 cut(s)	598, 601
TspDTI	ATGAA	9 cut(s)	20, 363, 372, 597, 703, 854, 918, 932, 1056
TspRI	CASTG	1 cut(s)	751
VpaK11BI	GGWCC	1 cut(s)	306
XagI	CCTNNNNNAGG	1 cut(s)	339
XmnI	GAANNNNTTC	1 cut(s)	861
ZrmI	AGTACT	1 cut(s)	1048

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.