Rorug01G0276400

Dof zinc finger protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
38878182 .. 38880903
2722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0276400.1

Sequence Viewer

Length: 1290 bp
ATGACGTCGCCTCCCTGCTTGGAAACGCCGTCGTTTTGTCCTTCTTCTACAGACTCAGATTGGGGACACAAAGTCTCAGACAAGGTGCTGTCACTCTACAACTCGCTTCCTAAGAAAGGCAAGCCTCAGGGCCGCGAAGTCACCGTCTTGGCCGCCTTCCTCCTTTCCTCTCCTCTTCAAGAATTGGAAGTTGTAGCATTGGGAACCGGAACCAAATGCGTCGGCCGTTCACTCCTCAGCCCCCGCGGCGATATCGTCAACGATTCCCACGCCGAAGTCATCGCTCGCCGCGCTTTAATCAGGTTCTTCTATGCACAGATACAATGTCTTTCTGAAATCTATAGTAGGCAAAGAGATAACAATGGAAGCAAACAGTTGCGAAACGATGATGCGAAAAAGTTTATTTTTGAACTGGACCCAGATGGTGATGATGGACAAGGAAAATACACAATGAGGAAGGGTTGGAAATTGCACATGTATATATCGCAACTGCCGTGTGGGATTGCTTCGCCGAGTTCATTGTTGTCTCCCCTGAAAAATATCTCACCTAGCGGAGGGGGTTCATTACTGGAGGAGCTTAATGATTCCATAAGTAAGCCGGCCTTGTTAGAGAACAATGGTGACGCTTCACAACTAATTGGCACGGTTCAAAGAAAGCCTGGTCGTGGTGATACTACATTATCAGTTAGCTGCTCTGACAAGATAGCTCGTTGGAATGTCGTTGGAGTTCAAGGAGCTTTGCTTTCCTTCTTTCTTCAACCTGTATACCTTTCTTCCATTACTGTTGGACAATCCCCTATCAACTCCGAAAAGGTTCTTGTGGTTGATTGTCTGAAACAAGCTTTGCATGATCGTGTCCTACCATTATCAAGCGAGCTGACCAGTCCCTTTCAGCCACTACTCTGGGAAGCTCCAATGCCACCAAAGGAATTTCAACATTCTGAGACCGCTTTGACCACTATAACATGCGGGTATTCGATATGTTGGAATAAGTCTGGTTTGCATGAAGTCATTCTTGGAACCATAGGAAGAAAGCAAGGTGCTGCAAAAGGAGCACGCAGTCCGTCTACTGAATCCCCTATATGCAAAAAACAGCTTTTGGAGATTTTCTTGTCCCTAAGGAATGAATGCCCCACCAAAATCCATGTCAATGAGATGTCGTATCGAGAAATTAAGGAAAGGGCACATGAATACAATGCAATGTCAAAAGTTCTAAAAAGAAGACATACCTTTAGTAATTGGCTATTGAAGCCCCCAGATTTGGAGGCATTCTCTGCTATGGGAGAGTGA

Protein Analysis

429

Amino Acids

47.24

Weight (kDa)

8.65

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_deamin PF02137 66 - 418 3.4e-77 Adenosine-deaminase (editase) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccI GTMKAC 2 cut(s) 765, 1067
AccII CGCG 3 cut(s) 135, 246, 291
AciI CCGC 8 cut(s) 133, 153, 244, 246, 289, 552, 948, 969
AcoI YGGCCR 2 cut(s) 150, 223
AcsI RAATTY 1 cut(s) 929
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 4 cut(s) 116, 554, 665, 1261
AflIII ACRYGT 1 cut(s) 474
AgsI TTSAA 7 cut(s) 179, 410, 650, 731, 758, 935, 1249
AhdI GACNNNNNGTC 1 cut(s) 71
AjnI CCWGG 1 cut(s) 658
AjuI GAANNNNNNNTTGG 2 cut(s) 999, 1031
AluBI AGCT 8 cut(s) 577, 690, 707, 737, 842, 877, 911, 1096
AluI AGCT 8 cut(s) 577, 690, 707, 737, 842, 877, 911, 1096
Alw21I GWGCWC 1 cut(s) 1057
Alw26I GTCTC 3 cut(s) 79, 531, 938
AoxI GGCC 4 cut(s) 130, 150, 223, 600
ApeKI GCWGC 2 cut(s) 690, 1043
ApoI RAATTY 1 cut(s) 929
ArsI GACNNNNNNTTYG 4 cut(s) 129, 161, 1131, 1163
Asp700I GAANNNNTTC 2 cut(s) 813, 1011
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 2 cut(s) 130, 415
AsuHPI GGTGA 5 cut(s) 133, 437, 537, 632, 680
AvaII GGWCC 1 cut(s) 415
AxyI CCTNAGG 2 cut(s) 126, 1118
BaeGI GKGCMC 1 cut(s) 1186
BbsI GAAGAC 1 cut(s) 1228
Bbv12I GWGCWC 1 cut(s) 1057
BbvCI CCTCAGC 1 cut(s) 236
BbvI GCAGC 2 cut(s) 677, 1030
BccI CCATC 2 cut(s) 416, 425
BceAI ACGGC 3 cut(s) 13, 210, 478
BciT130I CCWGG 1 cut(s) 660
BcoDI GTCTC 3 cut(s) 79, 531, 938
BfaI CTAG 1 cut(s) 549
BfmI CTRYAG 2 cut(s) 48, 340
BglI GCCNNNNNGGC 1 cut(s) 246
BisI GCNGC 6 cut(s) 133, 153, 247, 289, 691, 1044
BlsI GCNGC 6 cut(s) 134, 154, 248, 290, 692, 1045
Bme1390I CCNGG 1 cut(s) 660
Bme18I GGWCC 1 cut(s) 415
BmeRI GACNNNNNGTC 1 cut(s) 71
BmgT120I GGNCC 2 cut(s) 130, 415
BmiI GGNNCC 4 cut(s) 205, 211, 417, 1021
BmrFI CCNGG 1 cut(s) 660
BmsI GCATC 1 cut(s) 379
BpiI GAAGAC 1 cut(s) 1228
BplI GAGNNNNNCTC 2 cut(s) 1256, 1288
BpmI CTGGAG 1 cut(s) 590
Bpu10I CCTNAGC 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 938
BsaJI CCNNGG 1 cut(s) 244
BsaWI WCCGGW 1 cut(s) 206
BsaXI ACNNNNNCTCC 1 cut(s) 25
Bsc4I CCNNNNNNNGG 4 cut(s) 116, 554, 665, 1261
Bse118I RCCGGY 1 cut(s) 598
Bse1I ACTGG 3 cut(s) 417, 573, 882
Bse21I CCTNAGG 2 cut(s) 126, 1118
Bse3DI GCAATG 1 cut(s) 1206
BseBI CCWGG 1 cut(s) 660
BseDI CCNNGG 1 cut(s) 244
BseLI CCNNNNNNNGG 4 cut(s) 116, 554, 665, 1261
BseMI GCAATG 1 cut(s) 1206
BseMII CTCAG 5 cut(s) 69, 90, 140, 250, 933
BseNI ACTGG 3 cut(s) 417, 573, 882
BseRI GAGGAG 3 cut(s) 162, 224, 587
BseSI GKGCMC 1 cut(s) 1186
BseX3I CGGCCG 1 cut(s) 223
BseXI GCAGC 2 cut(s) 677, 1030
Bsh1236I CGCG 3 cut(s) 135, 246, 291
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 4 cut(s) 132, 152, 225, 602
BsiEI CGRYCG 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 1057
BsiSI CCGG 2 cut(s) 207, 599
BslFI GGGAC 3 cut(s) 78, 870, 1099
BslI CCNNNNNNNGG 4 cut(s) 116, 554, 665, 1261
BsmAI GTCTC 3 cut(s) 79, 531, 938
BsmFI GGGAC 3 cut(s) 78, 870, 1099
BsmI GAATGC 2 cut(s) 1133, 1268
BsnI GGCC 4 cut(s) 132, 152, 225, 602
Bso31I GGTCTC 1 cut(s) 938
Bsp1286I GDGCHC 2 cut(s) 1057, 1186
Bsp143I GATC 1 cut(s) 850
BspACI CCGC 8 cut(s) 133, 153, 244, 246, 289, 552, 948, 969
BspANI GGCC 4 cut(s) 132, 152, 225, 602
BspCNI CTCAG 5 cut(s) 68, 89, 139, 249, 934
BspFNI CGCG 3 cut(s) 135, 246, 291
BspLI GGNNCC 4 cut(s) 205, 211, 417, 1021
BspTNI GGTCTC 1 cut(s) 938
BsrDI GCAATG 1 cut(s) 1206
BsrFI RCCGGY 1 cut(s) 598
BsrI ACTGG 3 cut(s) 417, 573, 882
BssAI RCCGGY 1 cut(s) 598
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 1 cut(s) 850
BssNAI GTATAC 1 cut(s) 766
BssNI GRCGYC 1 cut(s) 5
Bst1107I GTATAC 1 cut(s) 766
Bst2UI CCWGG 1 cut(s) 660
Bst4CI ACNGT 4 cut(s) 145, 375, 646, 784
Bst6I CTCTTC 1 cut(s) 180
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 1274
BstC8I GCNNGC 5 cut(s) 122, 286, 600, 875, 1057
BstDEI CTNAG 7 cut(s) 55, 76, 111, 126, 236, 942, 1118
BstDSI CCRYGG 1 cut(s) 244
BstENI CCTNNNNNAGG 2 cut(s) 114, 552
BstFNI CGCG 3 cut(s) 135, 246, 291
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 1 cut(s) 853
BstMAI GTCTC 3 cut(s) 79, 531, 938
BstMBI GATC 1 cut(s) 850
BstMCI CGRYCG 1 cut(s) 226
BstMWI GCNNNNNNNGC 5 cut(s) 246, 290, 1052, 1249, 1274
BstNI CCWGG 1 cut(s) 660
BstNSI RCATGY 2 cut(s) 478, 969
BstSCI CCNGG 1 cut(s) 658
BstSFI CTRYAG 2 cut(s) 48, 340
BstSLI GKGCMC 1 cut(s) 1186
BstUI CGCG 3 cut(s) 135, 246, 291
BstV1I GCAGC 2 cut(s) 677, 1030
BstV2I GAAGAC 1 cut(s) 1228
BstXI CCANNNNNNTGG 1 cut(s) 903
BstZ17I GTATAC 1 cut(s) 766
BstZI CGGCCG 1 cut(s) 223
Bsu36I CCTNAGG 2 cut(s) 126, 1118
BsuRI GGCC 4 cut(s) 132, 152, 225, 602
BtgI CCRYGG 1 cut(s) 244
BtgZI GCGATG 1 cut(s) 265
Cac8I GCNNGC 5 cut(s) 122, 286, 600, 875, 1057
CfoI GCGC 1 cut(s) 293
Cfr10I RCCGGY 1 cut(s) 598
Cfr13I GGNCC 2 cut(s) 130, 415
Cfr42I CCGCGG 1 cut(s) 247
CseI GACGC 2 cut(s) 208, 632
CviAII CATG 6 cut(s) 475, 848, 966, 1004, 1145, 1187
DdeI CTNAG 7 cut(s) 55, 76, 111, 126, 236, 942, 1118
DpnI GATC 1 cut(s) 852
DpnII GATC 1 cut(s) 850
DriI GACNNNNNGTC 1 cut(s) 71
EaeI YGGCCR 2 cut(s) 150, 223
EagI CGGCCG 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 180
Eam1105I GACNNNNNGTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 180
EclXI CGGCCG 1 cut(s) 223
Eco31I GGTCTC 1 cut(s) 938
Eco32I GATATC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 415
Eco52I CGGCCG 1 cut(s) 223
Eco81I CCTNAGG 2 cut(s) 126, 1118
EcoNI CCTNNNNNAGG 2 cut(s) 114, 552
EcoRII CCWGG 1 cut(s) 658
EcoRV GATATC 1 cut(s) 253
FaeI CATG 6 cut(s) 478, 851, 969, 1007, 1148, 1190
FalI AAGNNNNNCTT 4 cut(s) 587, 619, 999, 1031
FaqI GGGAC 3 cut(s) 78, 870, 1099
FatI CATG 6 cut(s) 474, 847, 965, 1003, 1144, 1186
FauI CCCGC 2 cut(s) 251, 962
FblI GTMKAC 2 cut(s) 765, 1067
Fnu4HI GCNGC 6 cut(s) 133, 153, 247, 289, 691, 1044
Fsp4HI GCNGC 6 cut(s) 133, 153, 247, 289, 691, 1044
FspBI CTAG 1 cut(s) 549
GlaI GCGC 1 cut(s) 292
GluI GCNGC 6 cut(s) 133, 153, 247, 289, 691, 1044
GsuI CTGGAG 1 cut(s) 590
HaeIII GGCC 4 cut(s) 132, 152, 225, 602
HapII CCGG 2 cut(s) 207, 599
HgaI GACGC 2 cut(s) 208, 632
HhaI GCGC 1 cut(s) 293
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 478, 851, 969, 1007, 1148, 1190
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 840
HinfI GANTC 4 cut(s) 53, 263, 584, 1073
HpaII CCGG 2 cut(s) 207, 599
HphI GGTGA 5 cut(s) 133, 437, 537, 632, 680
Hpy166II GTNNAC 4 cut(s) 230, 259, 766, 1068
Hpy188I TCNGA 7 cut(s) 58, 79, 334, 697, 808, 834, 943
Hpy188III TCNNGA 2 cut(s) 179, 1166
Hpy8I GTNNAC 4 cut(s) 230, 259, 766, 1068
Hpy99I CGWCG 3 cut(s) 10, 34, 224
HpyAV CCTTC 4 cut(s) 51, 166, 451, 757
HpyCH4III ACNGT 4 cut(s) 145, 375, 646, 784
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 7 cut(s) 314, 472, 847, 1003, 1046, 1086, 1199
HpyF10VI GCNNNNNNNGC 5 cut(s) 246, 290, 1052, 1249, 1274
HpyF3I CTNAG 7 cut(s) 55, 76, 111, 126, 236, 942, 1118
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 478, 851, 969, 1007, 1148, 1190
HspAI GCGC 1 cut(s) 291
KroI GCCGGC 1 cut(s) 598
KroNI GCCGGC 1 cut(s) 600
KspI CCGCGG 1 cut(s) 247
Kzo9I GATC 1 cut(s) 850
LmnI GCTCC 4 cut(s) 574, 734, 916, 1052
Lsp1109I GCAGC 2 cut(s) 677, 1030
LweI GCATC 1 cut(s) 379
MaeI CTAG 1 cut(s) 549
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 3 cut(s) 90, 139, 620
MalI GATC 1 cut(s) 852
MboI GATC 1 cut(s) 850
MboII GAAGA 7 cut(s) 36, 167, 298, 746, 765, 1041, 1233
MhlI GDGCHC 2 cut(s) 1057, 1186
MluCI AATT 6 cut(s) 182, 467, 636, 929, 1170, 1237
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 5 cut(s) 443, 692, 703, 766, 965
MroNI GCCGGC 1 cut(s) 598
MroXI GAANNNNTTC 2 cut(s) 813, 1011
MseI TTAA 3 cut(s) 296, 579, 1173
MslI CAYNNNNRTG 2 cut(s) 852, 1149
MspA1I CMGCKG 1 cut(s) 246
MspI CCGG 2 cut(s) 207, 599
MspR9I CCNGG 1 cut(s) 660
Mva1269I GAATGC 2 cut(s) 1133, 1268
MvaI CCWGG 1 cut(s) 660
MvnI CGCG 3 cut(s) 135, 246, 291
MwoI GCNNNNNNNGC 5 cut(s) 246, 290, 1052, 1249, 1274
NaeI GCCGGC 1 cut(s) 600
NdeII GATC 1 cut(s) 850
NgoMIV GCCGGC 1 cut(s) 598
NlaIII CATG 6 cut(s) 478, 851, 969, 1007, 1148, 1190
NlaIV GGNNCC 4 cut(s) 205, 211, 417, 1021
NmeAIII GCCGAG 1 cut(s) 537
NmuCI GTSAC 3 cut(s) 90, 139, 620
NspI RCATGY 2 cut(s) 478, 969
PciI ACATGT 1 cut(s) 474
PcsI WCGNNNNNNNCGW 1 cut(s) 491
PctI GAATGC 2 cut(s) 1133, 1268
PdiI GCCGGC 1 cut(s) 600
PdmI GAANNNNTTC 2 cut(s) 813, 1011
PfeI GAWTC 3 cut(s) 263, 584, 1073
PkrI GCNGC 6 cut(s) 134, 154, 248, 290, 692, 1045
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PscI ACATGT 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 658
PspGI CCWGG 1 cut(s) 658
PspN4I GGNNCC 4 cut(s) 205, 211, 417, 1021
PspPI GGNCC 2 cut(s) 130, 415
RseI CAYNNNNRTG 2 cut(s) 852, 1149
SacII CCGCGG 1 cut(s) 247
SaqAI TTAA 3 cut(s) 296, 579, 1173
SatI GCNGC 6 cut(s) 133, 153, 247, 289, 691, 1044
Sau3AI GATC 1 cut(s) 850
Sau96I GGNCC 2 cut(s) 130, 415
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 660
SduI GDGCHC 2 cut(s) 1057, 1186
SfaNI GCATC 1 cut(s) 379
SfcI CTRYAG 2 cut(s) 48, 340
Sfr303I CCGCGG 1 cut(s) 247
SgrBI CCGCGG 1 cut(s) 247
SinI GGWCC 1 cut(s) 415
SmiMI CAYNNNNRTG 2 cut(s) 852, 1149
Sse9I AATT 6 cut(s) 182, 467, 636, 929, 1170, 1237
SsiI CCGC 8 cut(s) 133, 153, 244, 246, 289, 552, 948, 969
SspMI CTAG 1 cut(s) 549
StyD4I CCNGG 1 cut(s) 658
TaaI ACNGT 4 cut(s) 145, 375, 646, 784
TaiI ACGT 1 cut(s) 8
TaqI TCGA 2 cut(s) 977, 1165
TasI AATT 6 cut(s) 182, 467, 636, 929, 1170, 1237
TauI GCSGC 4 cut(s) 135, 155, 249, 291
TfiI GAWTC 3 cut(s) 263, 584, 1073
Tru1I TTAA 3 cut(s) 296, 579, 1173
Tru9I TTAA 3 cut(s) 296, 579, 1173
TseFI GTSAC 3 cut(s) 90, 139, 620
TseI GCWGC 2 cut(s) 690, 1043
Tsp45I GTSAC 3 cut(s) 90, 139, 620
TspDTI ATGAA 5 cut(s) 507, 552, 1020, 1140, 1203
TspGWI ACGGA 1 cut(s) 1053
VpaK11BI GGWCC 1 cut(s) 415
XagI CCTNNNNNAGG 2 cut(s) 114, 552
XapI RAATTY 1 cut(s) 929
XceI RCATGY 2 cut(s) 478, 969
XmiI GTMKAC 2 cut(s) 765, 1067
XmnI GAANNNNTTC 2 cut(s) 813, 1011
XspI CTAG 1 cut(s) 549
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.