Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002079

Physical Location & Seq

Genomic Coordinates Forward (+)

26705722 .. 26707132

Gene Structure 1411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g26780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGACACAGCTCACTGGCCACAGGGTATTGGAGTGGTTAAATCCATGGAAGATTTTTCTTCTACAAGGCCAAACACAGAGAAAAGGGCAAGGCCACAAAAGGATCAAGCTTTGAATTGTCCAAGGTGTAATTCCACCACCACAAAATTCTGTTATTACAACAATTACAGCCTCTCTCAGCCAAGATACTTTTGCAAGACTTGCAAAAGGTATTGGACTGAAGGTGGATCTCTCAGAAATGTTCCTGTGGGTGGAGGCTCGCGGAAGAACAACAAGAGATCAAATAATTCCGATTCATCGTCACCGTCCACGTCTTCAGCGAAGAAGGTTGCTTATGATCGTGATCACCATCTGACCCCACATGGTAATTTTCCTCCTCAGTCTGCTTCTCAAAACCCTAATAAGATCCACTTCCAAGGCCAAGATCTCAACCTTGCATACCCAACAGCTGATCAGGACTATGATAACAACAATATTACCAAACTATCCTTTAGTATTGACAACAAAACCTACCACCCAAACCCTAGCTCTTCGGGCACTACTACTACATCTCATCATTTCTCATCGGCTATGGAACTGCTCACAAGTACCGGGATTGCATCAAGGGGGCTGAGTTCTTTCGTACCGATGGCAGCAGCGGCCGTGCCGGACCATTCGAATAATATCACAATGTTTTCTGCTGGGTTTCCTATGCAAGAGTTCAAGCAAAGTGGGCTTAGTTTTTCTCTAGATGGGTTTGAGACTGCTGGTTATGGTGGGTGCCTACAAGGTGTGCAAGAGAATACAACTAGTCATGCCAGGCTTTTGTTTCCTACTGATCAGGATTTTAAGCAGCAGATTCCGAGCTCCACTACTACTGCTGCCGAATTTGATCAGCACAATAATAGAGGAAGGGAAGGAGATTCTGGTGGTGGGTATTGGAATGGAATGTTAGGTGGAGGATCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

317

Amino Acids

34.62

Weight (kDa)

8.46

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	35 - 92	8.2e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46590 AT2G46590 AT3G61850 AT3G61850 AT3G61850 AT3G61850 AT3G61850
fragaria_vesca	FvH4_7g17000 FvH4_7g17000 FvH4_7g17000 FvH4_7g32170 FvH4_7g32170 FvH4_7g32170
malus_domestica	MD01G1084700.v1.1 MD01G1224500.v1.1 MD07G1153300.v1.1 MD07G1295200.v1.1
prunus_persica	Prupe.2G192300_v2.0.a1 Prupe.2G192300_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1
pyrus_communis	pycom01g23320 pycom07g26780
rosa_chinensis	RchiOBHm_Chr1g0360381 RchiOBHm_Chr1g0381791
rosa_laevigata	RLG00000026205 RLG00000027812
rosa_multiflora	Rmu_sc0008418.1_g000008 Rmu_ssc0000368.1_g000076
rosa_roxburghii	Rroxscaffold_4G00278450 Rroxscaffold_4G00296170
rosa_rugosa	Rorug01G0276400 Rorug01G0276500 Rorug01G0431000
rosa_samantha	Rh1AG290500 Rh1AG454400 Rh1BG255600 Rh1CG273300 Rh1CG426000 Rh1DG285400 Rh1DG443700
rosa_wichuraiana	Rw1G025720 Rw1G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	759
AccII	CGCG	1 cut(s)	262
AciI	CCGC	2 cut(s)	262, 638
AclWI	GGATC	4 cut(s)	111, 235, 400, 949
AcoI	YGGCCR	2 cut(s)	17, 639
AcsI	RAATTY	2 cut(s)	146, 866
AcuI	CTGAAG	2 cut(s)	240, 300
AfaI	GTAC	2 cut(s)	589, 624
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	115, 703
AhlI	ACTAGT	1 cut(s)	788
AjiI	CACGTC	1 cut(s)	312
AjnI	CCWGG	1 cut(s)	797
AjuI	GAANNNNNNNTTGG	2 cut(s)	115, 147
AluBI	AGCT	5 cut(s)	11, 110, 449, 528, 846
AluI	AGCT	5 cut(s)	11, 110, 449, 528, 846
Alw21I	GWGCWC	1 cut(s)	848
Alw26I	GTCTC	1 cut(s)	734
AlwI	GGATC	4 cut(s)	111, 235, 400, 949
AoxI	GGCC	5 cut(s)	17, 68, 92, 418, 639
ApeKI	GCWGC	4 cut(s)	632, 635, 832, 860
ApoI	RAATTY	2 cut(s)	146, 866
AspS9I	GGNCC	1 cut(s)	649
AsuC2I	CCSGG	1 cut(s)	592
AsuHPI	GGTGA	2 cut(s)	294, 338
AsuII	TTCGAA	1 cut(s)	656
AvaII	GGWCC	1 cut(s)	649
BaeGI	GKGCMC	1 cut(s)	539
BalI	TGGCCA	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	759
BanII	GRGCYC	1 cut(s)	848
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	848
BbvI	GCAGC	4 cut(s)	644, 647, 844, 847
BccI	CCATC	3 cut(s)	357, 622, 725
BceAI	ACGGC	1 cut(s)	626
BciT130I	CCWGG	1 cut(s)	799
BclI	TGATCA	4 cut(s)	343, 451, 817, 871
BcnI	CCSGG	1 cut(s)	592
BcoDI	GTCTC	1 cut(s)	734
BcuI	ACTAGT	1 cut(s)	788
BfaI	CTAG	3 cut(s)	525, 728, 789
BglII	AGATCT	1 cut(s)	424
BisI	GCNGC	5 cut(s)	633, 636, 639, 833, 861
BlsI	GCNGC	5 cut(s)	634, 637, 640, 834, 862
Bme1390I	CCNGG	2 cut(s)	592, 799
Bme18I	GGWCC	1 cut(s)	649
BmgBI	CACGTC	1 cut(s)	312
BmgT120I	GGNCC	1 cut(s)	649
BmiI	GGNNCC	1 cut(s)	761
BmrFI	CCNGG	2 cut(s)	592, 799
BmsI	GCATC	1 cut(s)	608
BpiI	GAAGAC	1 cut(s)	306
Bpu14I	TTCGAA	1 cut(s)	656
BpuMI	CCSGG	1 cut(s)	592
BsaBI	GATNNNNATC	2 cut(s)	342, 348
BsaJI	CCNNGG	3 cut(s)	45, 122, 415
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	20
Bse8I	GATNNNNATC	2 cut(s)	342, 348
BseBI	CCWGG	1 cut(s)	799
BseDI	CCNNGG	3 cut(s)	45, 122, 415
BseJI	GATNNNNATC	2 cut(s)	342, 348
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	4 cut(s)	191, 247, 392, 602
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	1 cut(s)	366
BseSI	GKGCMC	1 cut(s)	539
BseX3I	CGGCCG	1 cut(s)	639
BseXI	GCAGC	4 cut(s)	644, 647, 844, 847
BseYI	CCCAGC	1 cut(s)	680
Bsh1236I	CGCG	1 cut(s)	262
Bsh1285I	CGRYCG	1 cut(s)	642
BshFI	GGCC	5 cut(s)	19, 70, 94, 420, 641
BshNI	GGYRCC	1 cut(s)	759
BsiEI	CGRYCG	1 cut(s)	642
BsiHKAI	GWGCWC	1 cut(s)	848
BsiSI	CCGG	2 cut(s)	591, 647
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	734
BsnI	GGCC	5 cut(s)	19, 70, 94, 420, 641
Bsp119I	TTCGAA	1 cut(s)	656
Bsp1286I	GDGCHC	2 cut(s)	539, 848
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	2 cut(s)	262, 638
BspANI	GGCC	5 cut(s)	19, 70, 94, 420, 641
BspCNI	CTCAG	4 cut(s)	190, 246, 391, 603
BspFNI	CGCG	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	761
BspPI	GGATC	4 cut(s)	111, 235, 400, 949
BspQI	GCTCTTC	1 cut(s)	535
BspT104I	TTCGAA	1 cut(s)	656
BspT107I	GGYRCC	1 cut(s)	759
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	45, 122, 415
BssT1I	CCWWGG	3 cut(s)	45, 122, 415
Bst2UI	CCWGG	1 cut(s)	799
Bst4CI	ACNGT	1 cut(s)	306
Bst6I	CTCTTC	1 cut(s)	535
BstAPI	GCANNNNNTGC	1 cut(s)	201
BstBI	TTCGAA	1 cut(s)	656
BstC8I	GCNNGC	1 cut(s)	260
BstDEI	CTNAG	5 cut(s)	177, 233, 378, 611, 716
BstDSI	CCRYGG	1 cut(s)	45
BstFNI	CGCG	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	734
BstMCI	CGRYCG	1 cut(s)	642
BstMWI	GCNNNNNNNGC	4 cut(s)	201, 534, 638, 712
BstNI	CCWGG	1 cut(s)	799
BstSCI	CCNGG	2 cut(s)	590, 797
BstSLI	GKGCMC	1 cut(s)	539
BstUI	CGCG	1 cut(s)	262
BstV1I	GCAGC	4 cut(s)	644, 647, 844, 847
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	3 cut(s)	227, 405, 424
BstYI	RGATCY	3 cut(s)	227, 405, 424
BstZI	CGGCCG	1 cut(s)	639
BsuRI	GGCC	5 cut(s)	19, 70, 94, 420, 641
BtgI	CCRYGG	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	13
Cac8I	GCNNGC	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	649
Csp6I	GTAC	2 cut(s)	588, 623
CspCI	CAANNNNNGTGG	2 cut(s)	691, 726
CviAII	CATG	4 cut(s)	46, 362, 794, 945
CviQI	GTAC	2 cut(s)	588, 623
DdeI	CTNAG	5 cut(s)	177, 233, 378, 611, 716
EaeI	YGGCCR	2 cut(s)	17, 639
EagI	CGGCCG	1 cut(s)	639
Eam1104I	CTCTTC	1 cut(s)	535
EarI	CTCTTC	1 cut(s)	535
Ecl136II	GAGCTC	1 cut(s)	846
EclXI	CGGCCG	1 cut(s)	639
Eco130I	CCWWGG	3 cut(s)	45, 122, 415
Eco24I	GRGCYC	1 cut(s)	848
Eco47I	GGWCC	1 cut(s)	649
Eco52I	CGGCCG	1 cut(s)	639
Eco53kI	GAGCTC	1 cut(s)	846
Eco57I	CTGAAG	2 cut(s)	240, 300
EcoICRI	GAGCTC	1 cut(s)	846
EcoRII	CCWGG	1 cut(s)	797
EcoT14I	CCWWGG	3 cut(s)	45, 122, 415
EcoT38I	GRGCYC	1 cut(s)	848
ErhI	CCWWGG	3 cut(s)	45, 122, 415
FaeI	CATG	4 cut(s)	49, 365, 797, 948
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FatI	CATG	4 cut(s)	45, 361, 793, 944
FbaI	TGATCA	4 cut(s)	343, 451, 817, 871
Fnu4HI	GCNGC	5 cut(s)	633, 636, 639, 833, 861
FriOI	GRGCYC	1 cut(s)	848
Fsp4HI	GCNGC	5 cut(s)	633, 636, 639, 833, 861
FspBI	CTAG	3 cut(s)	525, 728, 789
GluI	GCNGC	5 cut(s)	633, 636, 639, 833, 861
GsaI	CCCAGC	1 cut(s)	684
HaeIII	GGCC	5 cut(s)	19, 70, 94, 420, 641
HapII	CCGG	2 cut(s)	591, 647
Hin1II	CATG	4 cut(s)	49, 365, 797, 948
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	3 cut(s)	293, 838, 902
HpaII	CCGG	2 cut(s)	591, 647
HphI	GGTGA	2 cut(s)	294, 338
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	4 cut(s)	236, 292, 354, 843
Hpy188III	TCNNGA	4 cut(s)	341, 455, 728, 821
Hpy8I	GTNNAC	1 cut(s)	309
HpyAV	CCTTC	4 cut(s)	215, 319, 885, 890
HpyCH4III	ACNGT	1 cut(s)	306
HpyCH4IV	ACGT	1 cut(s)	311
HpyCH4V	TGCA	6 cut(s)	195, 204, 437, 599, 694, 775
HpyF10VI	GCNNNNNNNGC	4 cut(s)	201, 534, 638, 712
HpyF3I	CTNAG	5 cut(s)	177, 233, 378, 611, 716
HpySE526I	ACGT	1 cut(s)	311
Hsp92II	CATG	4 cut(s)	49, 365, 797, 948
Ksp22I	TGATCA	4 cut(s)	343, 451, 817, 871
LguI	GCTCTTC	1 cut(s)	535
LmnI	GCTCC	1 cut(s)	851
Lsp1109I	GCAGC	4 cut(s)	644, 647, 844, 847
LweI	GCATC	1 cut(s)	608
MaeI	CTAG	3 cut(s)	525, 728, 789
MaeII	ACGT	1 cut(s)	311
MaeIII	GTNAC	1 cut(s)	300
MboII	GAAGA	6 cut(s)	51, 62, 277, 306, 334, 522
MflI	RGATCY	3 cut(s)	227, 405, 424
MhlI	GDGCHC	2 cut(s)	539, 848
MlsI	TGGCCA	1 cut(s)	19
MluCI	AATT	7 cut(s)	115, 130, 146, 163, 286, 367, 866
MluNI	TGGCCA	1 cut(s)	19
MnlI	CCTC	6 cut(s)	182, 248, 384, 387, 881, 932
Mox20I	TGGCCA	1 cut(s)	19
MscI	TGGCCA	1 cut(s)	19
MseI	TTAA	2 cut(s)	39, 828
Msp20I	TGGCCA	1 cut(s)	19
MspA1I	CMGCKG	2 cut(s)	449, 638
MspI	CCGG	2 cut(s)	591, 647
MspR9I	CCNGG	2 cut(s)	592, 799
MvaI	CCWGG	1 cut(s)	799
MvnI	CGCG	1 cut(s)	262
MwoI	GCNNNNNNNGC	4 cut(s)	201, 534, 638, 712
NciI	CCSGG	1 cut(s)	592
NcoI	CCATGG	1 cut(s)	45
NlaIII	CATG	4 cut(s)	49, 365, 797, 948
NlaIV	GGNNCC	1 cut(s)	761
NmuCI	GTSAC	1 cut(s)	300
NspV	TTCGAA	1 cut(s)	656
PciSI	GCTCTTC	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	1 cut(s)	317
PfeI	GAWTC	3 cut(s)	293, 838, 902
PkrI	GCNGC	5 cut(s)	634, 637, 640, 834, 862
Psp124BI	GAGCTC	1 cut(s)	848
Psp6I	CCWGG	1 cut(s)	797
PspFI	CCCAGC	1 cut(s)	680
PspGI	CCWGG	1 cut(s)	797
PspN4I	GGNNCC	1 cut(s)	761
PspPI	GGNCC	1 cut(s)	649
PsuI	RGATCY	3 cut(s)	227, 405, 424
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	2 cut(s)	589, 624
RsaNI	GTAC	2 cut(s)	588, 623
SacI	GAGCTC	1 cut(s)	848
SapI	GCTCTTC	1 cut(s)	535
SaqAI	TTAA	2 cut(s)	39, 828
SatI	GCNGC	5 cut(s)	633, 636, 639, 833, 861
Sau96I	GGNCC	1 cut(s)	649
ScrFI	CCNGG	2 cut(s)	592, 799
SduI	GDGCHC	2 cut(s)	539, 848
SfaNI	GCATC	1 cut(s)	608
SfuI	TTCGAA	1 cut(s)	656
SinI	GGWCC	1 cut(s)	649
SpeI	ACTAGT	1 cut(s)	788
Sse9I	AATT	7 cut(s)	115, 130, 146, 163, 286, 367, 866
SsiI	CCGC	2 cut(s)	262, 638
SspI	AATATT	1 cut(s)	475
SspMI	CTAG	3 cut(s)	525, 728, 789
SstI	GAGCTC	1 cut(s)	848
StyD4I	CCNGG	2 cut(s)	590, 797
StyI	CCWWGG	3 cut(s)	45, 122, 415
TaaI	ACNGT	1 cut(s)	306
TaiI	ACGT	1 cut(s)	314
TaqI	TCGA	1 cut(s)	656
TasI	AATT	7 cut(s)	115, 130, 146, 163, 286, 367, 866
TauI	GCSGC	1 cut(s)	641
TfiI	GAWTC	3 cut(s)	293, 838, 902
Tru1I	TTAA	2 cut(s)	39, 828
Tru9I	TTAA	2 cut(s)	39, 828
TscAI	CASTG	1 cut(s)	20
TseFI	GTSAC	1 cut(s)	300
TseI	GCWGC	4 cut(s)	632, 635, 832, 860
Tsp45I	GTSAC	1 cut(s)	300
TspDTI	ATGAA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	649
XapI	RAATTY	2 cut(s)	146, 866
XbaI	TCTAGA	1 cut(s)	727
XspI	CTAG	3 cut(s)	525, 728, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.