Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002079

Physical Location & Seq

Genomic Coordinates Forward (+)

38625528 .. 38626919

Gene Structure 1392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG255600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGACACTGCTCAATGGCCTCAGGAAATTGGATTGGAGAAGACAATGGAAGAGAATATGGGGTCTGATGCAAGGTTAGCCTCAGAGAAAAGGGCAAGGCCTCAAGAGCAATTGAATTGTCCAAGGTGCAATTCAACCAACACCAAGTTTTGTTACTACAACAACTATAGCCTCACTCAACCAAGATACTTCTGCAAAACATGCAGAAGGTATTGGACTGAAGGTGGAACTCTCAGAAATGTTCCTGTTGGAGGAGGTTCAAGAAAGAACAAGAAGTCAACATCATCAACAGCTTCATCGTCAGCGATTTCTTCATCAAAGAATATCATTCCTGATCTTAACCCACCAAATTTGTCTCACTTTTCATCTCAAAACCCTAGGATGACCCATGAAGGCCAAGATCTTAATCTGGCCTTTTCTGCTAATGTGGAGCACTACAATGGTACTAGTACTGCTCATTATGTTGATCATCACCAGGTGCCCAAAATGGAAAGCAACAACTCATCGGCTTTAGAGCTGCTTAGGGGTACTGGCATTGCTTCTAGAGGTGTGAATTCATATATACCAAACTCAATCCAGGATTCAAATGCAGTGCTTTATTCATCGTCCGGGTTCTCTTTGCAAGAATTCAAACCAAGTCAGCTTGGTTTTTGTGTTGATGGGGTTGGAAGTAGGTATGGTGATCATCCTCAAGAGAATGGTGGTAGTGGAAGGCTCTTGTTTCCATTTGGGGATTTGAAGCAAATCTCAAGCACTACTACAGGTCATCATGAACTTGATCAGAATAAGGGGCAAGGTAATCCATCTGGGTATTGGAATGGATTAATGGGTGGAGGGTCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009415 GO:0009416 GO:0009628 GO:0009639 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010029 GO:0010030 GO:0010035 GO:0010114 GO:0010161 GO:0010371 GO:0010372 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0042221 GO:0043455 GO:0045828 GO:0045834 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0090351 GO:0104004 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

281

Amino Acids

30.83

Weight (kDa)

8.18

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	36 - 92	6.4e-34	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46590 AT2G46590 AT3G61850 AT3G61850 AT3G61850 AT3G61850 AT3G61850
fragaria_vesca	FvH4_7g17000 FvH4_7g17000 FvH4_7g17000 FvH4_7g32170 FvH4_7g32170 FvH4_7g32170
malus_domestica	MD01G1084700.v1.1 MD01G1224500.v1.1 MD07G1153300.v1.1 MD07G1295200.v1.1
prunus_persica	Prupe.2G192300_v2.0.a1 Prupe.2G192300_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1
pyrus_communis	pycom01g23320 pycom07g26780
rosa_chinensis	RchiOBHm_Chr1g0360381 RchiOBHm_Chr1g0381791
rosa_laevigata	RLG00000026205 RLG00000027812
rosa_multiflora	Rmu_sc0008418.1_g000008 Rmu_ssc0000368.1_g000076
rosa_roxburghii	Rroxscaffold_4G00278450 Rroxscaffold_4G00296170
rosa_rugosa	Rorug01G0276400 Rorug01G0276500 Rorug01G0431000
rosa_samantha	Rh1AG290500 Rh1AG454400 Rh1BG255600 Rh1CG273300 Rh1CG426000 Rh1DG285400 Rh1DG443700
rosa_wichuraiana	Rw1G025720 Rw1G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	478
AcsI	RAATTY	3 cut(s)	349, 553, 626
AcuI	CTGAAG	1 cut(s)	240
AdeI	CACNNNGTG	1 cut(s)	478
AfaI	GTAC	3 cut(s)	445, 451, 529
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	6 cut(s)	115, 135, 261, 585, 631, 739
AhlI	ACTAGT	1 cut(s)	446
AjnI	CCWGG	2 cut(s)	474, 576
AjuI	GAANNNNNNNTTGG	2 cut(s)	115, 147
AluBI	AGCT	3 cut(s)	293, 517, 643
AluI	AGCT	3 cut(s)	293, 517, 643
Alw21I	GWGCWC	1 cut(s)	435
Alw26I	GTCTC	1 cut(s)	360
AoxI	GGCC	4 cut(s)	17, 98, 394, 411
ApeKI	GCWGC	1 cut(s)	517
ApoI	RAATTY	3 cut(s)	349, 553, 626
AseI	ATTAAT	1 cut(s)	824
AspA2I	CCTAGG	1 cut(s)	377
AsuC2I	CCSGG	1 cut(s)	610
AsuHPI	GGTGA	2 cut(s)	464, 692
AvrII	CCTAGG	1 cut(s)	377
AxyI	CCTNAGG	1 cut(s)	21
BaeGI	GKGCMC	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	478
BbsI	GAAGAC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	435
BbvI	GCAGC	1 cut(s)	504
BccI	CCATC	2 cut(s)	653, 811
BciT130I	CCWGG	2 cut(s)	476, 578
BclI	TGATCA	3 cut(s)	466, 682, 778
BcnI	CCSGG	1 cut(s)	610
BcoDI	GTCTC	1 cut(s)	360
BcuI	ACTAGT	1 cut(s)	446
BfaI	CTAG	3 cut(s)	378, 447, 543
BfmI	CTRYAG	2 cut(s)	166, 759
BglII	AGATCT	1 cut(s)	400
BisI	GCNGC	1 cut(s)	518
BlnI	CCTAGG	1 cut(s)	377
BlsI	GCNGC	1 cut(s)	519
BmcAI	AGTACT	1 cut(s)	451
Bme1390I	CCNGG	3 cut(s)	476, 578, 610
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	3 cut(s)	476, 578, 610
BmsI	GCATC	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	521
BpuEI	CTTGAG	3 cut(s)	87, 675, 733
BpuMI	CCSGG	1 cut(s)	610
BsaBI	GATNNNNATC	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	122, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	535
Bse21I	CCTNAGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	534
Bse8I	GATNNNNATC	1 cut(s)	405
BseBI	CCWGG	2 cut(s)	476, 578
BseDI	CCNNGG	2 cut(s)	122, 377
BseGI	GGATG	2 cut(s)	387, 685
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	3 cut(s)	35, 96, 247
BseNI	ACTGG	1 cut(s)	535
BseRI	GAGGAG	1 cut(s)	267
BseSI	GKGCMC	1 cut(s)	483
BseXI	GCAGC	1 cut(s)	504
BshFI	GGCC	4 cut(s)	19, 100, 396, 413
BshNI	GGYRCC	1 cut(s)	478
BsiHKAI	GWGCWC	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	609
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	360
BsnI	GGCC	4 cut(s)	19, 100, 396, 413
Bsp1286I	GDGCHC	2 cut(s)	435, 483
Bsp143I	GATC	5 cut(s)	334, 400, 466, 682, 778
BspANI	GGCC	4 cut(s)	19, 100, 396, 413
BspCNI	CTCAG	3 cut(s)	34, 95, 246
BspHI	TCATGA	1 cut(s)	769
BspLI	GGNNCC	1 cut(s)	480
BspT107I	GGYRCC	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	535
BssECI	CCNNGG	2 cut(s)	122, 377
BssMI	GATC	5 cut(s)	334, 400, 466, 682, 778
BssT1I	CCWWGG	2 cut(s)	122, 377
Bst2UI	CCWGG	2 cut(s)	476, 578
Bst6I	CTCTTC	1 cut(s)	45
BstAPI	GCANNNNNTGC	1 cut(s)	201
BstDEI	CTNAG	4 cut(s)	21, 82, 233, 521
BstENI	CCTNNNNNAGG	1 cut(s)	249
BstF5I	GGATG	2 cut(s)	387, 685
BstKTI	GATC	5 cut(s)	337, 403, 469, 685, 781
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	5 cut(s)	334, 400, 466, 682, 778
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 106, 201, 419
BstNI	CCWGG	2 cut(s)	476, 578
BstNSI	RCATGY	1 cut(s)	204
BstSCI	CCNGG	3 cut(s)	474, 576, 608
BstSFI	CTRYAG	2 cut(s)	166, 759
BstSLI	GKGCMC	1 cut(s)	483
BstV1I	GCAGC	1 cut(s)	504
BstV2I	GAAGAC	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
Bsu36I	CCTNAGG	1 cut(s)	21
BsuRI	GGCC	4 cut(s)	19, 100, 396, 413
BtsCI	GGATG	2 cut(s)	387, 685
BtsI	GCAGTG	2 cut(s)	6, 597
BtsIMutI	CAGTG	2 cut(s)	6, 597
CciI	TCATGA	1 cut(s)	769
CsiI	ACCWGGT	1 cut(s)	474
Csp6I	GTAC	3 cut(s)	444, 450, 528
CspCI	CAANNNNNGTGG	2 cut(s)	333, 368
CviAII	CATG	4 cut(s)	201, 389, 770, 840
CviQI	GTAC	3 cut(s)	444, 450, 528
DdeI	CTNAG	4 cut(s)	21, 82, 233, 521
DpnI	GATC	5 cut(s)	336, 402, 468, 684, 780
DpnII	GATC	5 cut(s)	334, 400, 466, 682, 778
DraIII	CACNNNGTG	1 cut(s)	478
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco130I	CCWWGG	2 cut(s)	122, 377
Eco147I	AGGCCT	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	240
Eco81I	CCTNAGG	1 cut(s)	21
EcoNI	CCTNNNNNAGG	1 cut(s)	249
EcoRI	GAATTC	2 cut(s)	553, 626
EcoRII	CCWGG	2 cut(s)	474, 576
EcoT14I	CCWWGG	2 cut(s)	122, 377
ErhI	CCWWGG	2 cut(s)	122, 377
FaeI	CATG	4 cut(s)	204, 392, 773, 843
FatI	CATG	4 cut(s)	200, 388, 769, 839
FbaI	TGATCA	3 cut(s)	466, 682, 778
Fnu4HI	GCNGC	1 cut(s)	518
FokI	GGATG	2 cut(s)	394, 672
Fsp4HI	GCNGC	1 cut(s)	518
FspBI	CTAG	3 cut(s)	378, 447, 543
GluI	GCNGC	1 cut(s)	518
HaeIII	GGCC	4 cut(s)	19, 100, 396, 413
HapII	CCGG	1 cut(s)	609
Hin1II	CATG	4 cut(s)	204, 392, 773, 843
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HinfI	GANTC	1 cut(s)	581
HpaII	CCGG	1 cut(s)	609
HphI	GGTGA	2 cut(s)	464, 692
Hpy166II	GTNNAC	1 cut(s)	279
Hpy188I	TCNGA	4 cut(s)	67, 85, 236, 783
Hpy188III	TCNNGA	7 cut(s)	23, 104, 261, 332, 543, 692, 770
Hpy8I	GTNNAC	1 cut(s)	279
HpyAV	CCTTC	4 cut(s)	201, 215, 386, 705
HpyCH4V	TGCA	6 cut(s)	71, 129, 195, 204, 590, 622
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 106, 201, 419
HpyF3I	CTNAG	4 cut(s)	21, 82, 233, 521
Hsp92II	CATG	4 cut(s)	204, 392, 773, 843
Ksp22I	TGATCA	3 cut(s)	466, 682, 778
Kzo9I	GATC	5 cut(s)	334, 400, 466, 682, 778
LmnI	GCTCC	1 cut(s)	430
Lsp1109I	GCAGC	1 cut(s)	504
LweI	GCATC	1 cut(s)	58
MabI	ACCWGGT	1 cut(s)	474
MaeI	CTAG	3 cut(s)	378, 447, 543
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	5 cut(s)	336, 402, 468, 684, 780
MboI	GATC	5 cut(s)	334, 400, 466, 682, 778
MboII	GAAGA	3 cut(s)	52, 62, 303
MfeI	CAATTG	1 cut(s)	110
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	2 cut(s)	435, 483
MluCI	AATT	7 cut(s)	27, 110, 115, 130, 349, 553, 626
MmeI	TCCRAC	2 cut(s)	229, 646
MnlI	CCTC	9 cut(s)	30, 91, 111, 182, 245, 248, 539, 699, 827
MseI	TTAA	3 cut(s)	339, 405, 824
MslI	CAYNNNNRTG	1 cut(s)	438
MspI	CCGG	1 cut(s)	609
MspR9I	CCNGG	3 cut(s)	476, 578, 610
MunI	CAATTG	1 cut(s)	110
MvaI	CCWGG	2 cut(s)	476, 578
MwoI	GCNNNNNNNGC	4 cut(s)	77, 106, 201, 419
NciI	CCSGG	1 cut(s)	610
NdeII	GATC	5 cut(s)	334, 400, 466, 682, 778
NlaIII	CATG	4 cut(s)	204, 392, 773, 843
NlaIV	GGNNCC	1 cut(s)	480
NspI	RCATGY	1 cut(s)	204
PagI	TCATGA	1 cut(s)	769
PceI	AGGCCT	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	581
PfoI	TCCNGGA	1 cut(s)	576
PkrI	GCNGC	1 cut(s)	519
PshBI	ATTAAT	1 cut(s)	824
Psp6I	CCWGG	2 cut(s)	474, 576
PspGI	CCWGG	2 cut(s)	474, 576
PspN4I	GGNNCC	1 cut(s)	480
PsuI	RGATCY	1 cut(s)	400
RsaI	GTAC	3 cut(s)	445, 451, 529
RsaNI	GTAC	3 cut(s)	444, 450, 528
RseI	CAYNNNNRTG	1 cut(s)	438
SaqAI	TTAA	3 cut(s)	339, 405, 824
SatI	GCNGC	1 cut(s)	518
Sau3AI	GATC	5 cut(s)	334, 400, 466, 682, 778
ScaI	AGTACT	1 cut(s)	451
ScrFI	CCNGG	3 cut(s)	476, 578, 610
SduI	GDGCHC	2 cut(s)	435, 483
SexAI	ACCWGGT	1 cut(s)	474
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	2 cut(s)	166, 759
SmiMI	CAYNNNNRTG	1 cut(s)	438
SmlI	CTYRAG	3 cut(s)	102, 690, 748
SmoI	CTYRAG	3 cut(s)	102, 690, 748
SpeI	ACTAGT	1 cut(s)	446
Sse9I	AATT	7 cut(s)	27, 110, 115, 130, 349, 553, 626
SseBI	AGGCCT	1 cut(s)	100
SspMI	CTAG	3 cut(s)	378, 447, 543
StuI	AGGCCT	1 cut(s)	100
StyD4I	CCNGG	3 cut(s)	474, 576, 608
StyI	CCWWGG	2 cut(s)	122, 377
TasI	AATT	7 cut(s)	27, 110, 115, 130, 349, 553, 626
TatI	WGTACW	1 cut(s)	449
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	3 cut(s)	339, 405, 824
Tru9I	TTAA	3 cut(s)	339, 405, 824
TscAI	CASTG	2 cut(s)	13, 597
TseI	GCWGC	1 cut(s)	517
TspDTI	ATGAA	7 cut(s)	285, 303, 354, 405, 546, 591, 786
TspRI	CASTG	2 cut(s)	13, 597
VspI	ATTAAT	1 cut(s)	824
XagI	CCTNNNNNAGG	1 cut(s)	249
XapI	RAATTY	3 cut(s)	349, 553, 626
XbaI	TCTAGA	1 cut(s)	542
XceI	RCATGY	1 cut(s)	204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	810
XmaJI	CCTAGG	1 cut(s)	377
XspI	CTAG	3 cut(s)	378, 447, 543
ZrmI	AGTACT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.